View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15574_high_12 (Length: 258)

Name: NF15574_high_12
Description: NF15574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15574_high_12
NF15574_high_12
[»] chr1 (29 HSPs)
chr1 (20-234)||(35948779-35948993)
chr1 (111-231)||(32885860-32885981)
chr1 (124-234)||(30558911-30559020)
chr1 (113-231)||(170347-170461)
chr1 (82-150)||(17875557-17875625)
chr1 (126-231)||(30054984-30055088)
chr1 (113-231)||(41753115-41753234)
chr1 (113-179)||(41971284-41971348)
chr1 (113-173)||(32981040-32981098)
chr1 (126-236)||(25017544-25017653)
chr1 (93-231)||(14499060-14499198)
chr1 (99-150)||(31867477-31867528)
chr1 (126-235)||(48606520-48606628)
chr1 (119-231)||(11843796-11843911)
chr1 (68-231)||(22891985-22892147)
chr1 (126-231)||(26272837-26272941)
chr1 (121-175)||(52753718-52753770)
chr1 (77-151)||(7434547-7434621)
chr1 (113-151)||(42309934-42309972)
chr1 (113-179)||(15209319-15209381)
chr1 (126-236)||(40864626-40864736)
chr1 (118-175)||(51053189-51053246)
chr1 (153-236)||(17874936-17875020)
chr1 (116-175)||(33490457-33490514)
chr1 (77-169)||(44586017-44586109)
chr1 (34-76)||(45761387-45761430)
chr1 (120-173)||(320711-320762)
chr1 (77-139)||(26159361-26159423)
chr1 (116-149)||(17446433-17446466)
[»] chr5 (22 HSPs)
chr5 (77-232)||(204012-204168)
chr5 (113-236)||(23244464-23244587)
chr5 (77-150)||(2985846-2985919)
chr5 (126-231)||(1280744-1280848)
chr5 (77-151)||(26282281-26282355)
chr5 (77-150)||(4306673-4306746)
chr5 (77-150)||(15497447-15497520)
chr5 (83-150)||(14317129-14317196)
chr5 (75-150)||(15917444-15917519)
chr5 (126-231)||(27168711-27168815)
chr5 (77-151)||(36292573-36292647)
chr5 (113-177)||(192847-192909)
chr5 (113-172)||(13819086-13819143)
chr5 (113-171)||(1775367-1775423)
chr5 (113-151)||(16156036-16156074)
chr5 (113-168)||(39435826-39435879)
chr5 (126-236)||(8785940-8786046)
chr5 (113-179)||(28801949-28802013)
chr5 (132-223)||(22712814-22712903)
chr5 (121-231)||(3055645-3055754)
chr5 (113-149)||(31500711-31500747)
chr5 (113-172)||(39656519-39656576)
[»] chr6 (17 HSPs)
chr6 (92-236)||(24074570-24074715)
chr6 (113-231)||(1296672-1296790)
chr6 (110-191)||(3051063-3051148)
chr6 (121-226)||(30621332-30621437)
chr6 (126-231)||(32441882-32441986)
chr6 (126-236)||(11971117-11971226)
chr6 (126-231)||(25599318-25599422)
chr6 (77-150)||(26218297-26218370)
chr6 (77-150)||(34385004-34385077)
chr6 (76-151)||(399745-399820)
chr6 (99-150)||(21148918-21148969)
chr6 (80-151)||(34947796-34947867)
chr6 (74-150)||(13647614-13647690)
chr6 (113-175)||(12180415-12180475)
chr6 (113-151)||(34253242-34253280)
chr6 (93-150)||(2753829-2753886)
chr6 (135-179)||(31028005-31028047)
[»] scaffold0019 (1 HSPs)
scaffold0019 (77-231)||(134712-134866)
[»] chr7 (27 HSPs)
chr7 (110-236)||(26493603-26493731)
chr7 (77-231)||(19400141-19400298)
chr7 (77-235)||(10224050-10224209)
chr7 (77-231)||(45197806-45197957)
chr7 (126-219)||(9230574-9230666)
chr7 (75-236)||(27387163-27387323)
chr7 (126-226)||(9557856-9557955)
chr7 (83-190)||(47729928-47730033)
chr7 (126-231)||(26782219-26782326)
chr7 (77-166)||(14775547-14775634)
chr7 (77-166)||(15226000-15226087)
chr7 (126-231)||(25024686-25024789)
chr7 (77-150)||(22937701-22937774)
chr7 (68-231)||(40702960-40703122)
chr7 (126-179)||(11019617-11019668)
chr7 (77-150)||(38826023-38826096)
chr7 (153-236)||(13715120-13715204)
chr7 (72-171)||(36631938-36632035)
chr7 (113-171)||(8395287-8395343)
chr7 (126-231)||(25491542-25491646)
chr7 (111-150)||(37966173-37966212)
chr7 (130-234)||(18375564-18375666)
chr7 (110-151)||(3113122-3113163)
chr7 (132-231)||(14088911-14089009)
chr7 (132-231)||(14398929-14399027)
chr7 (113-179)||(34468363-34468427)
chr7 (113-149)||(36659301-36659337)
[»] chr4 (46 HSPs)
chr4 (77-214)||(6255346-6255484)
chr4 (82-231)||(42843873-42844023)
chr4 (77-231)||(12211085-12211238)
chr4 (126-231)||(53692942-53693046)
chr4 (82-231)||(55464522-55464672)
chr4 (77-178)||(31002586-31002685)
chr4 (76-150)||(37236116-37236190)
chr4 (126-231)||(1147662-1147766)
chr4 (72-151)||(43357037-43357116)
chr4 (77-151)||(20130371-20130445)
chr4 (77-151)||(34406245-34406319)
chr4 (126-236)||(4325569-4325678)
chr4 (156-231)||(8897862-8897938)
chr4 (99-150)||(5516955-5517006)
chr4 (99-150)||(6211552-6211603)
chr4 (76-151)||(13013321-13013396)
chr4 (76-231)||(25182733-25182891)
chr4 (99-150)||(49908238-49908289)
chr4 (77-151)||(26438240-26438314)
chr4 (77-151)||(29319321-29319395)
chr4 (77-151)||(47501905-47501979)
chr4 (93-150)||(3239639-3239696)
chr4 (113-172)||(13390447-13390504)
chr4 (113-149)||(13398556-13398592)
chr4 (113-168)||(17510245-17510298)
chr4 (76-171)||(40530197-40530290)
chr4 (95-150)||(20116727-20116782)
chr4 (113-171)||(25931865-25931921)
chr4 (112-150)||(12679746-12679784)
chr4 (126-179)||(17359348-17359399)
chr4 (77-139)||(17555450-17555512)
chr4 (124-236)||(21753535-21753646)
chr4 (124-231)||(3074532-3074638)
chr4 (72-128)||(11826931-11826987)
chr4 (113-172)||(33135432-33135489)
chr4 (113-172)||(36381338-36381395)
chr4 (113-149)||(44157765-44157801)
chr4 (114-172)||(6236579-6236635)
chr4 (113-175)||(30111039-30111099)
chr4 (130-231)||(31944779-31944879)
chr4 (113-151)||(26449822-26449860)
chr4 (112-150)||(34770374-34770412)
chr4 (113-151)||(37577897-37577935)
chr4 (113-150)||(50719967-50720004)
chr4 (113-168)||(29994996-29995049)
chr4 (113-149)||(50204082-50204118)
[»] chr3 (24 HSPs)
chr3 (83-231)||(51408472-51408621)
chr3 (126-235)||(24988721-24988829)
chr3 (72-150)||(6891489-6891567)
chr3 (77-236)||(31989187-31989345)
chr3 (113-179)||(1185537-1185602)
chr3 (118-231)||(50091430-50091542)
chr3 (123-226)||(15668113-15668215)
chr3 (77-150)||(19269162-19269235)
chr3 (77-150)||(48757334-48757407)
chr3 (113-175)||(34083111-34083171)
chr3 (96-151)||(39772921-39772976)
chr3 (126-235)||(43137285-43137393)
chr3 (77-151)||(22967395-22967469)
chr3 (126-212)||(3856775-3856860)
chr3 (93-191)||(53710602-53710698)
chr3 (82-150)||(51817860-51817928)
chr3 (113-179)||(5136366-5136430)
chr3 (113-151)||(27936279-27936317)
chr3 (113-151)||(40080745-40080783)
chr3 (126-236)||(37381776-37381886)
chr3 (126-177)||(17073900-17073949)
chr3 (82-150)||(19237612-19237680)
chr3 (110-150)||(21434418-21434458)
chr3 (123-151)||(42964803-42964831)
[»] chr2 (32 HSPs)
chr2 (113-236)||(1954987-1955111)
chr2 (82-150)||(26655691-26655759)
chr2 (123-236)||(31392954-31393065)
chr2 (77-151)||(41250588-41250662)
chr2 (77-151)||(6402768-6402842)
chr2 (93-179)||(18425829-18425915)
chr2 (154-231)||(34907745-34907823)
chr2 (124-231)||(33453094-33453200)
chr2 (110-150)||(40653797-40653837)
chr2 (82-150)||(42755575-42755643)
chr2 (113-175)||(4554331-4554391)
chr2 (123-231)||(12539736-12539843)
chr2 (187-236)||(13309747-13309796)
chr2 (93-150)||(39368562-39368619)
chr2 (113-179)||(7071558-7071622)
chr2 (113-166)||(17090259-17090310)
chr2 (113-151)||(17444023-17444061)
chr2 (110-150)||(34907879-34907919)
chr2 (82-150)||(35649539-35649607)
chr2 (154-234)||(39368452-39368532)
chr2 (113-172)||(42443095-42443152)
chr2 (113-151)||(16406252-16406290)
chr2 (113-166)||(17035748-17035799)
chr2 (113-151)||(26161734-26161772)
