View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15573_low_8 (Length: 389)

Name: NF15573_low_8
Description: NF15573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15573_low_8
NF15573_low_8
[»] chr4 (18 HSPs)
chr4 (16-320)||(6625548-6625852)
chr4 (17-320)||(6793459-6793762)
chr4 (16-320)||(6648163-6648467)
chr4 (17-320)||(6591918-6592221)
chr4 (17-271)||(6536756-6537010)
chr4 (19-320)||(6770534-6770835)
chr4 (17-307)||(6812846-6813133)
chr4 (20-320)||(6833410-6833710)
chr4 (17-320)||(6501043-6501346)
chr4 (16-320)||(6716520-6716824)
chr4 (16-320)||(6749963-6750267)
chr4 (17-320)||(6549081-6549384)
chr4 (17-312)||(6712764-6713059)
chr4 (77-315)||(7889435-7889673)
chr4 (78-182)||(10034950-10035054)
chr4 (317-363)||(6625738-6625784)
chr4 (317-363)||(6592107-6592153)
chr4 (317-363)||(6793527-6793573)
[»] scaffold0552 (1 HSPs)
scaffold0552 (17-307)||(318-605)
[»] scaffold0373 (1 HSPs)
scaffold0373 (17-243)||(12542-12768)
[»] scaffold0813 (1 HSPs)
scaffold0813 (16-320)||(1852-2156)
[»] chr7 (5 HSPs)
chr7 (162-313)||(34734179-34734330)
chr7 (162-268)||(34719714-34719820)
chr7 (162-271)||(18925616-18925725)
chr7 (162-267)||(34729615-34729720)
chr7 (164-259)||(34714953-34715048)


Alignment Details
Target: chr4 (Bit Score: 285; Significance: 1e-160; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 16 - 320
Target Start/End: Original strand, 6625548 - 6625852
Alignment:
Q  16 aaaataacctggaatctatgagtacaaaacctgctatgctaccaatatcgaagagttctcttttccaattactctttgtggattcatccactgagattgt 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  6625548 aaaataacctggaatctatgagtacaaaacctgctatgctaccaatatcgaagagtgctcttttccaattactctttgtggattcatccactgagattgt 6625647  T
Q  116 tggtataagtttttcaaaagcttttccaaactgaccttcccgacgacgtacttctgagggatctacctcatagaacactggtacaacaaccagacccccg 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  6625648 tggtataagtttttcaaaagcttttccaaactgaccttcccgacgacgtacttctgagggatctacctcatagaacactggtacaaccaccagacccccg 6625747  T
Q  216 gttctgccaatttccattatcttctccaactctagcatacgccatcttgaattagcgtagtttgtagataaacccacaataaaaattctagagtgtccga 315  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||    
T  6625748 gttctgccaatttccattatcttctccaactctagcatacaccatcttgaattagcatagtttgtagataaaaccacaataaaaattctagagtgtccga 6625847  T
Q  316 ttgct 320  Q
    |||||    
T  6625848 ttgct 6625852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 17 - 320
Target Start/End: Complemental strand, 6793762 - 6793459
Alignment:
Q  17 aaataacctggaatctatgagtacaaaacctgctatgctaccaatatcgaagagttctcttttccaattactctttgtggattcatccactgagattgtt 116  Q
    ||||||||||||||||||||| ||||| |||||||| | ||||||||| |||||||| |||||||||||| ||||||||||||||||||| || |||||     
T  6793762 aaataacctggaatctatgagaacaaaccctgctataccaccaatatcaaagagttcacttttccaattagtctttgtggattcatccacggaaattgta 6793663  T
Q  117 ggtataagtttttcaaaagcttttccaaactgaccttcccgacgacgtacttctgagggatctacctcatagaacactggtacaacaaccagacccccgg 216  Q
    | |||||| |  ||||||||||| |||||  |||||||| || ||||||||||||||||| ||||||| ||||||||||| |||||||||||||||| |     
T  6793662 gatataagatcatcaaaagctttcccaaatggaccttcctgatgacgtacttctgagggagctacctcgtagaacactggcacaacaaccagacccctgt 6793563  T
