View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15573_low_4 (Length: 440)

Name: NF15573_low_4
Description: NF15573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15573_low_4
NF15573_low_4
[»] chr4 (28 HSPs)
chr4 (1-422)||(6625947-6626367)
chr4 (306-410)||(6501757-6501861)
chr4 (307-422)||(6522057-6522172)
chr4 (304-422)||(6812358-6812476)
chr4 (305-422)||(6792912-6793029)
chr4 (339-422)||(6647600-6647683)
chr4 (305-422)||(6540908-6541025)
chr4 (305-422)||(6592670-6592787)
chr4 (305-419)||(6770013-6770127)
chr4 (1-74)||(6749795-6749868)
chr4 (294-422)||(6666010-6666138)
chr4 (1-74)||(6833242-6833315)
chr4 (1-73)||(6716353-6716425)
chr4 (306-422)||(6832867-6832983)
chr4 (1-74)||(6592316-6592389)
chr4 (1-74)||(6667079-6667152)
chr4 (1-72)||(6647997-6648068)
chr4 (1-72)||(7889773-7889844)
chr4 (1-74)||(6549479-6549552)
chr4 (9-66)||(6793299-6793356)
chr4 (3-72)||(6812672-6812741)
chr4 (1-64)||(6712601-6712664)
chr4 (16-74)||(6537169-6537227)
chr4 (1-62)||(21227092-21227153)
chr4 (1-63)||(10034719-10034781)
chr4 (1-72)||(6770365-6770439)
chr4 (33-72)||(6501473-6501512)
chr4 (328-422)||(6549882-6549976)
[»] scaffold0729 (1 HSPs)
scaffold0729 (305-422)||(5600-5717)
[»] scaffold0552 (1 HSPs)
scaffold0552 (3-72)||(144-213)
[»] chr7 (3 HSPs)
chr7 (1-52)||(34719967-34720018)
chr7 (1-57)||(18925416-18925472)
chr7 (1-55)||(34729868-34729922)


Alignment Details
Target: chr4 (Bit Score: 323; Significance: 0; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 422
Target Start/End: Original strand, 6625947 - 6626367
Alignment:
Q  1 gtgaaatgaactttgcacgactgtcttcccctctgaaactcaagaacacatcgtacatctttggctaaaacatcnnnnnnnnnnnnnnnnnnncatagct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                   |||||||    
T  6625947 gtgaaatgaactttgcacgactgtcttcccctctgaaactcaagaacacatcgtacatctttggctaaaacatcaaagaaaagaaaaaaaaa-catagct 6626045  T
Q  101 tagatatattgttcctgaaattcttgaggccactgatgcatcattaactatgacacagtttgttttgttattaattttcgattttcaatgcacagtcata 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  6626046 tagatatattgttcctgaaattcttgaggccactgatgcatcattaactatgacacagtttgttttgttattaattttcgattttcaattcacagtcata 6626145  T
Q  201 ctaattaactattggtgttggtgggatgattatgaatccaaatgttaacaaactgannnnnnnaatcttcacctttgtggtgatcatatatattatatac 300  Q
    |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||| ||||    
T  6626146 ctaattaactattggtgttgttggaatgattatgaatccaaatgttaacaaactgatttttataatcttcacctttgtggtgatcatatatattacatac 6626245  T
Q  301 actgccactcacctgatcagtcttattacttgattctctcttaatgatatcccttgccatcgcttgtagcagaccatgcatttcaagcttgttattctca 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6626246 actgccactcacctgatcagtcttattacttgattctctcttaatgatatcccttgccatcgcttgtagcagaccatgcatttcaagcttgttattctca 6626345  T
Q  401 ccaatggttaaaaggctcttgt 422  Q
    ||||||||||||||||||||||    
T  6626346 ccaatggttaaaaggctcttgt 6626367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 306 - 410
Target Start/End: Original strand, 6501757 - 6501861
Alignment:
Q  306 cactcacctgatcagtcttattacttgattctctcttaatgatatcccttgccatcgcttgtagcagaccatgcatttcaagcttgttattctcaccaat 405  Q
    ||||||||||||  |||||||||||||||||||| ||||||||||| |||||||| |||||||||||| ||||||||| |||||||||||||||| ||||    
T  6501757 cactcacctgattggtcttattacttgattctctgttaatgatatctcttgccatggcttgtagcagaacatgcatttgaagcttgttattctcatcaat 6501856  T