chr2 (126-179)||(26238689-26238740)
chr2 (73-151)||(35963814-35963892)
chr2 (113-151)||(45122236-45122274)
chr2 (96-149)||(8058323-8058376)
chr2 (82-151)||(18982669-18982738)
chr2 (126-174)||(19951740-19951786)
chr2 (126-174)||(45261753-45261799)
chr2 (114-150)||(13309810-13309846)
[»] chr8 (30 HSPs)
chr8 (125-236)||(28846763-28846873)
chr8 (76-231)||(21958675-21958831)
chr8 (77-231)||(24592196-24592349)
chr8 (121-231)||(42447088-42447196)
chr8 (126-231)||(10467914-10468018)
chr8 (77-166)||(24019355-24019442)
chr8 (77-151)||(28524327-28524401)
chr8 (77-166)||(39915630-39915717)
chr8 (77-150)||(17839572-17839645)
chr8 (121-231)||(9256552-9256661)
chr8 (86-232)||(10014318-10014448)
chr8 (77-151)||(29632517-29632591)
chr8 (77-150)||(5637567-5637640)
chr8 (77-235)||(40145869-40146026)
chr8 (117-179)||(40469900-40469960)
chr8 (139-231)||(2826227-2826318)
chr8 (113-151)||(29727381-29727419)
chr8 (153-234)||(32359582-32359664)
chr8 (117-175)||(3436312-3436369)
chr8 (98-150)||(10395994-10396046)
chr8 (121-231)||(13152297-13152406)
chr8 (126-231)||(24333880-24333984)
chr8 (153-231)||(32342979-32343058)
chr8 (153-231)||(32355466-32355545)
chr8 (113-151)||(27046945-27046983)
chr8 (126-175)||(27190991-27191038)
chr8 (113-150)||(34845246-34845283)
chr8 (113-172)||(3647779-3647835)
chr8 (113-149)||(7279168-7279204)
chr8 (77-141)||(39532487-39532551)
[»] scaffold0015 (1 HSPs)
scaffold0015 (76-231)||(214017-214173)
[»] scaffold0170 (1 HSPs)
scaffold0170 (113-231)||(9239-9358)
[»] scaffold0726 (1 HSPs)
scaffold0726 (126-235)||(1042-1150)
[»] scaffold0069 (1 HSPs)
scaffold0069 (77-151)||(18699-18773)
[»] scaffold0002 (1 HSPs)
scaffold0002 (77-151)||(479418-479492)
[»] scaffold0178 (2 HSPs)
scaffold0178 (82-144)||(21949-22011)
scaffold0178 (82-144)||(27451-27513)


Alignment Details
Target: chr1 (Bit Score: 179; Significance: 1e-96; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 20 - 234
Target Start/End: Original strand, 35948779 - 35948993
Alignment:
Q  20 atctccgacccttgtatatattatgaaatatcttatcaattgaactaagctcacaaacagttgcggagccataaattttatagagcctatgcgaaaaatt 119  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||| ||| ||| |||||||||| || ||||||||||    
T  35948779 atctccgacccttgtatatattatgaaatattttatcaattgaactaagcttacaaacagtggcggaaccaaaaaatttatagagcataggcgaaaaatt 35948878  T
Q  120 tatcgtaaattcacatgtgacataatatataataatagtcataaatcaaaataaaagaggatcgccatttttctataatagtacagtttgaaatacgaga 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  35948879 tatcgtaaattcacatgtgacataatatataataatagtcataaatcaaaataaaagaggatcgtcatttttctataatagtacagtttgaaatacgaga 35948978  T
Q  220 gatgaaatataatct 234  Q
    |||||||||||||||    
T  35948979 gatgaaatataatct 35948993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 111 - 231
Target Start/End: Original strand, 32885860 - 32885981
Alignment:
Q  111 cgaaaaatttatcgtaaattcacatgtgacataatatataataatagtcataaatcaaaataaaagaggatcgccattt-ttctataatagtacagtttg 209  Q
    |||||||||||||| |||||||||||||||||||||||||  |||| |||||||||||| ||||||||||| | ||||| ||||| |  |||||| |||     
T  32885860 cgaaaaatttatcgcaaattcacatgtgacataatatatataaataatcataaatcaaattaaaagaggattgtcatttattctacataagtacacttta 32885959  T
Q  210 aaatacgagagatgaaatataa 231  Q
    ||||| ||||||||||||||||    
T  32885960 aaataagagagatgaaatataa 32885981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 124 - 234
Target Start/End: Original strand, 30558911 - 30559020
Alignment:
Q  124 gtaaattcacatgtgacataatatataataatagtcataaatcaaaataaaagaggatcgccatttt-tctataatagtacagtttgaaatacgagagat 222  Q
    |||||||||||||||||||||||||||  ||||||||||||||||||||||||||| ||  |||||| || |||| |||||| ||||||||| |||||||    
T  30558911 gtaaattcacatgtgacataatatata--aatagtcataaatcaaaataaaagaggctcatcattttgtcaataaaagtacaatttgaaataagagagat 30559008  T
Q  223 gaaatataatct 234  Q
    |||| |||||||    
T  30559009 gaaacataatct 30559020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 113 - 231
Target Start/End: Original strand, 170347 - 170461
Alignment:
Q  113 aaaaatttatcgtaaattcacatgtgacataatatataataatagtcataaatcaaaataaaagaggatcgccatttttctataatagtacagtttgaaa 212  Q
    |||||||||||| ||||| |||||||||||||||||||  |||||||||||||| |||||||||||| ||| |    ||  | || ||||||||||||||    
T  170347 aaaaatttatcgcaaatttacatgtgacataatatatataaatagtcataaatcgaaataaaagaggttcgac----tttaacaaaagtacagtttgaaa 170442  T
Q  213 tacgagagatgaaatataa 231  Q
    || | ||||||||||||||    
T  170443 taagtgagatgaaatataa 170461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 82 - 150
Target Start/End: Complemental strand, 17875625 - 17875557
Alignment:
Q  82 gcggagccataaattttatagagcctatgcgaaaaatttatcgtaaattcacatgtgacataatatata 150  Q
    ||||||||||||||||||||||| ||  || |||||||||||| |||||||||||||||||||||||||    
T  17875625 gcggagccataaattttatagagtctgggcaaaaaatttatcgcaaattcacatgtgacataatatata 17875557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 126 - 231
Target Start/End: Complemental strand, 30055088 - 30054984
Alignment:
Q  126 aaattcacatgtgacataatatataataatagtcataaatcaaaataaaagaggatcgccatttt-tctataatagtacagtttgaaatacgagagatga 224  Q
    |||||||||| |||||||||||||||  |||||||||||||||||||||||||  |||| ||||| || |||| |||||| ||| ||||| |||||||||    
T  30055088 aaattcacatatgacataatatataa--atagtcataaatcaaaataaaagagactcgcaattttgtcaataaaagtacaatttaaaataagagagatga 30054991  T
Q  225 aatataa 231  Q
    || ||||    
T  30054990 aacataa 30054984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 113 - 231
Target Start/End: Complemental strand, 41753234 - 41753115
Alignment:
Q  113 aaaaatttatcgtaaattcacatgtgacataatatataataatagtcataaatcaaaataaaagaggatcgccattttt-ctataatagtacagtttgaa 211  Q
    |||||||||||  ||||||| |||||||||||||||||  |||||||| ||||| |||||||||||| ||  ||||||| | | || | |||| ||||||    
T  41753234 aaaaatttatcacaaattcatatgtgacataatatatataaatagtcagaaatcgaaataaaagaggttcatcatttttacaacaaaaatacaatttgaa 41753135  T
Q  212 atacgagagatgaaatataa 231  Q
    ||| ||||||| ||||||||    
T  41753134 ataagagagataaaatataa 41753115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 113 - 179
Target Start/End: Original strand, 41971284 - 41971348
Alignment:
Q  113 aaaaatttatcgtaaattcacatgtgacataatatataataatagtcataaatcaaaataaaagagg 179  Q
    |||||||||||| |||||||||||||||||||||||||  || |||||||| |||||||||||||||    
T  41971284 aaaaatttatcgcaaattcacatgtgacataatatata--aacagtcataactcaaaataaaagagg 41971348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 113 - 173
Target Start/End: Original strand, 32981040 - 32981098
Alignment:
Q  113 aaaaatttatcgtaaattcacatgtgacataatatataataatagtcataaatcaaaataa 173  Q
    ||||||| ||||||||||||||||||||||||||||||  |||||||||||||| ||||||    
T  32981040 aaaaattaatcgtaaattcacatgtgacataatatata--aatagtcataaatcgaaataa 32981098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 126 - 236
Target Start/End: Complemental strand, 25017653 - 25017544
Alignment:
Q  126 aaattcacatgtgacataatatataataatagtcataaatcaaaataaaagaggatcgccatttt-tctataatagtacagtttgaaatacgagagatga 224  Q
    ||||| ||||||||||||||||||||  ||||||||||||| |||||||||||| | | |||||| || |||| | |||| ||||||||| ||||||||     