Q  217 ttctgccaatttccattatcttctccaactctagcatacgccatcttgaattagcgtagtttgtagataaacccacaataaaaattctagagtgtccgat 316  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |||||||| ||  | |||||| |||||||||| ||||| ||    
T  6793562 ttctgccaatttccattatcttctccaactctagcatacaccatcttgaattggcgtaatttgtagacaacacaacaatagaaattctagactgtccaat 6793463  T
Q  317 tgct 320  Q
    ||||    
T  6793462 tgct 6793459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 16 - 320
Target Start/End: Complemental strand, 6648467 - 6648163
Alignment:
Q  16 aaaataacctggaatctatgagtacaaaacctgctatgctaccaatatcgaagagttctcttttccaattactctttgtggattcatccactgagattgt 115  Q
    ||||| ||||||||||| |||||||||| ||||||||||  |||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  6648467 aaaatgacctggaatctttgagtacaaagcctgctatgccgccaatatcaatgaggtctcttttccaattactctttgtggattcatccactgagattgt 6648368  T
Q  116 tggtataagtttttcaaaagcttttccaaactgaccttcccgacgacgtacttctgagggatctacctcatagaacactggtacaacaaccagacccccg 215  Q
    ||  ||||| | |||||||| ||||||||||||||||||| || |||||||||||||||||||||||||||| |||||||| | ||| ||||||||||      
T  6648367 tgagataagatcttcaaaagattttccaaactgaccttcctgatgacgtacttctgagggatctacctcataaaacactggcaaaaccaccagaccccta 6648268  T
Q  216 gttctgccaatttccattatcttctccaactctagcatacgccatcttgaattagcgtagtttgtagataaacccacaataaaaattctagagtgtccga 315  Q
    ||||| |||||||||||||||||| ||||||||||||||| |||||| |||||||| || |||||||| |||   |  ||  |||||||||| |||||||    
T  6648267 gttctaccaatttccattatcttcaccaactctagcatacaccatctggaattagcataatttgtagacaaaataatgatggaaattctagattgtccga 6648168  T
Q  316 ttgct 320  Q
    |||||    
T  6648167 ttgct 6648163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 17 - 320
Target Start/End: Original strand, 6591918 - 6592221
Alignment:
Q  17 aaataacctggaatctatgagtacaaaacctgctatgctaccaatatcgaagagttctcttttccaattactctttgtggattcatccactgagattgtt 116  Q
    ||||||||||||||||||||| ||||| |||||||| | ||||||||| |||||||||||||||||||||||||||||||||||||| |||||  || ||    
T  6591918 aaataacctggaatctatgaggacaaaccctgctattccaccaatatcaaagagttctcttttccaattactctttgtggattcatctactgaatttttt 6592017  T
Q  117 ggtataagtttttcaaaagcttttccaaactgaccttcccgacgacgtacttctgagggatctacctcatagaacactggtacaacaaccagacccccgg 216  Q
    | |||||| |  ||||||| ||| ||||||||||||||| || | ||||||||||| ||| |||||||||| || ||||| ||||| |||||||||| |     
T  6592018 gatataagatcatcaaaagatttcccaaactgaccttcctgatggcgtacttctgatggagctacctcataaaatactggcacaacgaccagacccctgt 6592117  T
Q  217 ttctgccaatttccattatcttctccaactctagcatacgccatcttgaattagcgtagtttgtagataaacccacaataaaaattctagagtgtccgat 316  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |||||||| ||| | || ||| || ||||||| ||| | ||    
T  6592118 ttctgccaatttccattatcttctccaactctagcatacaccatcttgaattagcataatttgtagacaaaacaacgatacaagttctagactgttcaat 6592217  T
Q  317 tgct 320  Q
    ||||    
T  6592218 tgct 6592221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 17 - 271
Target Start/End: Original strand, 6536756 - 6537010
Alignment:
Q  17 aaataacctggaatctatgagtacaaaacctgctatgctaccaatatcgaagagttctcttttccaattactctttgtggattcatccactgagattgtt 116  Q
    |||||||||||||||| |||||||||| |||||||||| ||||||||| | ||| |||||| |||||||||||||||||||||||||||| |||||||||    
T  6536756 aaataacctggaatctttgagtacaaaccctgctatgccaccaatatcaatgaggtctcttctccaattactctttgtggattcatccaccgagattgtt 6536855  T
