View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15573_low_6 (Length: 407)
Name: NF15573_low_6
Description: NF15573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15573_low_6 |
 | |
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| [»] scaffold0121 (1 HSPs) |
| | |
|
| [»] scaffold0057 (1 HSPs) |
| | |
|
| [»] scaffold0477 (1 HSPs) |
| | |
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Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-137; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 15 - 391
Target Start/End: Complemental strand, 776287 - 775916
Alignment:
| Q |
15 |
ggatttgacgaataaattccaactgttttaggtgattgtccttgactcttattaatagacattgcnnnnnnncaaaacagttaacgggaattgtcttctt |
114 |
Q |
| |
|
||||||| |||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||| ||||| | ||||||| |
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|
| T |
776287 |
ggatttggcgaataaattccaacttttttaggtgattgcccttgactcttattaatagacattgtaaaaaaataaaacagctaacgag-----tcttctt |
776193 |
T |
|
| Q |
115 |
taaaacttgaaaggaatattaatgttaaacaatgaaagagataacctgagcataaaaactttctcaccaacattacttccaaatatcacttttccttcaa |
214 |
Q |
| |
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| |||||| |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
776192 |
tgaaacttaaaaggaatattaatgttaaacaatgaaagagataacttgagtataaaaactttctcaccaacattacttccaaatatcacttttctttcaa |
776093 |
T |
|
| Q |
215 |
gcacaaactttcccatcctaattatgattaatcttgttccattgcataatcataannnnnnnnatcaacattcctcaaaagtatcactaatgctccaacc |
314 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||||||| |||| |
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|
| T |
776092 |
gcacaaactttcccatcctagttatgattaatcttgttccattgcataatcctaaatttttttatcaacattcctcaaaagcatcactaatgctctaacc |
775993 |
T |
|
| Q |
315 |
tttaatctgatctcgtgattacatagccatatttcataacataattgataacaaaataataaacatagtgtagttga |
391 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
775992 |
tttaatctgatctcgtgattacatagccatatttcataacataattgataacaaaataataaacatagtgtagttga |
775916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 11 - 305
Target Start/End: Original strand, 32812795 - 32813091
Alignment:
| Q |
11 |
cataggatttgacgaataaattccaactgttttaggtgattgtccttgactcttattaatagacattgcnnnnnnn-caaaacagttaacgggaattgtc |
109 |
Q |
| |
|
||||||||||| |||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||| |
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|
| T |
32812795 |
cataggatttggcgaataaatttcaacttttttaggtgattgcccttgactcttattaatagacattgcaaaaaaaacaaaacagctaacgggaattgtc |
32812894 |
T |
|
| Q |
110 |
ttctttaaaacttgaaaggaatattaatgttaaacaatgaaagagataacctgagcataaaaactttctcaccaacattacttccaaatatcacttttcc |
209 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32812895 |
ttctttaaaacttgaaaggaatattaatattaaacaatgaaagagataacctgagtataaaaactttctcaccaacattacttccaaatatcacttttcc |
32812994 |
T |
|
| Q |
210 |
ttcaagcacaaactttcccatcctaattatgattaatcttgttccattgcataatcataa-nnnnnnnnatcaacattcctcaaaagtatcactaat |
305 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||| |
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|
| T |
32812995 |
ttcaagcacaaactttcccatcctagttatgattaatcttgttccattgcataatcctaattttttttcatcaacattcctcaaaagcatcactaat |
32813091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 300 - 374