T  25017653 aaatttacatgtgacataatatataa--atagtcataaatcgaaataaaagaggcttgtcattttgtcgataaaaatacaatttgaaataagagagatgt 25017556  T
Q  225 aatataatctgt 236  Q
     |||||| ||||    
T  25017555 gatataacctgt 25017544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 93 - 231
Target Start/End: Complemental strand, 14499198 - 14499060
Alignment:
Q  93 aattttatagagcctatgcgaaaaatttatcgtaaattcacatgtgacataatatataataatagtcataaatcaaaataaaagaggatcgccatttt-t 191  Q
    |||||||| ||||||| |  |||| || |||| ||||||||||| |||||||||||| | ||||||| |||||   ||||||||||| ||  |||||| |    
T  14499198 aattttatcgagcctaggaaaaaatttgatcgcaaattcacatgcgacataatatatta-aatagtcttaaattgtaataaaagaggctcatcattttat 14499100  T
Q  192 ctataatagtacagtttgaaatacgagagatgaaatataa 231  Q
    | |||| |||||| ||||||||| ||||||||||| ||||    
T  14499099 cgataaaagtacaatttgaaataagagagatgaaacataa 14499060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 99 - 150
Target Start/End: Complemental strand, 31867528 - 31867477
Alignment:
Q  99 atagagcctatgcgaaaaatttatcgtaaattcacatgtgacataatatata 150  Q
    |||||||||  ||||||||||||||| |||||||||||||||||||||||||    
T  31867528 atagagcctgggcgaaaaatttatcgcaaattcacatgtgacataatatata 31867477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 126 - 235
Target Start/End: Original strand, 48606520 - 48606628
Alignment:
Q  126 aaattcacatgtgacataatatataataatagtcataaatcaaaataaaagaggatcgccattttt-ctataatagtacagtttgaaatacgagagatga 224  Q
    |||||||||||| |||||||||||||  ||||||||||||  ||||||||||   ||| ||||||| | |||| |||||| ||||||| | |||||||||    
T  48606520 aaattcacatgtaacataatatataa--atagtcataaattgaaataaaagaaactcgtcattttttcgataaaagtacaatttgaaacaagagagatga 48606617  T
Q  225 aatataatctg 235  Q
    || ||||||||    
T  48606618 aacataatctg 48606628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 119 - 231
Target Start/End: Original strand, 11843796 - 11843911
Alignment:
Q  119 ttatcgtaaattcacatgtgacataatatataataatagtcataaatcaaaataaaagaggatcgccatttttct---ataatagtacagtttgaaatac 215  Q
    |||||| |||||| ||||| ||||||||||||  |||||||||||||  |||||||| ||| ||| ||||||| |   | || |||||| |||||||||     
T  11843796 ttatcgcaaattcgcatgtaacataatatatataaatagtcataaattgaaataaaaaaggttcgtcatttttttttaacaaaagtacaatttgaaataa 11843895  T
Q  216 gagagatgaaatataa 231  Q
    || |||||||||||||    
T  11843896 gatagatgaaatataa 11843911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 68 - 231
Target Start/End: Complemental strand, 22892147 - 22891985
Alignment:
Q  68 gctcacaaacagttgcggagccataaattttatagagcctatgcgaaaaatttatcgtaaattcacatgtgacataatatataataatagtcataaatca 167  Q
    |||| ||| |||| ||||| ||||||||||||| ||||||| || |||  || | |  ||||||||||||| || ||||||||  ||||| |||||||||    
T  22892147 gctcccaaccagtggcggaaccataaattttatcgagcctaggcaaaattttgacctcaaattcacatgtgccacaatatata--aatagacataaatca 22892050  T
Q  168 aaataaaagaggatcgccatttt-tctataatagtacagtttgaaatacgagagatgaaatataa 231  Q
    ||||| || ||| |||  ||||| || |||| |||||| ||| ||||| ||||||||||| ||||    
T  22892049 aaatataataggctcgttattttgtcgataaaagtacaatttaaaataagagagatgaaacataa 22891985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 126 - 231
Target Start/End: Original strand, 26272837 - 26272941
Alignment:
Q  126 aaattcacatgtgacataatatataataatagtcataaatcaaaataaaagaggatcgccatttt-tctataatagtacagtttgaaatacgagagatga 224  Q
    ||||| ||||||||||| ||||||||  ||||||||||||| |||||||| ||| ||| | |||| || | || |||||| ||||||||| |||| ||||    
T  26272837 aaatttacatgtgacatgatatataa--atagtcataaatcgaaataaaaaaggttcgtctttttgtcaacaaaagtacaatttgaaataagagatatga 26272934  T
Q  225 aatataa 231  Q
    |||||||    
T  26272935 aatataa 26272941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 121 - 175
Target Start/End: Original strand, 52753718 - 52753770
Alignment:
Q  121 atcgtaaattcacatgtgacataatatataataatagtcataaatcaaaataaaa 175  Q
    |||||||||||||||| |||||||||||||  |||||||||||||| ||||||||    
T  52753718 atcgtaaattcacatgcgacataatatata--aatagtcataaatcgaaataaaa 52753770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 77 - 151
Target Start/End: Complemental strand, 7434621 - 7434547
Alignment:
Q  77 cagttgcggagccataaattttatagagcctatgcgaaaaatttatcgtaaattcacatgtgacataatatataa 151  Q
    |||| |||||||||  || ||||| |||||   |||||||||| ||||||||||||||||||| |||||||||||    
T  7434621 cagtggcggagccaggaaatttatggagcccgggcgaaaaattaatcgtaaattcacatgtgatataatatataa 7434547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 113 - 151
Target Start/End: Original strand, 42309934 - 42309972
Alignment:
Q  113 aaaaatttatcgtaaattcacatgtgacataatatataa 151  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  42309934 aaaaattaatcgtaaattcacatgtgacataatatataa 42309972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 113 - 179
Target Start/End: Original strand, 15209319 - 15209381
Alignment:
Q  113 aaaaatttatcgtaaattcacatgtgacataatatataataatagtcataaatcaaaataaaagagg 179  Q
    |||| |||| || ||||||||||||||||||||||||||    ||||||||||| ||||||||||||    
T  15209319 aaaattttaacgcaaattcacatgtgacataatatataa----agtcataaatcgaaataaaagagg 15209381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 126 - 236
Target Start/End: Original strand, 40864626 - 40864736
Alignment:
Q  126 aaattcacatgtgacataatatataataatagtcat-aaatcaaaataaaagaggatcgccatttt-tctataatagtacagtttgaaatacgagagatg 223  Q
    ||||| |||||||||||||||||||  ||||||||| ||||| ||||||||| |  ||| |||||| || |||| |||||| ||||||||| ||||||||    
T  40864626 aaatttacatgtgacataatatata--aatagtcataaaatcgaaataaaagtgactcgtcattttgtcgataaaagtacaatttgaaataagagagatg 40864723  T
Q  224 aaatataatctgt 236  Q
     || |||| ||||    
T  40864724 taacataacctgt 40864736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 118 - 175
Target Start/End: Complemental strand, 51053246 - 51053189
Alignment:
Q  118 tttatcgtaaattcacatgtgacataatatataataatagtcataaatcaaaataaaa 175  Q
    |||||||||||||||||| ||||||||||||||  || ||| ||||||| ||||||||    
T  51053246 tttatcgtaaattcacatatgacataatatatataaaaagttataaatcgaaataaaa 51053189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 236
Target Start/End: Complemental strand, 17875020 - 17874936
Alignment:
Q  153 aatagtcataaatcaaaataaaagaggatcgccatttt-tctataatagtacagtttgaaatacgagagatgaaatataatctgt 236  Q
    |||||||||||||| ||||| |||| | ||| |||||| || | || |||||| ||| ||||| |||||||||||||||||||||    
T  17875020 aatagtcataaatcgaaatagaagaagttcgtcattttatcaacaaaagtacaatttaaaataagagagatgaaatataatctgt 17874936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 175
Target Start/End: Complemental strand, 33490514 - 33490457
Alignment:
Q  116 aatttatcgtaaattcacatgtgacataatatataataatagtcataaatcaaaataaaa 175  Q
    ||||||| | ||||||||||| |||||||||||||  |||||||||||||| ||||||||    
T  33490514 aatttatagcaaattcacatgcgacataatatata--aatagtcataaatcgaaataaaa 33490457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 169
Target Start/End: Original strand, 44586017 - 44586109
Alignment:
Q  77 cagttgcggagccataaattttatagagcctatgcgaaaaatttatcgtaaattcacatgtgacataatatataataatagtcataaatcaaa 169  Q
    |||| |||||||||| ||||||| |||||||  || ||   |||||||   |||||||||||||||||||||||  |||||||||| ||||||    
T  44586017 cagtggcggagccatgaattttacagagcctgggcaaattttttatcgcttattcacatgtgacataatatatataaatagtcatatatcaaa 44586109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 34 - 76