Q  406 ggtta 410  Q
    |||||    
T  6501857 ggtta 6501861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 307 - 422
Target Start/End: Original strand, 6522057 - 6522172
Alignment:
Q  307 actcacctgatcagtcttattacttgattctctcttaatgatatcccttgccatcgcttgtagcagaccatgcatttcaagcttgttattctcaccaatg 406  Q
    ||||||||||| |||||||||||||||||| ||| |||||||||| |||||||| |||||||| ||| ||||||||| |||| ||||||||||| |||||    
T  6522057 actcacctgattagtcttattacttgattccctcgtaatgatatctcttgccatggcttgtagaagaacatgcatttgaagcctgttattctcatcaatg 6522156  T
Q  407 gttaaaaggctcttgt 422  Q
    |||| |||||||||||    
T  6522157 gttacaaggctcttgt 6522172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 304 - 422
Target Start/End: Complemental strand, 6812476 - 6812358
Alignment:
Q  304 gccactcacctgatcagtcttattacttgattctctcttaatgatatcccttgccatcgcttgtagcagaccatgcatttcaagcttgttattctcacca 403  Q
    |||||||||||||| || | ||||||||||||| |||||||||||||| |||||||| |||||||||||| |||| ||||||||||||||||||| | ||    
T  6812476 gccactcacctgattagacatattacttgattccctcttaatgatatctcttgccatggcttgtagcagaacatgtatttcaagcttgttattcttatca 6812377  T
Q  404 atggttaaaaggctcttgt 422  Q
    |||| || |||||||||||    
T  6812376 atggctacaaggctcttgt 6812358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 305 - 422
Target Start/End: Complemental strand, 6793029 - 6792912
Alignment:
Q  305 ccactcacctgatcagtcttattacttgattctctcttaatgatatcccttgccatcgcttgtagcagaccatgcatttcaagcttgttattctcaccaa 404  Q
    |||||||||| ||| |||||||| ||||||||  |||||||||| || |||||||| |||||||||||| |||||||| ||||||||||||||||| |||    
T  6793029 ccactcaccttatctgtcttatttcttgattccttcttaatgatgtctcttgccatggcttgtagcagaacatgcattccaagcttgttattctcatcaa 6792930  T
Q  405 tggttaaaaggctcttgt 422  Q
    |||||| || ||||||||    
T  6792929 tggttagaaagctcttgt 6792912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 339 - 422
Target Start/End: Complemental strand, 6647683 - 6647600
Alignment:
Q  339 tcttaatgatatcccttgccatcgcttgtagcagaccatgcatttcaagcttgttattctcaccaatggttaaaaggctcttgt 422  Q
    ||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||| ||||||||| |||||||||||    
T  6647683 tcttaatgatatctcttgccatggcttgtagaagaccatgcatttcaagcttgttattctcatcaatggttacaaggctcttgt 6647600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 305 - 422
Target Start/End: Original strand, 6540908 - 6541025
Alignment:
Q  305 ccactcacctgatcagtcttattacttgattctctcttaatgatatcccttgccatcgcttgtagcagaccatgcatttcaagcttgttattctcaccaa 404  Q
    |||||||||||||| ||||| | |||||||||||||||||| ||| | |||||||| |||||||||| | ||||||||| || |||||||| |||| |||    
T  6540908 ccactcacctgatcggtcttttgacttgattctctcttaattatacctcttgccatggcttgtagcataacatgcatttgaatcttgttatcctcatcaa 6541007  T
Q  405 tggttaaaaggctcttgt 422  Q
    |||||| |||||||||||    
T  6541008 tggttataaggctcttgt 6541025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 305 - 422
Target Start/End: Original strand, 6592670 - 6592787
Alignment:
Q  305 ccactcacctgatcagtcttattacttgattctctcttaatgatatcccttgccatcgcttgtagcagaccatgcatttcaagcttgttattctcaccaa 404  Q
    ||||||||||||||||| ||||| ||||||| ||| ||||||||||| || ||||| |||||||||||| |||| ||| ||||||||||||||||  |||    
T  6592670 ccactcacctgatcagtgttattgcttgattttcttttaatgatatctctcgccatggcttgtagcagaacatgaattccaagcttgttattctcgtcaa 6592769  T
Q  405 tggttaaaaggctcttgt 422  Q