Target Start/End: Original strand, 32813862 - 32813936
Alignment:
| Q |
300 |
actaatgctccaacctttaatctgatctcgtgattacatagccatatttcataacataattgataacaaaataat |
374 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32813862 |
actaatgctacaacctttaatctgatctcgtgattacatagccatatttcataacataattgataacaaaataat |
32813936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 103 - 265
Target Start/End: Original strand, 29693394 - 29693555
Alignment:
| Q |
103 |
aattgtcttctttaaaacttgaaaggaatattaatgttaaacaatgaaagagataacctgagcataaaaactttctcaccaacattacttccaaatatca |
202 |
Q |
| |
|
|||||||||| || ||||||||||||||| |||| || | || |||||||||||||||| | || |||||||||||||| |||||||||| |||||| |
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|
| T |
29693394 |
aattgtcttcgttgaaacttgaaaggaattttaacgtcagacg-tgaaagagataacctgggtatggaaactttctcaccagtattacttccagatatca |
29693492 |
T |
|
| Q |
203 |
cttttccttcaagcacaaactttcccatcctaattatgattaatcttgttccattgcataatc |
265 |
Q |
| |
|
|||||||||||| |||||| |||| || || ||||||||| ||||||||||||||||||| |
|
|
| T |
29693493 |
cttttccttcaaacacaaattttctcactctggttatgattagccttgttccattgcataatc |
29693555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 103 - 192
Target Start/End: Original strand, 29679460 - 29679549
Alignment:
| Q |
103 |
aattgtcttctttaaaacttgaaaggaatattaatgttaaacaatgaaagagataacctgagcataaaaactttctcaccaacattactt |
192 |
Q |
| |
|
|||| ||||| || ||||||||||||||| |||| || | || |||||||||||||||| | || |||||||||||||||| ||||||| |
|
|
| T |
29679460 |
aattttcttcgttgaaacttgaaaggaattttaacgtcagacggtgaaagagataacctgggtatgaaaactttctcaccaatattactt |
29679549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 233
Target Start/End: Complemental strand, 9652433 - 9652397
Alignment:
| Q |
197 |
atatcacttttccttcaagcacaaactttcccatcct |
233 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| |
|
|
| T |
9652433 |
atatcacttttccttcaagcacaaacttacccatcct |
9652397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 265
Target Start/End: Original strand, 43731709 - 43731778
Alignment:
| Q |
196 |
aatatcacttttccttcaagcacaaactttcccatcctaattatgattaatcttgttccattgcataatc |
265 |
Q |
| |
|
||||| || ||||||||||||||||| || |||| ||| ||||||||| |||||| |||||||||||| |
|
|
| T |
43731709 |
aatatgacctttccttcaagcacaaatttatccattctagttatgattagtcttgtgtcattgcataatc |
43731778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 63; Significance: 3e-27; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 103 - 265
Target Start/End: Original strand, 34417168 - 34417330
Alignment:
| Q |
103 |
aattgtcttctttaaaacttgaaaggaatattaatgttaaacaatgaaagagataacctgagcataaaaactttctcaccaacattacttccaaatatca |
202 |
Q |
| |
|
||||||||||||| ||||||||||||||| ||||| | | || |||||||||||||||| | || || ||||| || |||| |||||||||| | || | |
|
|
| T |
34417168 |
aattgtcttctttgaaacttgaaaggaattttaatatcagacggtgaaagagataacctgggtatgaacactttttcgccaatattacttccagaaataa |
34417267 |
T |
|
| Q |
203 |
cttttccttcaagcacaaactttcccatcctaattatgattaatcttgttccattgcataatc |
265 |
Q |
| |
|
| |||||||||| ||||| |||||||| ||| |||||||||| |||||||| |||||||||| |
|
|
| T |
34417268 |
cccttccttcaagaacaaattttcccattctagttatgattaaccttgttccgttgcataatc |
34417330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 103 - 265
Target Start/End: Original strand, 8498110 - 8498272