Target Start/End: Complemental strand, 45761430 - 45761387
Alignment:
Q  34 tatatattatgaaatatctt-atcaattgaactaagctcacaaa 76  Q
    ||||||||||| |||||||| |||||||||||||||||||||||    
T  45761430 tatatattatgcaatatctttatcaattgaactaagctcacaaa 45761387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 173
Target Start/End: Original strand, 320711 - 320762
Alignment:
Q  120 tatcgtaaattcacatgtgacataatatataataatagtcataaatcaaaataa 173  Q
    ||||| |||||||||||||||||||||||||||   ||||||||||| ||||||    
T  320711 tatcgcaaattcacatgtgacataatatataat--cagtcataaatcgaaataa 320762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 139
Target Start/End: Complemental strand, 26159423 - 26159361
Alignment:
Q  77 cagttgcggagccataaattttatagagcctatgcgaaaaatttatcgtaaattcacatgtga 139  Q
    |||| |||||||||  || ||||| ||||||  |||||||||| |||||||||||||||||||    
T  26159423 cagtggcggagccaggaaatttatggagcctgggcgaaaaattaatcgtaaattcacatgtga 26159361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 116 - 149
Target Start/End: Complemental strand, 17446466 - 17446433
Alignment:
Q  116 aatttatcgtaaattcacatgtgacataatatat 149  Q
    ||||||||| ||||||||||||||||||||||||    
T  17446466 aatttatcgcaaattcacatgtgacataatatat 17446433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 105; Significance: 2e-52; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 77 - 232
Target Start/End: Complemental strand, 204168 - 204012
Alignment:
Q  77 cagttgcggagccataaattttatagagcctatgcgaaaaatttatcgtaaattcacatgtgacataatatataataatagtcataaatcaaaataaaag 176  Q
    |||| |||||| || |||||||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  204168 cagtggcggagtcagaaattttatagaacctgggcgaaaaatttatcgtaaattcacatgtgacataatatataataatagtcataaatcaaaataaaag 204069  T
Q  177 aggatcgcca-tttttctataatagtacagtttgaaatacgagagatgaaatataat 232  Q
    || |||| || |||||||| || |||||||||||||||| |||||||||||||||||    
T  204068 agaatcgtcattttttctacaaaagtacagtttgaaataagagagatgaaatataat 204012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 113 - 236
Target Start/End: Original strand, 23244464 - 23244587
Alignment:
Q  113 aaaaattta-tcgtaaattcacatgtgacataatatataataatagtcataaatcaaaataaaagaggatcgccatttttcta-taatagtacagtttga 210  Q
    ||||||||| ||| ||||| ||||| ||||||||||||||  |||| |||||||  |||||||||||| ||| |||||| | | ||| |||||| |||||    
T  23244464 aaaaatttaatcgcaaatttacatgcgacataatatataa--atagccataaattgaaataaaagaggctcgtcattttgccaataaaagtacaatttga 23244561  T
Q  211 aatacgagagatgaaatataatctgt 236  Q
    |||| |||||||||||||||||||||    
T  23244562 aataagagagatgaaatataatctgt 23244587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 77 - 150
Target Start/End: Complemental strand, 2985919 - 2985846
Alignment:
Q  77 cagttgcggagccataaattttatagagcctatgcgaaaaatttatcgtaaattcacatgtgacataatatata 150  Q
    |||| |||||||||  |||| ||||||||||  |||||||||||||||||||||||||||||| ||||||||||    
T  2985919 cagtggcggagccaggaattatatagagcctgggcgaaaaatttatcgtaaattcacatgtgaaataatatata 2985846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 126 - 231
Target Start/End: Complemental strand, 1280848 - 1280744
Alignment:
Q  126 aaattcacatgtgacataatatataataatagtcataaatcaaaataaaagaggatcgccatttt-tctataatagtacagtttgaaatacgagagatga 224  Q
    |||||||||||||||||||||||||  |||||||||||||| |||||||||||| |||  ||||| || | || |||||| ||| ||||| |||| ||||    
T  1280848 aaattcacatgtgacataatatata--aatagtcataaatcgaaataaaagaggctcgtaattttgtcaacaaaagtacaatttaaaataagagatatga 1280751  T
Q  225 aatataa 231  Q
    |||||||    
T  1280750 aatataa 1280744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 77 - 151
Target Start/End: Original strand, 26282281 - 26282355
Alignment:
Q  77 cagttgcggagccataaattttatagagcctatgcgaaaaatttatcgtaaattcacatgtgacataatatataa 151  Q
    |||| |||||||||  || ||||| ||||||  |||||||||| |||||||||||||||||||||||||||||||    
T  26282281 cagtggcggagccaggaaatttatggagcctgggcgaaaaattaatcgtaaattcacatgtgacataatatataa 26282355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 77 - 150
Target Start/End: Original strand, 4306673 - 4306746
Alignment:
Q  77 cagttgcggagccataaattttatagagcctatgcgaaaaatttatcgtaaattcacatgtgacataatatata 150  Q
    |||| |||||||||  ||||  |||||||||  ||||||||||||||| |||||||||||||||||||||||||    
T  4306673 cagtggcggagccaggaattacatagagcctgggcgaaaaatttatcgcaaattcacatgtgacataatatata 4306746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 77 - 150
Target Start/End: Original strand, 15497447 - 15497520
Alignment:
Q  77 cagttgcggagccataaattttatagagcctatgcgaaaaatttatcgtaaattcacatgtgacataatatata 150  Q
    |||| |||||||||  ||||  |||||||||  ||||||||||||||| |||||||||||||||||||||||||    
T  15497447 cagtggcggagccaggaattacatagagcctgggcgaaaaatttatcgcaaattcacatgtgacataatatata 15497520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 83 - 150
Target Start/End: Complemental strand, 14317196 - 14317129
Alignment:
Q  83 cggagccataaattttatagagcctatgcgaaaaatttatcgtaaattcacatgtgacataatatata 150  Q
    ||||||||  |||| ||||||||||   |||||||||||||| |||||||||||||||||||||||||    
T  14317196 cggagccaggaattatatagagcctggacgaaaaatttatcgcaaattcacatgtgacataatatata 14317129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 75 - 150
Target Start/End: Complemental strand, 15917519 - 15917444
Alignment:
Q  75 aacagttgcggagccataaattttatagagcctatgcgaaaaatttatcgtaaattcacatgtgacataatatata 150  Q
    |||||| |||||||||  ||||  |||||||||| ||||||||||||||| || || |||||||||||||||||||    
T  15917519 aacagtggcggagccagcaattacatagagcctaggcgaaaaatttatcgcaagtttacatgtgacataatatata 15917444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 126 - 231
Target Start/End: Original strand, 27168711 - 27168815
Alignment:
Q  126 aaattcacatgtgacataatatataataatagtcataaatcaaaataaaagaggatcgccatttt-tctataatagtacagtttgaaatacgagagatga 224  Q
    |||||||||| ||||||||||||||  |||||||||||||| |||||| ||||  ||| |||||| || |||| |||| | ||||||||| |||||||||    
T  27168711 aaattcacatttgacataatatata--aatagtcataaatcgaaataatagagactcgtcattttatccataaaagtataatttgaaataagagagatga 27168808  T
Q  225 aatataa 231  Q
    || ||||    
T  27168809 aacataa 27168815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 77 - 151
Target Start/End: Original strand, 36292573 - 36292647
Alignment:
Q  77 cagttgcggagccataaattttatagagcctatgcgaaaaatttatcgtaaattcacatgtgacataatatataa 151  Q
    |||| |||||||||  || ||||| |||||   |||||||||| |||||||||||||||||||||||||||||||    
T  36292573 cagtggcggagccaggaaatttatggagccggggcgaaaaattaatcgtaaattcacatgtgacataatatataa 36292647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 113 - 177
Target Start/End: Complemental strand, 192909 - 192847
Alignment:
Q  113 aaaaatttatcgtaaattcacatgtgacataatatataataatagtcataaatcaaaataaaaga 177  Q
    |||||||||||| |||||||||||| ||||||||||||  || | ||||||||||||||||||||    
T  192909 aaaaatttatcgcaaattcacatgtaacataatatata--aacaatcataaatcaaaataaaaga 192847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 113 - 172
Target Start/End: Complemental strand, 13819143 - 13819086
Alignment:
Q  113 aaaaatttatcgtaaattcacatgtgacataatatataataatagtcataaatcaaaata 172  Q