Q  117 ggtataagtttttcaaaagcttttccaaactgaccttcccgacgacgtacttctgagggatctacctcatagaacactggtacaacaaccagacccccgg 216  Q
    | |||||| | |||||| |||||||||||   ||||| | || ||||||||||||||||||| ||||||||||||||||| ||||| |||||||||| ||    
T  6536856 gatataagatcttcaaaggcttttccaaaaccacctttctgatgacgtacttctgagggatccacctcatagaacactggcacaaccaccagacccctgg 6536955  T
Q  217 ttctgccaatttccattatcttctccaactctagcatacgccatcttgaattagc 271  Q
      |||||||||||||| |||||||||||||||||||||| |||||||||||||||    
T  6536956 ccctgccaatttccatgatcttctccaactctagcatacaccatcttgaattagc 6537010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 19 - 320
Target Start/End: Complemental strand, 6770835 - 6770534
Alignment:
Q  19 ataacctggaatctatgagtacaaaacctgctatgctaccaatatcgaagagttctcttttccaattactctttgtggattcatccactgagattgttgg 118  Q
    |||||||||||||||||||   |||||||| ||||| || ||||||||||| ||| ||| |||| |||||||||||||||||||||||||||||| |||     
T  6770835 ataacctggaatctatgagggtaaaacctgatatgccacaaatatcgaagatttcccttctccagttactctttgtggattcatccactgagatttttga 6770736  T
Q  119 tataagtttttcaaaagcttttccaaactgaccttcccgacgacgtacttctgagggatctacctcatagaacactggtacaacaaccagacccccggtt 218  Q
    |||||| |  |||||| |||| ||||||||||  | | || ||||||||||||| ||||| ||||||||||||||||| |||||||||| ||||| ||||    
T  6770735 tataagatcatcaaaacctttcccaaactgactgttctgatgacgtacttctgaaggatccacctcatagaacactggcacaacaaccaaacccctggtt 6770636  T
Q  219 ctgccaatttccattatcttctccaactctagcatacgccatcttgaattagcgtagtttgtagataaacccacaataaaaattctagagtgtccgattg 318  Q
    |||||||||||||| |||||||||||||||||||||| |||||| |||||||| || |||||||| ||| | || ||| |||||||||| ||||| ||||    
T  6770635 ctgccaatttccatgatcttctccaactctagcatacaccatctagaattagcataatttgtagagaaaacaactatagaaattctagactgtccaattg 6770536  T
Q  319 ct 320  Q
    ||    
T  6770535 ct 6770534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 17 - 307
Target Start/End: Complemental strand, 6813133 - 6812846
Alignment:
Q  17 aaataacctggaatctatgagtacaaaacctgctatgctaccaatatcgaagagttctcttttccaattactctttgtggattcatccactgagattgtt 116  Q
    |||||| |||||||||| ||||||||| |||||||||| |||||||| ||   |||||||||||||||||||||||||||||||||| | ||||||||||    
T  6813133 aaataaactggaatctaggagtacaaaccctgctatgccaccaatattga---gttctcttttccaattactctttgtggattcatctattgagattgtt 6813037  T
Q  117 ggtataagtttttcaaaagcttttccaaactgaccttcccgacgacgtacttctgagggatctacctcatagaacactggtacaacaaccagacccccgg 216  Q
    |  ||||| | ||| |||||||||||||| ||||||||  || ||||||||||||||||||||||||||||||| ||||||||||| |||| ||| ||||    
T  6813036 gacataagatcttccaaagcttttccaaattgaccttcttgatgacgtacttctgagggatctacctcatagaagactggtacaaccaccataccaccgg 6812937  T
Q  217 ttctgccaatttccattatcttctccaactctagcatacgccatcttgaattagcgtagtttgtagataaacccacaataaaaattctaga 307  Q
    |||| ||||||||||| |||||||||||||| | ||||| ||||||||||||||| || ||| | |||||| | || ||| ||||||||||    
T  6812936 ttcttccaatttccatgatcttctccaactcaaacatacaccatcttgaattagcataatttatcgataaaacaactatagaaattctaga 6812846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 20 - 320
Target Start/End: Complemental strand, 6833710 - 6833410
Alignment:
Q  20 taacctggaatctatgagtacaaaacctgctatgctaccaatatcgaagagttctcttttccaattactctttgtggattcatccactgagattgttggt 119  Q