Alignment:
| Q |
103 |
aattgtcttctttaaaacttgaaaggaatattaatgttaaacaatgaaagagataacctgagcataaaaactttctcaccaacattacttccaaatatca |
202 |
Q |
| |
|
||||||||||| ||||| ||||||||||| |||| | | || | |||||||||| || | || |||||||| || || | ||||||||| |||| | |
|
|
| T |
8498110 |
aattgtcttctctaaaatttgaaaggaattttaacatcagacggttgaagagataacttgggtatgaaaactttttcgccgatgttacttccagatataa |
8498209 |
T |
|
| Q |
203 |
cttttccttcaagcacaaactttcccatcctaattatgattaatcttgttccattgcataatc |
265 |
Q |
| |
|
| ||| ||||||| ||||| ||| ||| ||| ||||| |||| ||||||||||||||||||| |
|
|
| T |
8498210 |
cctttgcttcaagtacaaattttttcattctagttatggttaaccttgttccattgcataatc |
8498272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 166 - 265
Target Start/End: Original strand, 4649220 - 4649319
Alignment:
| Q |
166 |
ataaaaactttctcaccaacattacttccaaatatcacttttccttcaagcacaaactttcccatcctaattatgattaatcttgttccattgcataatc |
265 |
Q |
| |
|
|||||||| |||||||| | ||| |||||| |||| || ||||||||||||||||| || ||||| | ||| ||||| |||||| |||||||||||| |
|
|
| T |
4649220 |
ataaaaacgttctcacctatattgcttccagatatgacctttccttcaagcacaaatttacccattatggttacgattagtcttgtgtcattgcataatc |
4649319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 103 - 262
Target Start/End: Original strand, 50938705 - 50938864
Alignment:
| Q |
103 |
aattgtcttctttaaaacttgaaaggaatattaatgttaaacaatgaaagagataacctgagcataaaaactttctcaccaacattacttccaaatatca |
202 |
Q |
| |
|
||||||||||| ||||| ||||||||||| ||||| | | || | ||||||||||||| | || |||||||| || || | ||||||||| |||| | |
|
|
| T |
50938705 |
aattgtcttctctaaaatttgaaaggaattttaatatcagacggttgaagagataacctgggtatgaaaactttttcgccgatgttacttccatatataa |
50938804 |
T |
|
| Q |
203 |
cttttccttcaagcacaaactttcccatcctaattatgattaatcttgttccattgcata |
262 |
Q |
| |
|
| ||| ||||||| ||||| |||||||| | ||||| |||| |||||||||||||||| |
|
|
| T |
50938805 |
cctttgcttcaagaacaaattttcccattatggttatggttaaccttgttccattgcata |
50938864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 187 - 265
Target Start/End: Original strand, 26626561 - 26626639
Alignment:
| Q |
187 |
ttacttccaaatatcacttttccttcaagcacaaactttcccatcctaattatgattaatcttgttccattgcataatc |
265 |
Q |
| |
|
||||||||| |||| || || ||||||||||||| |||||||| || |||||||||| ||||||||||||||||||| |
|
|
| T |
26626561 |
ttacttccagatataaccttagcttcaagcacaaattttcccattctggttatgattaaccttgttccattgcataatc |
26626639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 166 - 263
Target Start/End: Complemental strand, 47507613 - 47507516
Alignment:
| Q |
166 |
ataaaaactttctcaccaacattacttccaaatatcacttttccttcaagcacaaactttcccatcctaattatgattaatcttgttccattgcataa |
263 |
Q |
| |
|
|||||||||||||| || | |||||||| | |||| | |||||||||| |||||| || |||||| | ||||| |||| |||||| ||||||||||| |
|
|
| T |
47507613 |
ataaaaactttctcgcctatattacttcgagatatgagatttccttcaaacacaaatttacccatcatgattattattagtcttgtaccattgcataa |
47507516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 211 - 263
Target Start/End: Original strand, 49200511 - 49200563
Alignment:
| Q |
211 |
tcaagcacaaactttcccatcctaattatgattaatcttgttccattgcataa |
263 |
Q |
| |
|
||||||||| | |||||||| ||| |||||||||| |||||||||||| |||| |
|
|
| T |
49200511 |
tcaagcacatattttcccattctagttatgattaaccttgttccattgaataa |
49200563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0121 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0121