    ||||||| ||||||||||||||||||||||||||||||  || ||||||||||| |||||    
T  13819143 aaaaattaatcgtaaattcacatgtgacataatatata--aacagtcataaatcgaaata 13819086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 113 - 171
Target Start/End: Original strand, 1775367 - 1775423
Alignment:
Q  113 aaaaatttatcgtaaattcacatgtgacataatatataataatagtcataaatcaaaat 171  Q
    ||||||| ||||||||||||||||||||||||||||||  || ||||||||||| ||||    
T  1775367 aaaaattaatcgtaaattcacatgtgacataatatata--aacagtcataaatcgaaat 1775423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 113 - 151
Target Start/End: Complemental strand, 16156074 - 16156036
Alignment:
Q  113 aaaaatttatcgtaaattcacatgtgacataatatataa 151  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  16156074 aaaaattaatcgtaaattcacatgtgacataatatataa 16156036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 168
Target Start/End: Complemental strand, 39435879 - 39435826
Alignment:
Q  113 aaaaatttatcgtaaattcacatgtgacataatatataataatagtcataaatcaa 168  Q
    ||||||| ||||||||||||||||||| ||||||||||  || |||||||||||||    
T  39435879 aaaaattaatcgtaaattcacatgtgaaataatatata--aacagtcataaatcaa 39435826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 126 - 236
Target Start/End: Complemental strand, 8786046 - 8785940
Alignment:
Q  126 aaattcacatgtgacataatatataataatagtcataaatcaaaataaaagaggatcgccatttt-tctataatagtacagtttgaaatacgagagatga 224  Q
    ||||||||||| |||||||||||||||     |||||||| ||||||||||||| | | |||||| || |||| | |||| || |||||| |||||||||    
T  8786046 aaattcacatgggacataatatataat-----tcataaattaaaataaaagaggtttgtcattttgtcgataaaactacaattggaaataagagagatga 8785952  T
Q  225 aatataatctgt 236  Q
    || |||| ||||    
T  8785951 aacataacctgt 8785940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 113 - 179
Target Start/End: Complemental strand, 28802013 - 28801949
Alignment:
Q  113 aaaaatttatcgtaaattcacatgtgacataatatataataatagtcataaatcaaaataaaagagg 179  Q
    ||||||| |||| ||||||||||| |||||||||||||  || ||||||||||  ||||||||||||    
T  28802013 aaaaattaatcgcaaattcacatgcgacataatatata--aacagtcataaattgaaataaaagagg 28801949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 132 - 223
Target Start/End: Original strand, 22712814 - 22712903
Alignment:
Q  132 acatgtgacataatatataataatagtcataaatcaaaataaaagaggatcgccatttt-tctataatagtacagtttgaaatacgagagatg 223  Q
    ||||||||||| |||||||  |||||||||||||  |||| ||||||| ||| |||||| || |||| |||||| ||||||||| ||||||||    
T  22712814 acatgtgacatgatatata--aatagtcataaattgaaat-aaagaggctcgtcattttgtcgataaaagtacaatttgaaataagagagatg 22712903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 231
Target Start/End: Complemental strand, 3055754 - 3055645
Alignment:
Q  121 atcgtaaattcacatgtgacataatatataataatagtcataaatcaaaataaaagaggatcgccatttt-tctataatagtacagtttgaaatacgaga 219  Q
    |||| |||||||||||  | |||||||||||  ||||||||||||| |||||||||||  | | |||||| || |||| |||||| ||| ||||| ||||    
T  3055754 atcgcaaattcacatgctatataatatataa--atagtcataaatcgaaataaaagagacttgtcattttgtcgataaaagtacaatttaaaataagaga 3055657  T
Q  220 gatgaaatataa 231  Q
     |||||| ||||    
T  3055656 tatgaaacataa 3055645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 149
Target Start/End: Original strand, 31500711 - 31500747
Alignment:
Q  113 aaaaatttatcgtaaattcacatgtgacataatatat 149  Q
    |||||||||||| |||||||||||||||||| |||||    
T  31500711 aaaaatttatcgcaaattcacatgtgacatagtatat 31500747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 172
Target Start/End: Original strand, 39656519 - 39656576
Alignment:
Q  113 aaaaatttatcgtaaattcacatgtgacataatatataataatagtcataaatcaaaata 172  Q
    ||||||| ||| ||||||||||||||| ||||||||||  || ||||||||||| |||||    
T  39656519 aaaaattaatcttaaattcacatgtgatataatatata--aacagtcataaatcgaaata 39656576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 94; Significance: 6e-46; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 92 - 236
Target Start/End: Complemental strand, 24074715 - 24074570
Alignment:
Q  92 aaattttatagagcctatgcgaaaaatttatcgtaaattcacatgtgacataatatataataatagtcataaatcaaaataaaagaggatcgcca-tttt 190  Q
    |||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| || ||||    
T  24074715 aaattttatagagcccgggcgaaaaatttatcgtaaattcacatgtgacataatatataataatagtaataaatcaaaataaaagagggtcgtcattttt 24074616  T
Q  191 tctataatagtacagtttgaaatacgagagatgaaatataatctgt 236  Q
    |||| || |||||| ||| ||||| |||||||||||||||||||||    
T  24074615 tctacaaaagtacaatttaaaataagagagatgaaatataatctgt 24074570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 113 - 231
Target Start/End: Complemental strand, 1296790 - 1296672
Alignment:
Q  113 aaaaatttatcgtaaattcacatgtgacataatatataataatagtcataaatcaaaataaaagaggatcgccatttttctataatagtacagtttgaaa 212  Q
    |||||||||||| ||||||| |||||||||||||||||  ||||||||||||| |||||||||| || ||| ||||||   | || |||||| |||||||    
T  1296790 aaaaatttatcgcaaattcaaatgtgacataatatatataaatagtcataaattaaaataaaagtggttcgtcattttgtcacaaaagtacaatttgaaa 1296691  T
Q  213 tacgagagatgaaatataa 231  Q
    || || |||||||||||||    
T  1296690 taagatagatgaaatataa 1296672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 110 - 191
Target Start/End: Complemental strand, 3051148 - 3051063
Alignment:
Q  110 gcgaaaaatttatcgtaaattcacatgtgacataatatata-ata---atagtcataaatcaaaataaaagaggatcgccattttt 191  Q
    ||||||||||||||| ||||||||||||||||||||||||| |||   ||||| |||||||||||||||||||||||| |||||||    
T  3051148 gcgaaaaatttatcgcaaattcacatgtgacataatatatatatatatatagtaataaatcaaaataaaagaggatcgtcattttt 3051063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 121 - 226
Target Start/End: Complemental strand, 30621437 - 30621332
Alignment:
Q  121 atcgtaaattcacatgtgacataatatataataatagtcataaatcaaaat-aaaagaggatcgccatttt-tctataatagtacagtttgaaatacgag 218  Q
    |||| ||||||||||| ||||||||||||||  |||||||||||||||||| |||||||| ||| |||||| || |||| |||||| ||||||||| |||    
T  30621437 atcgcaaattcacatgcgacataatatataa--atagtcataaatcaaaataaaaagaggctcgtcattttgtcgataaaagtacaatttgaaataagag 30621340  T
Q  219 agatgaaa 226  Q
    ||||||||    
T  30621339 agatgaaa 30621332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 126 - 231
Target Start/End: Original strand, 32441882 - 32441986
Alignment:
Q  126 aaattcacatgtgacataatatataataatagtcataaatcaaaataaaagaggatcgccatttt-tctataatagtacagtttgaaatacgagagatga 224  Q
    ||||||||||| ||||||||||||||  ||||||||||||| |||||||||||| ||| |||||| || |||| |||||| ||||||||| ||||||| |    
T  32441882 aaattcacatgcgacataatatataa--atagtcataaatcgaaataaaagaggctcgtcattttgtcgataaaagtacaatttgaaataagagagataa 32441979  T
Q  225 aatataa 231  Q
    || ||||    
T  32441980 aacataa 32441986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 126 - 236
Target Start/End: Complemental strand, 11971226 - 11971117
Alignment:
Q  126 aaattcacatgtgacataatatataataatagtcataaatcaaaataaaagaggatcgccatttt-tctataatagtacagtttgaaatacgagagatga 224  Q
    |||||||||||||||||||||||||  |||||||||||||||| |||||||||| | | ||||||  | || | |||||| ||||||||| |||||||||    
T  11971226 aaattcacatgtgacataatatata--aatagtcataaatcaagataaaagaggtttgtcattttgacaattaaagtacaatttgaaataagagagatga 11971129  T
Q  225 aatataatctgt 236  Q
    || |||| ||||    