    |||||||||| ||| ||||||||| || ||||||| ||||||||| ||||| |||||| |||||||||||||| |||||||||||| ||||||| | | |    
T  6833710 taacctggaacctaagagtacaaacccagctatgccaccaatatcaaagagatctcttctccaattactctttttggattcatccattgagattttcgat 6833611  T
Q  120 ataagtttttcaaaagcttttccaaactgaccttcccgacgacgtacttctgagggatctacctcatagaacactggtacaacaaccagacccccggttc 219  Q
    || |  |||| |||||||||||||||| |||||| | ||  |||||||||||||||| ||||||||||||||||||| |||||||  ||||||  |||||    
T  6833610 atcaactttttaaaagcttttccaaaccgacctttctgatcacgtacttctgagggagctacctcatagaacactggcacaacaataagacccttggttc 6833511  T
Q  220 tgccaatttccattatcttctccaactctagcatacgccatcttgaattagcgtagtttgtagataaacccacaataaaaattctagagtgtccgattgc 319  Q
    | |||||||||||||||||||||||||||||||||| |||||||||||| || || |||||||| ||| | |  ||| |||||||||| || || |||||    
T  6833510 ttccaatttccattatcttctccaactctagcatacaccatcttgaattggcataatttgtagacaaaacaatgatagaaattctagactgcccaattgc 6833411  T
Q  320 t 320  Q
    |    
T  6833410 t 6833410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 17 - 320
Target Start/End: Original strand, 6501043 - 6501346
Alignment:
Q  17 aaataacctggaatctatgagtacaaaacctgctatgctaccaatatcgaagagttctcttttccaattactctttgtggattcatccactgagattgtt 116  Q
    ||||||||||||||| ||||||||||  ||||||||||  ||||||||   ||| |||||| |||||| |||||| || || ||||||||||||||||||    
T  6501043 aaataacctggaatcaatgagtacaatgcctgctatgcccccaatatcactgaggtctcttctccaatcactcttggtagactcatccactgagattgtt 6501142  T
Q  117 ggtataagtttttcaaaagcttttccaaactgaccttcccgacgacgtacttctgagggatctacctcatagaacactggtacaacaaccagacccccgg 216  Q
    | |||||||| |||||||||||||||||||| ||||| | || |||||||||| |||||||||||||| ||||||||||| ||||| | |||| ||   |    
T  6501143 gatataagttcttcaaaagcttttccaaacttacctttctgatgacgtacttcagagggatctacctcgtagaacactggcacaacgatcagatccatag 6501242  T
Q  217 ttctgccaatttccattatcttctccaactctagcatacgccatcttgaattagcgtagtttgtagataaacccacaataaaaattctagagtgtccgat 316  Q
    ||||||||||||||||||||||| ||||||||||||||| |||||| ||||| || ||  ||||||| ||| | |||||| ||||||||||  | |||||    
T  6501243 ttctgccaatttccattatcttcaccaactctagcatacaccatctcgaattggcataagttgtagacaaaacaacaatagaaattctagaccgcccgat 6501342  T
Q  317 tgct 320  Q
    ||||    
T  6501343 tgct 6501346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 16 - 320
Target Start/End: Complemental strand, 6716824 - 6716520
Alignment:
Q  16 aaaataacctggaatctatgagtacaaaacctgctatgctaccaatatcgaagagttctcttttccaattactctttgtggattcatccactgagattgt 115  Q
    ||||| |||||||| |||  |||||||| || ||||||| ||||||||| ||||||| |||| |||||||||| | ||||||||||||||||||||| ||    
T  6716824 aaaattacctggaacctactagtacaaacccagctatgccaccaatatcaaagagttgtcttctccaattactatatgtggattcatccactgagatagt 6716725  T
Q  116 tggtataagtttttcaaaagcttttccaaactgaccttcccgacgacgtacttctgagggatctacctcatagaacactggtacaacaaccagacccccg 215  Q
    || || ||||| ||||||||||||||||||| |||||| | || | |||||||||||||||||||| |||||||| ||||| ||||| ||| ||||        
T  6716724 tgataaaagttcttcaaaagcttttccaaaccgacctttctgatgtcgtacttctgagggatctacatcatagaagactggcacaaccacccgaccgttc 6716625  T
Q  216 gttctgccaatttccattatcttctccaactctagcatacgccatcttgaattagcgtagtttgtagataaacccacaataaaaattctagagtgtccga 315  Q
     ||||||||| |||||| |||||||||||||||| ||||| ||||||||||||||| || |||||||| ||| | || ||| |||||||||| ||| | |    