    |||||| || ||||||||    
T  6592770 tggttagaaagctcttgt 6592787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 305 - 419
Target Start/End: Complemental strand, 6770127 - 6770013
Alignment:
Q  305 ccactcacctgatcagtcttattacttgattctctcttaatgatatcccttgccatcgcttgtagcagaccatgcatttcaagcttgttattctcaccaa 404  Q
    |||||||||||||||| |  |||||||||||  |||||| |||||| ||||||||| |||||||||| | ||| |||||||| ||||||||||||| |||    
T  6770127 ccactcacctgatcaggcaaattacttgattgcctcttagtgatataccttgccatggcttgtagcaaaacattcatttcaatcttgttattctcatcaa 6770028  T
Q  405 tggttaaaaggctct 419  Q
    |||||| ||||||||    
T  6770027 tggttacaaggctct 6770013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 6749868 - 6749795
Alignment:
Q  1 gtgaaatgaactttgcacgactgtcttcccctctgaaactcaagaacacatcgtacatctttggctaaaacatc 74  Q
    |||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||| |||||||    
T  6749868 gtgaaatgaattttgcacgactgtcgtctcctctgaaactcaagaacacatcgtacatctttggctgaaacatc 6749795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 294 - 422
Target Start/End: Complemental strand, 6666138 - 6666010
Alignment:
Q  294 tatatacactgccactcacctgatcagtcttattacttgattctctcttaatgatatcccttgccatcgcttgtagcagaccatgcatttcaagcttgtt 393  Q
    |||||| ||| ||||||| |||||||||||| ||||||||||  ||  ||| |||||| |||||||| |||||| ||| | ||||||||| |||||||||    
T  6666138 tatatatactaccactcatctgatcagtcttcttacttgattgccttgtaacgatatctcttgccatggcttgttgcataacatgcatttgaagcttgtt 6666039  T
Q  394 attctcaccaatggttaaaaggctcttgt 422  Q
    ||||||| ||||||||| || ||||||||    
T  6666038 attctcatcaatggttacaaagctcttgt 6666010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 6833315 - 6833242
Alignment:
Q  1 gtgaaatgaactttgcacgactgtcttcccctctgaaactcaagaacacatcgtacatctttggctaaaacatc 74  Q
    |||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||| |||||||| |||||||    
T  6833315 gtgacatgaactttgcacgactatcttcccctctgaaactcaagaatacatcgtacacctttggctgaaacatc 6833242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 6716425 - 6716353
Alignment:
Q  1 gtgaaatgaactttgcacgactgtcttcccctctgaaactcaagaacacatcgtacatctttggctaaaacat 73  Q
    |||| |||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  6716425 gtgatatgaaccttggacgattgtcttcccctctgaaactcaagaacacatcgtacatctttggctgaaacat 6716353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 306 - 422
Target Start/End: Complemental strand, 6832983 - 6832867
Alignment:
Q  306 cactcacctgatcagtcttattacttgattctctcttaatgatatcccttgccatcgcttgtagcagaccatgcatttcaagcttgttattctcaccaat 405  Q
    ||||||||||||| ||||||||||||||||  ||| |||||| ||| |||||||| | |||||||| | ||||||||| ||| |||||||||||| | ||    
T  6832983 cactcacctgatcggtcttattacttgatttcctcctaatgacatctcttgccatggattgtagcaaaacatgcatttgaagattgttattctcatcgat 6832884  T
Q  406 ggttaaaaggctcttgt 422  Q
    ||||| || ||||||||    
T  6832883 ggttacaaagctcttgt 6832867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 6592316 - 6592389
Alignment:
Q  1 gtgaaatgaactttgcacgactgtcttcccctctgaaactcaagaacacatcgtacatctttggctaaaacatc 74  Q
    |||| ||||||||||| ||| ||||||| ||||||||||||||||||||||| ||||||||||||| |||||||    
T  6592316 gtgacatgaactttgcccgattgtcttctcctctgaaactcaagaacacatcatacatctttggctgaaacatc 6592389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 6667152 - 6667079
Alignment:
Q  1 gtgaaatgaactttgcacgactgtcttcccctctgaaactcaagaacacatcgtacatctttggctaaaacatc 74  Q