T  11971128 aacataacctgt 11971117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 126 - 231
Target Start/End: Complemental strand, 25599422 - 25599318
Alignment:
Q  126 aaattcacatgtgacataatatataataatagtcataaatcaaaataaaagaggatcgccatttt-tctataatagtacagtttgaaatacgagagatga 224  Q
    ||||||||||| ||||| ||||||||  ||||||||||||| |||||||| ||| ||| |||||| || |||| |||||| ||| ||||| |||||||||    
T  25599422 aaattcacatgcgacatgatatataa--atagtcataaatcgaaataaaataggctcgtcattttgtcgataaaagtacaattttaaataagagagatga 25599325  T
Q  225 aatataa 231  Q
    |||||||    
T  25599324 aatataa 25599318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 77 - 150
Target Start/End: Original strand, 26218297 - 26218370
Alignment:
Q  77 cagttgcggagccataaattttatagagcctatgcgaaaaatttatcgtaaattcacatgtgacataatatata 150  Q
    |||| ||||||||| ||||| ||||||||||  ||||||||||||| | |||||||||||||| ||||||||||    
T  26218297 cagtggcggagccagaaattatatagagcctgagcgaaaaatttattgcaaattcacatgtgatataatatata 26218370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 77 - 150
Target Start/End: Original strand, 34385004 - 34385077
Alignment:
Q  77 cagttgcggagccataaattttatagagcctatgcgaaaaatttatcgtaaattcacatgtgacataatatata 150  Q
    |||| ||||||||| |||||   ||||||||  ||||||||||||||| |||||||||||||||||||||||||    
T  34385004 cagtggcggagccagaaattacgtagagcctgggcgaaaaatttatcgcaaattcacatgtgacataatatata 34385077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 76 - 151
Target Start/End: Complemental strand, 399820 - 399745
Alignment:
Q  76 acagttgcggagccataaattttatagagcctatgcgaaaaatttatcgtaaattcacatgtgacataatatataa 151  Q
    ||||| |||||||||  || ||||| |||| |  |||||||||| ||||||||||||||||||| |||||||||||    
T  399820 acagtggcggagccaggaaatttatggagcttgggcgaaaaattaatcgtaaattcacatgtgatataatatataa 399745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 99 - 150
Target Start/End: Original strand, 21148918 - 21148969
Alignment:
Q  99 atagagcctatgcgaaaaatttatcgtaaattcacatgtgacataatatata 150  Q
    |||||||||  ||||||||||||||| ||||||| |||||||||||||||||    
T  21148918 atagagcctgggcgaaaaatttatcgcaaattcatatgtgacataatatata 21148969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 80 - 151
Target Start/End: Original strand, 34947796 - 34947867
Alignment:
Q  80 ttgcggagccataaattttatagagcctatgcgaaaaatttatcgtaaattcacatgtgacataatatataa 151  Q
    |||||||||||  || ||||| |||||   |||||||||| ||||||||||||||||||| |||||||||||    
T  34947796 ttgcggagccaggaaatttatggagcccgggcgaaaaattaatcgtaaattcacatgtgatataatatataa 34947867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 150
Target Start/End: Complemental strand, 13647690 - 13647614
Alignment:
Q  74 aaacagttgcggagccataaattttatagagcctatgcgaaaaatttatcgtaaattcacatgtgacataatatata 150  Q
    ||||||| |||||||||  ||||  |||||||||   |||||||||||| | |||||||||||||| ||||||||||    
T  13647690 aaacagtggcggagccaggaattacatagagcctggacgaaaaatttattgcaaattcacatgtgatataatatata 13647614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 113 - 175
Target Start/End: Original strand, 12180415 - 12180475
Alignment:
Q  113 aaaaatttatcgtaaattcacatgtgacataatatataataatagtcataaatcaaaataaaa 175  Q
    ||||||||| || | ||||||||| |||||||||||||  |||||||||||||| ||||||||    
T  12180415 aaaaatttaccgcagattcacatgcgacataatatata--aatagtcataaatcgaaataaaa 12180475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 151
Target Start/End: Complemental strand, 34253280 - 34253242
Alignment:
Q  113 aaaaatttatcgtaaattcacatgtgacataatatataa 151  Q
    ||||||| || ||||||||||||||||||||||||||||    
T  34253280 aaaaattaattgtaaattcacatgtgacataatatataa 34253242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 93 - 150
Target Start/End: Complemental strand, 2753886 - 2753829
Alignment:
Q  93 aattttatagagcctatgcgaaaaatttatcgtaaattcacatgtgacataatatata 150  Q
    |||| ||||||| ||  |||||||| |||| | |||||||||||||||||||||||||    
T  2753886 aattatatagagtctgggcgaaaaacttattgcaaattcacatgtgacataatatata 2753829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 135 - 179
Target Start/End: Original strand, 31028005 - 31028047
Alignment:
Q  135 tgtgacataatatataataatagtcataaatcaaaataaaagagg 179  Q
    |||||||||||||||||  ||||||||||||| ||||||||||||    
T  31028005 tgtgacataatatataa--atagtcataaatcgaaataaaagagg 31028047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 77 - 231
Target Start/End: Original strand, 134712 - 134866
Alignment:
Q  77 cagttgcggagccataaattttatagagcctatgcgaaaaatttatcgtaaattcacatgtgacataatatataataatagtcataaatcaaaataaaag 176  Q
    |||| ||||||||| ||| |||| |||| ||  ||||||||||||||| |||||||||||||||||||||||||  |||||||||| |||||||||||||    
T  134712 cagtggcggagccagaaaatttacagagtctg-gcgaaaaatttatcgcaaattcacatgtgacataatatatataaatagtcatatatcaaaataaaag 134810  T
Q  177 aggatcgcca-tttttctataatagtacagtttgaaatacgagagatgaaatataa 231  Q
    ||||||| || |||||||| || |||||||||||||||| ||||||||||||||||    
T  134811 aggatcgtcattttttctacaaaagtacagtttgaaataagagagatgaaatataa 134866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 81; Significance: 3e-38; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 110 - 236
Target Start/End: Original strand, 26493603 - 26493731
Alignment:
Q  110 gcgaaaaatttatcgtaaattcacatgtgacataatatataataatagtcataaatcaaaataaaagaggatcgcca-tttttctataatagtaca-gtt 207  Q
    |||||||||||||||||||||||||||||||||||||||||  |||||||||| |||||||||||||||||||| || |||||||| || |||||| |||    
T  26493603 gcgaaaaatttatcgtaaattcacatgtgacataatatatataaatagtcatatatcaaaataaaagaggatcgtcattttttctacaaaagtacaggtt 26493702  T
Q  208 tgaaatacgagagatgaaatataatctgt 236  Q
    ||||||| |||||||||||||||| ||||    
T  26493703 tgaaataagagagatgaaatataacctgt 26493731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 77 - 231
Target Start/End: Complemental strand, 19400298 - 19400141
Alignment:
Q  77 cagttgcggagccataaattttatagagcctatgcgaaaaatttatcgtaaattcacatgtgacataatatataataatagtcataaatcaaaataaaag 176  Q
    |||| ||||||||| ||||||||||||||||  || |||| ||||||| ||||||| |||||||||||||||||  ||||||||||||||||||||||||    
T  19400298 cagtggcggagccagaaattttatagagcctgggcaaaaagtttatcgcaaattcatatgtgacataatatatataaatagtcataaatcaaaataaaag 19400199  T
Q  177 aggatcgccatttttct---ataatagtacagtttgaaatacgagagatgaaatataa 231  Q
    ||| ||| ||||||| |   | || |||||| ||| ||||| || |||||||||||||    
T  19400198 aggttcgtcatttttttttaacaaaagtacaattttaaataagaaagatgaaatataa 19400141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 77 - 235
Target Start/End: Complemental strand, 10224209 - 10224050
Alignment:
Q  77 cagttgcggagccataaattttatagagcctatgcgaaaaatttatcgtaaattcacatgtgacataatatataataatagtcataaatcaaaataaaag 176  Q
    |||| ||||||||| |||||||| |||| ||   | ||||| |||||  ||||| |||||||| ||||||||||  |||||||||||||| |||||||||    
T  10224209 cagtggcggagccagaaattttacagagtctggacaaaaaaattatcaaaaattgacatgtgatataatatatataaatagtcataaatcgaaataaaag 10224110  T
Q  177 aggatcgccatttt-tctataatagtacagtttgaaatacgagagatgaaatataatctg 235  Q
    ||| ||  |||||| || |||| | |||| ||||||||| ||||||||||||||||||||    
T  10224109 aggttcttcattttgtcaataaaaatacaatttgaaataagagagatgaaatataatctg 10224050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 77 - 231
Target Start/End: Complemental strand, 45197957 - 45197806