T  6716624 attctgccaacttccatgatcttctccaactctaacatacaccatcttgaattagcataatttgtagacaaaacaacgatagaaattctagactgttcaa 6716525  T
Q  316 ttgct 320  Q
    |||||    
T  6716524 ttgct 6716520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 16 - 320
Target Start/End: Complemental strand, 6750267 - 6749963
Alignment:
Q  16 aaaataacctggaatctatgagtacaaaacctgctatgctaccaatatcgaagagttctcttttccaattactctttgtggattcatccactgagattgt 115  Q
    |||| ||||||||||||||||| ||||| || ||| ||| ||||||||| | ||| |||||| |||||||||||||||| |||||||||||||||||| |    
T  6750267 aaaaaaacctggaatctatgaggacaaacccagctgtgccaccaatatcaatgaggtctcttctccaattactctttgttgattcatccactgagatttt 6750168  T
Q  116 tggtataagtttttcaaaagcttttccaaactgaccttcccgacgacgtacttctgagggatctacctcatagaacactggtacaacaaccagacccccg 215  Q
    || |||||| |  |||||| |||| |||||||||||||   || |||| ||||||||||| || || |||||||||||||| |||||||| ||||||  |    
T  6750167 tgatataagatcgtcaaaacctttcccaaactgacctttttgatgacgcacttctgaggggtccacatcatagaacactggcacaacaactagacccttg 6750068  T
Q  216 gttctgccaatttccattatcttctccaactctagcatacgccatcttgaattagcgtagtttgtagataaacccacaataaaaattctagagtgtccga 315  Q
     |||| | ||||||||| |||||||||||||||||||||| ||||||||||||||| ||| ||||||| ||| | || ||| |||||||||| ||| | |    
T  6750067 tttctacaaatttccatgatcttctccaactctagcatacaccatcttgaattagcatagcttgtagacaaaacaacgatagaaattctagactgttcaa 6749968  T
Q  316 ttgct 320  Q
    |||||    
T  6749967 ttgct 6749963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 17 - 320
Target Start/End: Original strand, 6549081 - 6549384
Alignment:
Q  17 aaataacctggaatctatgagtacaaaacctgctatgctaccaatatcgaagagttctcttttccaattactctttgtggattcatccactgagattgtt 116  Q
    ||||||||| |||| |||||| ||||| |||| ||||| || |||||| ||||| |||||| |||||||||||||||| |||||||| |||||| || ||    
T  6549081 aaataaccttgaatttatgaggacaaaccctgatatgccacaaatatcaaagagctctcttctccaattactctttgttgattcatcaactgaggttttt 6549180  T
Q  117 ggtataagtttttcaaaagcttttccaaactgaccttcccgacgacgtacttctgagggatctacctcatagaacactggtacaacaaccagacccccgg 216  Q
    | |||||| |  |||||| |||| ||||| |||||||   || ||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |     
T  6549181 gatataagatcatcaaaacctttcccaaaatgacctttttgatgacgtacttctgagggatccacctcatagaacactggtacaacgaccagacccctgt 6549280  T
Q  217 ttctgccaatttccattatcttctccaactctagcatacgccatcttgaattagcgtagtttgtagataaacccacaataaaaattctagagtgtccgat 316  Q
    |||| ||||||||||| || ||||||||||| ||||||| |||||| |||||||| || ||| |||| ||| | || ||| |||||||||| ||||| ||    
T  6549281 ttctaccaatttccatgatgttctccaactcaagcatacaccatctagaattagcataatttttagacaaaacaacgatacaaattctagactgtccaat 6549380  T
Q  317 tgct 320  Q
    ||||    
T  6549381 tgct 6549384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 17 - 312
Target Start/End: Complemental strand, 6713059 - 6712764
Alignment:
Q  17 aaataacctggaatctatgagtacaaaacctgctatgctaccaatatcgaagagttctcttttccaattactctttgtggattcatccactgagattgtt 116  Q
    |||||||||||||||| ||| || ||| ||  || ||| ||||||||| | ||| |||||| |||||||||||||||||||||||||||||||||||  |    
T  6713059 aaataacctggaatctgtgactataaacccatctttgccaccaatatcaatgaggtctcttctccaattactctttgtggattcatccactgagatttct 6712960  T
Q  117 ggtataagtttttcaaaagcttttccaaactgaccttcccgacgacgtacttctgagggatctacctcatagaacactggtacaacaaccagacccccgg 216  Q