    |||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| | || |||||||    
T  6667152 gtgacatgaactttgcacgactttcttcccctctgaaactcaagaacacattgtacatcttcgactgaaacatc 6667079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 6648068 - 6647997
Alignment:
Q  1 gtgaaatgaactttgcacgactgtcttcccctctgaaactcaagaacacatcgtacatctttggctaaaaca 72  Q
    |||| |||||||||||||| |||||||||||||| |||||||||||||||||||||| ||| |||| |||||    
T  6648068 gtgacatgaactttgcacggctgtcttcccctctaaaactcaagaacacatcgtacagcttcggctgaaaca 6647997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 7889773 - 7889844
Alignment:
Q  1 gtgaaatgaactttgcacgactgtcttcccctctgaaactcaagaacacatcgtacatctttggctaaaaca 72  Q
    |||||||||| ||||| |||| ||||||||||||||||||||||||||| ||||||||||||| || |||||    
T  7889773 gtgaaatgaattttgctcgacagtcttcccctctgaaactcaagaacacgtcgtacatctttgtctgaaaca 7889844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 6549479 - 6549552
Alignment:
Q  1 gtgaaatgaactttgcacgactgtcttcccctctgaaactcaagaacacatcgtacatctttggctaaaacatc 74  Q
    |||||||||| || |||||||| |||||||||| |||||||||||| || |||||||||||||||| |||||||    
T  6549479 gtgaaatgaatttcgcacgactatcttcccctcggaaactcaagaagacgtcgtacatctttggctgaaacatc 6549552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 6793356 - 6793299
Alignment:
Q  9 aactttgcacgactgtcttcccctctgaaactcaagaacacatcgtacatctttggct 66  Q
    |||||||| ||| ||||||||||||||||||||||||||||||| |||||||||||||    
T  6793356 aactttgcccgattgtcttcccctctgaaactcaagaacacatcatacatctttggct 6793299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 3 - 72
Target Start/End: Complemental strand, 6812741 - 6812672
Alignment:
Q  3 gaaatgaactttgcacgactgtcttcccctctgaaactcaagaacacatcgtacatctttggctaaaaca 72  Q
    |||||||| || ||||||||||| |||||||| |||||||||| ||||||||||||||| |||| |||||    
T  6812741 gaaatgaatttcgcacgactgtcatcccctctaaaactcaagatcacatcgtacatcttcggctgaaaca 6812672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 6712664 - 6712601
Alignment:
Q  1 gtgaaatgaactttgcacgactgtcttcccctctgaaactcaagaacacatcgtacatctttgg 64  Q
    |||||| ||| ||||||| || ||| ||||||||||||||||||||||||||||||| ||||||    
T  6712664 gtgaaacgaattttgcactaccgtcgtcccctctgaaactcaagaacacatcgtacacctttgg 6712601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 16 - 74
Target Start/End: Original strand, 6537169 - 6537227
Alignment:
Q  16 cacgactgtcttcccctctgaaactcaagaacacatcgtacatctttggctaaaacatc 74  Q
    |||||||||| |||||||| |||||||| |||||||| ||||||||||||| |||||||    
T  6537169 cacgactgtcgtcccctctaaaactcaaaaacacatcatacatctttggctgaaacatc 6537227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 21227153 - 21227092
Alignment:
Q  1 gtgaaatgaactttgcacgactgtcttcccctctgaaactcaagaacacatcgtacatcttt 62  Q
    |||||||||| ||  || |||| ||||||||||||||||||||||||||||||| |||||||    
T  21227153 gtgaaatgaatttcacatgactttcttcccctctgaaactcaagaacacatcgtgcatcttt 21227092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 10034781 - 10034719
Alignment:
Q  1 gtgaaatgaactttgcacgactgtcttcccctctgaaactcaagaacacatcgtacatctttg 63  Q
    |||||||||| || || ||| |||||||||||||||||||||||||||| || | ||||||||    
T  10034781 gtgaaatgaatttcgcgcgaatgtcttcccctctgaaactcaagaacacgtcatgcatctttg 10034719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 6770439 - 6770365
Alignment:
Q  1 gtgaaatgaactttgcacgactgtcttcccctctgaaactcaaga---acacatcgtacatctttggctaaaaca 72  Q
    ||||||||||||| | |||| ||||| ||||||| ||||||||||   |||||||||| |||||||||| |||||    
T  6770439 gtgaaatgaacttcgaacgattgtctacccctctaaaactcaagaagtacacatcgtatatctttggctgaaaca 6770365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 33 - 72
Target Start/End: Original strand, 6501473 - 6501512
Alignment:
Q  33 ctgaaactcaagaacacatcgtacatctttggctaaaaca 72  Q
    ||||||||||||||||| |||||||||||||||| |||||    
T  6501473 ctgaaactcaagaacacgtcgtacatctttggctgaaaca 6501512  T

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Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 328 - 422
Target Start/End: Original strand, 6549882 - 6549976
Alignment:
Q  328 acttgattctctcttaatgatatcccttgccatcgcttgtagcagaccatgcatttcaagcttgttattctcaccaatggttaaaaggctcttgt 422  Q
    ||||| ||| |||||||| |||||  ||||||| ||||||||||   | ||||||||||| ||||| |||| | |||| ||||||| ||||||||    
T  6549882 acttgtttcactcttaataatatcttttgccatggcttgtagcacgacttgcatttcaaggttgtttttcttatcaatagttaaaaagctcttgt 6549976  T

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Target: scaffold0729 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: scaffold0729
Description:

Target: scaffold0729; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 305 - 422
Target Start/End: Original strand, 5600 - 5717
Alignment:
Q  305 ccactcacctgatcagtcttattacttgattctctcttaatgatatcccttgccatcgcttgtagcagaccatgcatttcaagcttgttattctcaccaa 404  Q
    |||||||||| ||| |||||||| ||||||||  |||||||||| || |||||||| |||||||||||| |||||||| ||||||||||||||||| |||    
T  5600 ccactcaccttatctgtcttatttcttgattccttcttaatgatgtctcttgccatggcttgtagcagaacatgcattccaagcttgttattctcatcaa 5699  T
Q  405 tggttaaaaggctcttgt 422  Q
    |||||| || ||||||||    
T  5700 tggttagaaagctcttgt 5717  T

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Target: scaffold0552 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0552
Description:

Target: scaffold0552; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 3 - 72
Target Start/End: Complemental strand, 213 - 144
Alignment:
Q  3 gaaatgaactttgcacgactgtcttcccctctgaaactcaagaacacatcgtacatctttggctaaaaca 72  Q
    |||||||| || ||||||||||| |||||||| |||||||||| ||||||||||||||| |||| |||||    
T  213 gaaatgaatttcgcacgactgtcatcccctctaaaactcaagatcacatcgtacatcttcggctgaaaca 144  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 34719967 - 34720018
Alignment:
Q  1 gtgaaatgaactttgcacgactgtcttcccctctgaaactcaagaacacatc 52  Q
    ||||||||||  |||||||| | |||||||||||||||||||||||||||||    
T  34719967 gtgaaatgaatcttgcacgagtatcttcccctctgaaactcaagaacacatc 34720018  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 18925472 - 18925416
Alignment:
Q  1 gtgaaatgaactttgcacgactgtcttcccctctgaaactcaagaacacatcgtaca 57  Q
    |||||||||| ||||||||||  |||  ||||||||||||||||||||| |||||||    
T  18925472 gtgaaatgaattttgcacgacaatctatccctctgaaactcaagaacacgtcgtaca 18925416  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 34729868 - 34729922
Alignment:
Q  1 gtgaaatgaactttgcacgactgtcttcccctctgaaactcaagaacacatcgta 55  Q
    |||||||||| ||||||||| |||| | ||||| |||||||||||| ||||||||    
T  34729868 gtgaaatgaattttgcacgagtgtcgttccctcggaaactcaagaagacatcgta 34729922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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