Alignment:
Q  77 cagttgcggagccataaattttatagagcctatgcgaaaaatttatcgtaaattcacatgtgacataatatataataatagtcataaatcaaaataaaag 176  Q
    |||| ||||||||| ||||| |||||||  |  || |||||||||||| |||||||||||||||||||||||    ||| |||||||||| |||||||||    
T  45197957 cagtggcggagccagaaattctatagagtgtgggcaaaaaatttatcgcaaattcacatgtgacataatata----aatggtcataaatcgaaataaaag 45197862  T
Q  177 aggatcgcca-tttttctataatagtacagtttgaaatacgagagatgaaatataa 231  Q
    ||  ||| || |||||| | || |||||| ||||||||| ||||||||||||||||    
T  45197861 agattcgtcattttttcaacaaaagtacaatttgaaataagagagatgaaatataa 45197806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 126 - 219
Target Start/End: Complemental strand, 9230666 - 9230574
Alignment:
Q  126 aaattcacatgtgacataatatataataatagtcataaatcaaaataaaagaggatcgccatttt-tctataatagtacagtttgaaatacgaga 219  Q
    ||||||||||||||||||||||||||  |||||||||||||||||||||||||| ||| |||||| || |||| |||||| ||||||||| ||||    
T  9230666 aaattcacatgtgacataatatataa--atagtcataaatcaaaataaaagaggctcgtcattttgtcgataaaagtacaatttgaaataagaga 9230574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 75 - 236
Target Start/End: Original strand, 27387163 - 27387323
Alignment:
Q  75 aacagttgcggagccataaattttatagagcctatgcgaaaaatttatcgtaaattcacatgtgacataatatataataatagtcataaatcaaaataaa 174  Q
    |||||| ||||||||| |||||| |||||||||  || |||||||||||| || ||||  ||||||||||||||||  |||||||||||||| ||||| |    
T  27387163 aacagtggcggagccagaaatttcatagagcctgggcaaaaaatttatcgcaacttca--tgtgacataatatatataaatagtcataaatcgaaataga 27387260  T
Q  175 agaggatcgcca-tttttctataatagtacagtttgaaatacgagagatgaaatataatctgt 236  Q
    ||||| ||| || |||||| | || ||||||  || ||||| || ||||||||||||| ||||    
T  27387261 agaggttcgtcattttttcaacaaaagtacaacttaaaataagaaagatgaaatataacctgt 27387323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 126 - 226
Target Start/End: Complemental strand, 9557955 - 9557856
Alignment:
Q  126 aaattcacatgtgacataatatataataatagtcataaatcaaaataaaagaggatcgccatttt-tctataatagtacagtttgaaatacgagagatga 224  Q
    ||||| ||||||||||||||||||||  || ||||||||||||||||||| ||| ||| |||||| || |||| |||||| ||||||||| |||||||||    
T  9557955 aaatttacatgtgacataatatataa--attgtcataaatcaaaataaaaaaggttcgtcattttgtcgataagagtacaatttgaaataagagagatga 9557858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 83 - 190
Target Start/End: Complemental strand, 47730033 - 47729928
Alignment:
Q  83 cggagccataaattttatagagcctatgcgaaaaatttatcgtaaattcacatgtgacataatatataataatagtcataaatcaaaataaaagaggatc 182  Q
    ||||||||||||||||||||||  | ||| |||  || | |||||||||| |||||||||||||||||  |||| ||||||||| |||||||||||| ||    
T  47730033 cggagccataaattttatagagtttgtgcaaaattttgaccgtaaattcaaatgtgacataatatata--aataatcataaatcgaaataaaagaggctc 47729936  T
Q  183 gccatttt 190  Q
    | ||||||    
T  47729935 gtcatttt 47729928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 126 - 231
Target Start/End: Original strand, 26782219 - 26782326
Alignment:
Q  126 aaattcacatgtgacataatatataa-taatagtcataaatcaaaataaaagaggatcgccatttt-tctataatagtacagtttgaaatacgagagatg 223  Q
    ||||||||||| |||||||||||||| || ||||||||||||||||||||| ||| ||| |||||| || |||| |||||| ||| ||||| ||||| ||    
T  26782219 aaattcacatgcgacataatatataaatagtagtcataaatcaaaataaaataggctcgtcattttgtcgataaaagtacaatttaaaataagagagctg 26782318  T
Q  224 aaatataa 231  Q
    ||| ||||    
T  26782319 aaacataa 26782326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 77 - 166
Target Start/End: Original strand, 14775547 - 14775634
Alignment:
Q  77 cagttgcggagccataaattttatagagcctatgcgaaaaatttatcgtaaattcacatgtgacataatatataataatagtcataaatc 166  Q
    |||| |||||||||  || ||||| ||||||  |||||||||| ||||||||||||||| ||||||||||||||  ||||||||||||||    
T  14775547 cagtggcggagccaggaaatttatggagcctgggcgaaaaattaatcgtaaattcacatatgacataatatata--aatagtcataaatc 14775634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 77 - 166
Target Start/End: Original strand, 15226000 - 15226087
Alignment:
Q  77 cagttgcggagccataaattttatagagcctatgcgaaaaatttatcgtaaattcacatgtgacataatatataataatagtcataaatc 166  Q
    |||| |||||||||  || ||||| ||||||  |||||||||| ||||||||||||||| ||||||||||||||  ||||||||||||||    
T  15226000 cagtggcggagccaggaaatttatggagcctgggcgaaaaattaatcgtaaattcacatatgacataatatata--aatagtcataaatc 15226087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 126 - 231
Target Start/End: Complemental strand, 25024789 - 25024686
Alignment:
Q  126 aaattcacatgtgacataatatataataatagtcataaatcaaaataaaagaggatcgccatttttctataatagtacagtttgaaatacgagagatgaa 225  Q
    |||||||||| |||||||||||||||  ||| ||||||||||||||||||  || ||  ||||| || | || |||||| ||||||||| ||||||||||    
T  25024789 aaattcacatatgacataatatataa--ataatcataaatcaaaataaaaagggttcatcatttgtcaacaaaagtacaatttgaaataagagagatgaa 25024692  T
Q  226 atataa 231  Q
    ||||||    
T  25024691 atataa 25024686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 77 - 150
Target Start/End: Original strand, 22937701 - 22937774
Alignment:
Q  77 cagttgcggagccataaattttatagagcctatgcgaaaaatttatcgtaaattcacatgtgacataatatata 150  Q
    |||| |||||||||  ||||  |||||||||  ||||||||||||||| |||||||||||||||||||||||||    
T  22937701 cagtggcggagccaggaattacatagagcctgagcgaaaaatttatcgcaaattcacatgtgacataatatata 22937774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 68 - 231
Target Start/End: Complemental strand, 40703122 - 40702960
Alignment:
Q  68 gctcacaaacagttgcggagccataaattttatagagcctatgcgaaaaatttatcgtaaattcacatgtgacataatatataataatagtcataaatca 167  Q
    |||| ||| |||| ||||||||||||||||||| ||||||| || |||  || | |  ||||||||||||| || ||||||||  |||||||||||||||    
T  40703122 gctcccaaccagtggcggagccataaattttatcgagcctaggcaaaattttgacctcaaattcacatgtgccacaatatata--aatagtcataaatca 40703025  T
Q  168 aaataaaagaggatcgccatttt-tctataatagtacagtttgaaatacgagagatgaaatataa 231  Q
    |||||||| ||  | | |||||| |  |||| |||||| ||| ||||| ||||||||||| ||||    
T  40703024 aaataaaatagacttgtcattttgtagataaaagtacaatttaaaataagagagatgaaacataa 40702960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 126 - 179
Target Start/End: Original strand, 11019617 - 11019668
Alignment:
Q  126 aaattcacatgtgacataatatataataatagtcataaatcaaaataaaagagg 179  Q
    |||||||||||||||||||||||||  || ||||||||||||||||||||||||    
T  11019617 aaattcacatgtgacataatatata--aacagtcataaatcaaaataaaagagg 11019668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 77 - 150
Target Start/End: Original strand, 38826023 - 38826096
Alignment:
Q  77 cagttgcggagccataaattttatagagcctatgcgaaaaatttatcgtaaattcacatgtgacataatatata 150  Q
    |||| |||||||||  ||||  |||||| ||  ||||||||||||||| |||||||||||||||||||||||||    
T  38826023 cagtggcggagccaggaattacatagagtctgggcgaaaaatttatcgcaaattcacatgtgacataatatata 38826096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 153 - 236
Target Start/End: Original strand, 13715120 - 13715204
Alignment:
Q  153 aatagtcataaatcaaaataaaagaggatcgccatttt-tctataatagtacagtttgaaatacgagagatgaaatataatctgt 236  Q
    |||||||||||||  |||||||||||| ||| |||||| || |||| |||||| |||||||||  ||||||||| ||||||||||    
T  13715120 aatagtcataaattgaaataaaagaggctcgtcattttgtcaataaaagtacaatttgaaataaaagagatgaattataatctgt 13715204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 72 - 171