       ||||| | ||| |||||||||||||||||||||||  || ||||||||||||| |||||||||||||| |  ||||||||||| |||||||| ||||    
T  6712959 aagataagatcttccaaagcttttccaaactgaccttcttgatgacgtacttctgatggatctacctcataaaggactggtacaaccaccagaccaccgg 6712860  T
Q  217 ttctgccaatttccattatcttctccaactctagcatacgccatcttgaattagcgtagtttgtagataaacccacaataaaaattctagagtgtc 312  Q
    |||| ||||||||||| |||||||||||||| | ||||| ||||||||||||||| || ||| | || ||| | || ||| ||||||| |||||||    
T  6712859 ttcttccaatttccatgatcttctccaactcaaacatacaccatcttgaattagcataatttatcgacaaaacaactatagaaattcttgagtgtc 6712764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 77 - 315
Target Start/End: Original strand, 7889435 - 7889673
Alignment:
Q  77 tttccaattactctttgtggattcatccactgagattgttggtataagtttttcaaaagcttttccaaactgaccttcccgacgacgtacttctgaggga 176  Q
    ||||||||| ||||||||| |||||||||||||  |||| | || |||   ||||||||||||||||||||  |||  | || |||||||||| ||||||    
T  7889435 tttccaatttctctttgtgtattcatccactgattttgtagatagaagacattcaaaagcttttccaaactctcctgtctgatgacgtacttccgaggga 7889534  T
Q  177 tctacctcatagaacactggtacaacaaccagacccccggttctgccaatttccattatcttctccaactctagcatacgccatcttgaattagcgtagt 276  Q
    |||||||||||||||||||| ||||  |||| ||||  |||||| |  |||||||  ||  |||||||||||  ||||| |||| ||||||||||  |||    
T  7889535 tctacctcatagaacactggcacaagcaccatacccttggttctactgatttccacaattctctccaactctgtcatacaccattttgaattagcaaagt 7889634  T
Q  277 ttgtagataaacccacaataaaaattctagagtgtccga 315  Q
    || |||| | | | |||||| ||||| |||| |||||||    
T  7889635 ttttagacagaacaacaatagaaattttagactgtccga 7889673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 78 - 182
Target Start/End: Complemental strand, 10035054 - 10034950
Alignment:
Q  78 ttccaattactctttgtggattcatccactgagattgttggtataagtttttcaaaagcttttccaaactgaccttcccgacgacgtacttctgagggat 177  Q
    |||||||| ||||||||| ||||||||||||| ||||||| |||||| | ||||||||||| ||||||||  |||  | || |||||||||| |||||||    
T  10035054 ttccaattcctctttgtgtattcatccactgatattgttgatataagatattcaaaagcttctccaaactttcctgtctgatgacgtacttccgagggat 10034955  T
Q  178 ctacc 182  Q
    |||||    
T  10034954 ctacc 10034950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 317 - 363
Target Start/End: Complemental strand, 6625784 - 6625738
Alignment:
Q  317 tgctagagttggagaagataagggaaattagcagaaccgggggtctg 363  Q
    ||||||||||||||||||||| ||||||| |||||||||||||||||    
T  6625784 tgctagagttggagaagataatggaaattggcagaaccgggggtctg 6625738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 317 - 363
Target Start/End: Complemental strand, 6592153 - 6592107
Alignment:
Q  317 tgctagagttggagaagataagggaaattagcagaaccgggggtctg 363  Q
    ||||||||||||||||||||| ||||||| |||||| | ||||||||    
T  6592153 tgctagagttggagaagataatggaaattggcagaaacaggggtctg 6592107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 317 - 363
Target Start/End: Original strand, 6793527 - 6793573
Alignment:
Q  317 tgctagagttggagaagataagggaaattagcagaaccgggggtctg 363  Q
    ||||||||||||||||||||| ||||||| |||||| | ||||||||    
T  6793527 tgctagagttggagaagataatggaaattggcagaaacaggggtctg 6793573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0552 (Bit Score: 145; Significance: 3e-76; HSPs: 1)
Name: scaffold0552
Description:

Target: scaffold0552; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 17 - 307
Target Start/End: Complemental strand, 605 - 318
Alignment:
Q  17 aaataacctggaatctatgagtacaaaacctgctatgctaccaatatcgaagagttctcttttccaattactctttgtggattcatccactgagattgtt 116  Q
    |||||| |||||||||| ||||||||| |||||||||| |||||||| ||   |||||||||||||||||||||||||||||||||| | ||||||||||    
T  605 aaataaactggaatctaggagtacaaaccctgctatgccaccaatattga---gttctcttttccaattactctttgtggattcatctattgagattgtt 509  T
Q  117 ggtataagtttttcaaaagcttttccaaactgaccttcccgacgacgtacttctgagggatctacctcatagaacactggtacaacaaccagacccccgg 216  Q
    |  ||||| | ||| |||||||||||||| ||||||||  || ||||||||||||||||||||||||||||||| ||||||||||| |||| ||| ||||    
T  508 gacataagatcttccaaagcttttccaaattgaccttcttgatgacgtacttctgagggatctacctcatagaagactggtacaaccaccataccaccgg 409  T
Q  217 ttctgccaatttccattatcttctccaactctagcatacgccatcttgaattagcgtagtttgtagataaacccacaataaaaattctaga 307  Q
    |||| ||||||||||| |||||||||||||| | ||||| ||||||||||||||| || ||| | |||||| | || ||| ||||||||||    
T  408 ttcttccaatttccatgatcttctccaactcaaacatacaccatcttgaattagcataatttatcgataaaacaactatagaaattctaga 318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0373 (Bit Score: 127; Significance: 2e-65; HSPs: 1)
Name: scaffold0373
Description:

Target: scaffold0373; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 17 - 243
Target Start/End: Original strand, 12542 - 12768
Alignment:
Q  17 aaataacctggaatctatgagtacaaaacctgctatgctaccaatatcgaagagttctcttttccaattactctttgtggattcatccactgagattgtt 116  Q
    ||||||||||||||||||||| ||||| |||||||| | ||||||||| |||||||| |||||||||||| |||||| |||||||||||| || |||||     
T  12542 aaataacctggaatctatgagaacaaaccctgctataccaccaatatcaaagagttcacttttccaattagtctttggggattcatccacggaaattgta 12641  T
Q  117 ggtataagtttttcaaaagcttttccaaactgaccttcccgacgacgtacttctgagggatctacctcatagaacactggtacaacaaccagacccccgg 216  Q
    | |||||| |  ||||||||||| |||||  |||||||| || ||||||||||||||||| ||||||| || |||||||| |||||||||||||||| ||    
T  12642 gatataagatcatcaaaagctttcccaaatggaccttcctgatgacgtacttctgagggagctacctcgtaaaacactggcacaacaaccagacccctgg 12741  T
Q  217 ttctgccaatttccattatcttctcca 243  Q
    |||||||||||||||||||||||||||    
T  12742 ttctgccaatttccattatcttctcca 12768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0813 (Bit Score: 125; Significance: 3e-64; HSPs: 1)
Name: scaffold0813
Description:

Target: scaffold0813; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 16 - 320
Target Start/End: Original strand, 1852 - 2156
Alignment:
Q  16 aaaataacctggaatctatgagtacaaaacctgctatgctaccaatatcgaagagttctcttttccaattactctttgtggattcatccactgagattgt 115  Q
    ||||| |||||||| |||  |||||||| || ||||||| ||||||||| ||||||| |||| |||||||||| | ||||||||||||||||||||| ||    
T  1852 aaaattacctggaacctactagtacaaacccagctatgccaccaatatcaaagagttgtcttctccaattactatatgtggattcatccactgagatagt 1951  T
Q  116 tggtataagtttttcaaaagcttttccaaactgaccttcccgacgacgtacttctgagggatctacctcatagaacactggtacaacaaccagacccccg 215  Q
    || || ||||| ||||||||||||||||||| |||||| | || | |||||||||||||||||||| |||||||| ||||| ||||| ||| ||||        
T  1952 tgataaaagttcttcaaaagcttttccaaaccgacctttctgatgtcgtacttctgagggatctacatcatagaagactggcacaaccacccgaccgttc 2051  T
Q  216 gttctgccaatttccattatcttctccaactctagcatacgccatcttgaattagcgtagtttgtagataaacccacaataaaaattctagagtgtccga 315  Q