Description:
Target: scaffold0121; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 190 - 265
Target Start/End: Complemental strand, 25358 - 25283
Alignment:
| Q |
190 |
cttccaaatatcacttttccttcaagcacaaactttcccatcctaattatgattaatcttgttccattgcataatc |
265 |
Q |
| |
|
|||| |||||| || ||||||||||||||||| || ||||| ||| | ||||||| |||||| ||||||||||||| |
|
|
| T |
25358 |
cttcgaaatatgacatttccttcaagcacaaatttacccattctagtaatgattagtcttgtgccattgcataatc |
25283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0057 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0057
Description:
Target: scaffold0057; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 150 - 263
Target Start/End: Original strand, 7683 - 7799
Alignment:
| Q |
150 |
aagagataacctgagcataaaaactttctcaccaacattacttccaaatatcacttttccttcaagcacaaactttcccatcc---taattatgattaat |
246 |
Q |
| |
|
||||||||| || || |||||||||||||| || | |||||||||| |||| | ||||||||||||||||| || | ||||| | ||||| |||| | |
|
|
| T |
7683 |
aagagataatcttagtataaaaactttctcgcctatattacttccagatatggcatttccttcaagcacaaatttactcatcctggttattattattagt |
7782 |
T |
|
| Q |
247 |
cttgttccattgcataa |
263 |
Q |
| |
|
||||| ||||||||||| |
|
|
| T |
7783 |
cttgtaccattgcataa |
7799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 265
Target Start/End: Complemental strand, 31226545 - 31226467
Alignment:
| Q |
187 |
ttacttccaaatatcacttttccttcaagcacaaactttcccatcctaattatgattaatcttgttccattgcataatc |
265 |
Q |
| |
|
||||||| | ||||||||||||| || |||||||| ||| ||||||| |||| |||| |||||| ||||||||||||| |
|
|
| T |
31226545 |
ttacttctagatatcacttttccctctagcacaaatttttccatccttgttataattagtcttgtcccattgcataatc |
31226467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 186 - 265
Target Start/End: Complemental strand, 9361757 - 9361678
Alignment:
| Q |
186 |
attacttccaaatatcacttttccttcaagcacaaactttcccatcctaattatgattaatcttgttccattgcataatc |
265 |
Q |
| |
|
|||||||||| |||| || ||||||||||| ||| |||||||| || ||||||||| ||||||||||||||||||| |
|
|
| T |
9361757 |
attacttccagatataacctttccttcaagattaaattttcccattatagttatgattagccttgttccattgcataatc |
9361678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0477 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0477
Description:
Target: scaffold0477; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 166 - 265
Target Start/End: Original strand, 237 - 336
Alignment:
| Q |
166 |
ataaaaactttctcaccaacattacttccaaatatcacttttccttcaagcacaaactttcccatcctaattatgattaatcttgttccattgcataatc |
265 |
Q |
| |
|
|||||||| |||||||| | ||| |||||| |||| || ||||||||||||||||| || ||||| | ||| ||||| |||||| |||||||||||| |
|
|
| T |
237 |
ataaaaacgttctcacctatattgcttccagatatgacctttccttcaagcacaaatttacccattatggttacgattagtcttgtgtcattgcataatc |
336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 190 - 265
Target Start/End: Complemental strand, 5337719 - 5337644
Alignment:
| Q |
190 |
cttccaaatatcacttttccttcaagcacaaactttcccatcctaattatgattaatcttgttccattgcataatc |
265 |
Q |
| |
|
|||| |||||| || ||||||||||||| ||| || || || ||| ||||||||| |||||| ||||||||||||| |
|
|
| T |
5337719 |
cttcgaaatatgacctttccttcaagcataaatttaccaattctagttatgattagtcttgtgccattgcataatc |
5337644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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