     ||||||||| |||||| |||||||||||||||| ||||| ||||||||||||||| || |||||||| ||| | || ||| |||||||||| ||| | |    
T  2052 attctgccaacttccatgatcttctccaactctaacatacaccatcttgaattagcataatttgtagacaaaacaacgatagaaattctagactgttcaa 2151  T
Q  316 ttgct 320  Q
    |||||    
T  2152 ttgct 2156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 162 - 313
Target Start/End: Original strand, 34734179 - 34734330
Alignment:
Q  162 cgtacttctgagggatctacctcatagaacactggtacaacaaccagacccccggttctgccaatttccattatcttctccaactctagcatacgccatc 261  Q
    |||||||||| ||||||||  | |||||||||||||||||| |||| ||||  |||||||| | |  |||| || ||||||| ||||||||||| |||||    
T  34734179 cgtacttctgtgggatctattttatagaacactggtacaaccaccataccctgggttctgctattgcccatgatattctccagctctagcatacaccatc 34734278  T
Q  262 ttgaattagcgtagtttgtagataaacccacaataaaaattctagagtgtcc 313  Q
    |||||||||| |||||| |||| ||| | |  ||| |||||||||| |||||    
T  34734279 ttgaattagcatagtttctagacaaaacaatgatagaaattctagactgtcc 34734330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 162 - 268
Target Start/End: Original strand, 34719714 - 34719820
Alignment:
Q  162 cgtacttctgagggatctacctcatagaacactggtacaacaaccagacccccggttctgccaatttccattatcttctccaactctagcatacgccatc 261  Q
    |||||||||||||||| |||||||||||||||||||| ||| |||||| ||| | |||| |||  |||||| || | |||||||||| |||||| |||||    
T  34719714 cgtacttctgagggatttacctcatagaacactggtataaccaccagatccctgcttcttccacattccatgatttgctccaactcttgcatacaccatc 34719813  T
Q  262 ttgaatt 268  Q
    |||||||    
T  34719814 ttgaatt 34719820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 162 - 271
Target Start/End: Complemental strand, 18925725 - 18925616
Alignment:
Q  162 cgtacttctgagggatctacctcatagaacactggtacaacaaccagacccccggttctgccaatttccattatcttctccaactctagcatacgccatc 261  Q
    ||||||||||||||||||||||||||||||||||||| ||| | | ||||| |  |||||| || || ||| || || |||||||||  ||||| |||||    
T  18925725 cgtacttctgagggatctacctcatagaacactggtataaccatccgaccctcccttctgctaactttcatgatgttgtccaactctgacatacaccatc 18925626  T
Q  262 ttgaattagc 271  Q
    ||||||||||    
T  18925625 ttgaattagc 18925616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 162 - 267
Target Start/End: Original strand, 34729615 - 34729720
Alignment:
Q  162 cgtacttctgagggatctacctcatagaacactggtacaacaaccagacccccggttctgccaatttccattatcttctccaactctagcatacgccatc 261  Q
    ||||| |||||||||||||  |||||||||||||||||||| |||| ||||  |||||||| | |  |||| || ||||||| ||||||||||| |||||    
T  34729615 cgtacctctgagggatctatttcatagaacactggtacaaccaccataccctgggttctgctattgcccatgatgttctccagctctagcatacaccatc 34729714  T
Q  262 ttgaat 267  Q
    ||||||    
T  34729715 ttgaat 34729720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 164 - 259
Target Start/End: Original strand, 34714953 - 34715048
Alignment:
Q  164 tacttctgagggatctacctcatagaacactggtacaacaaccagacccccggttctgccaatttccattatcttctccaactctagcatacgcca 259  Q
    |||||||||||||||||||||||| |||||||||| ||| |||| ||||| |  ||||| |  || ||| || | |||||||||| ||||||||||    
T  34714953 tacttctgagggatctacctcataaaacactggtataaccaccaaaccccagcgtctgcgacatttcatgatttcctccaactcttgcatacgcca 34715048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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