Target Start/End: Complemental strand, 36632035 - 36631938
Alignment:
Q  72 acaaacagttgcggagccataaattttatagagcctatgcgaaaaatttatcgtaaattcacatgtgacataatatataataatagtcataaatcaaaat 171  Q
    |||| |||| |||||||||  || ||||| |||||   || ||||||| ||||||||||||||||||||||||||||||  || ||||||||||| ||||    
T  36632035 acaatcagtggcggagccaggaaatttatggagcccgggcaaaaaattaatcgtaaattcacatgtgacataatatata--aacagtcataaatcgaaat 36631938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 113 - 171
Target Start/End: Complemental strand, 8395343 - 8395287
Alignment:
Q  113 aaaaatttatcgtaaattcacatgtgacataatatataataatagtcataaatcaaaat 171  Q
    ||||||| ||||||||||||||||||||||||||||||  || ||||||||||| ||||    
T  8395343 aaaaattaatcgtaaattcacatgtgacataatatata--aacagtcataaatcgaaat 8395287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 126 - 231
Target Start/End: Original strand, 25491542 - 25491646
Alignment:
Q  126 aaattcacatgtgacataatatataataatagtcataaatcaaaataaaagaggatcgccatttt-tctataatagtacagtttgaaatacgagagatga 224  Q
    ||||| |||||||||||||||||||  |||||||||||||  |||||||| ||  ||| |||||| || | || |||||| ||||||||| |||| ||||    
T  25491542 aaatttacatgtgacataatatata--aatagtcataaattgaaataaaatagactcgtcattttgtcaacaaaagtacaatttgaaataagagatatga 25491639  T
Q  225 aatataa 231  Q
    |||||||    
T  25491640 aatataa 25491646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 150
Target Start/End: Original strand, 37966173 - 37966212
Alignment:
Q  111 cgaaaaatttatcgtaaattcacatgtgacataatatata 150  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  37966173 cgaaaaatttatcgcaaattcacatgtgacataatatata 37966212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 130 - 234
Target Start/End: Complemental strand, 18375666 - 18375564
Alignment:
Q  130 tcacatgtgacataatatataataatagtcataaatcaaaataaaagaggatcgccatttt-tctataatagtacagtttgaaatacgagagatgaaata 228  Q
    |||||||||||||||||||||  |||||||||||||| |||  |||| || ||| |||||| || |||| |||||| ||||||||| |||| |||||| |    
T  18375666 tcacatgtgacataatatata--aatagtcataaatcgaaa-gaaagtggctcgtcattttatccataaaagtacaatttgaaataagagaaatgaaaca 18375570  T
Q  229 taatct 234  Q
    ||||||    
T  18375569 taatct 18375564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 151
Target Start/End: Original strand, 3113122 - 3113163
Alignment:
Q  110 gcgaaaaatttatcgtaaattcacatgtgacataatatataa 151  Q
    |||||||||| ||||||||||||||||||| |||||||||||    
T  3113122 gcgaaaaattaatcgtaaattcacatgtgatataatatataa 3113163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 132 - 231
Target Start/End: Complemental strand, 14089009 - 14088911
Alignment:
Q  132 acatgtgacataatatataataatagtcataaatcaaaataaaagaggatcgcca-tttttctataatagtacagtttgaaatacgagagatgaaatata 230  Q
    ||||||||||||||||| ||  |||||||||||||||||||||| ||| ||| || ||| || |  | |||||| ||||||||| |||| ||||||||||    
T  14089009 acatgtgacataatatacaa--atagtcataaatcaaaataaaataggctcgtcagtttgtcaaccaaagtacaatttgaaataagagatatgaaatata 14088912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 132 - 231
Target Start/End: Complemental strand, 14399027 - 14398929
Alignment:
Q  132 acatgtgacataatatataataatagtcataaatcaaaataaaagaggatcgcca-tttttctataatagtacagtttgaaatacgagagatgaaatata 230  Q
    ||||||||||||||||| ||  |||||||||||||||||||||| ||| ||| || ||| || |  | |||||| ||||||||| |||| ||||||||||    
T  14399027 acatgtgacataatatacaa--atagtcataaatcaaaataaaataggctcgtcagtttgtcaaccaaagtacaatttgaaataagagatatgaaatata 14398930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 113 - 179
Target Start/End: Original strand, 34468363 - 34468427
Alignment:
Q  113 aaaaatttatcgtaaattcacatgtgacataatatataataatagtcataaatcaaaataaaagagg 179  Q
    ||||||| ||| ||||||||||||||| ||||||||||  || ||||||||||  ||||||||||||    
T  34468363 aaaaattaatcctaaattcacatgtgatataatatata--aacagtcataaattgaaataaaagagg 34468427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 149
Target Start/End: Complemental strand, 36659337 - 36659301
Alignment:
Q  113 aaaaatttatcgtaaattcacatgtgacataatatat 149  Q
    |||| ||||||| ||||||||||||||||||||||||    
T  36659337 aaaattttatcgaaaattcacatgtgacataatatat 36659301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 4e-25; HSPs: 46)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 77 - 214
Target Start/End: Complemental strand, 6255484 - 6255346
Alignment:
Q  77 cagttgcggagccataaattttatagagcctatgcgaaaaatttatcgtaaattcacatgtgacataatatataataatagtcataaatcaaaataaaag 176  Q
    |||| ||||||||| ||||| |||||||  |  ||||||||||||||||||||||| | |||||||||||||||  |||||| ||||||||| |||||||    
T  6255484 cagtggcggagccagaaattatatagagtttgggcgaaaaatttatcgtaaattcatacgtgacataatatatataaatagtaataaatcaagataaaag 6255385  T
Q  177 aggatcgcca-tttttctataatagtacagtttgaaata 214  Q
    || |||  || |||||||| || ||||||||||||||||    
T  6255384 agaatcatcattttttctacaaaagtacagtttgaaata 6255346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 82 - 231
Target Start/End: Complemental strand, 42844023 - 42843873
Alignment:
Q  82 gcggagccataaattttatagagcctatgcgaaaaatttatcgtaaattcacatgtgacataatatataataatagtcataaatcaaaataaaagaggat 181  Q
    |||||||||  |||| ||||||||||  |||||||||||||||  |||||||||||||| |||||||||  |||||||||||||| |||||||||||| |    
T  42844023 gcggagccaggaattctatagagcctgggcgaaaaatttatcgccaattcacatgtgacgtaatatatataaatagtcataaatcgaaataaaagaggtt 42843924  T
Q  182 cgcca-tttttctataatagtacagtttgaaatacgagagatgaaatataa 231  Q
    || || |||||| | || |||||| ||| ||| | | ||||||||||||||    
T  42843923 cgtcattttttcaacaaaagtacaatttaaaacaagtgagatgaaatataa 42843873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 77 - 231
Target Start/End: Original strand, 12211085 - 12211238
Alignment:
Q  77 cagttgcggagccataaattttatagagcctatgcgaaaaatttatcgtaaattcacatgtgacataatatataataatagtcataaatcaaaataaaag 176  Q
    |||| |||||||||| ||||||| ||||  |  || |||||||||||| |||||||||||||||||||||||||  |||| ||||||||| ||||||||     
T  12211085 cagtggcggagccatgaattttacagagtttgggcaaaaaatttatcgcaaattcacatgtgacataatatata--aataatcataaatcgaaataaaaa 12211182  T
Q  177 aggatcgccatttt-tctataatagtacagtttgaaatacgagagatgaaatataa 231  Q
    ||  ||| |||||| || | || |||||| ||||| ||| ||||||||||||||||    
T  12211183 agattcgtcattttatcaacaaaagtacaatttgagataagagagatgaaatataa 12211238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 126 - 231
Target Start/End: Original strand, 53692942 - 53693046
Alignment:
Q  126 aaattcacatgtgacataatatataataatagtcataaatcaaaataaaagaggatcgccatttt-tctataatagtacagtttgaaatacgagagatga 224  Q
    ||||||||||| ||||||||||||||  ||||||||||||| |||||||||||| ||| |||||| || |||| |||||| ||||||||| |||||||||    
T  53692942 aaattcacatgcgacataatatataa--atagtcataaatcgaaataaaagaggctcgtcattttgtcgataaaagtacaatttgaaataagagagatga 53693039  T
Q  225 aatataa 231  Q
    || ||||    
T  53693040 aacataa 53693046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 82 - 231
Target Start/End: Original strand, 55464522 - 55464672
Alignment:
Q  82 gcggagccataaattttatagagcctatgcgaaaaatttatcgtaaattcacatgtgacataatatataataatagtcataaatcaaaataaaagaggat 181  Q
    |||||||||| ||||||||| |||||  || || ||||||||| | ||||| |||||||||||||||||  ||| ||| |||||| |||||||||||| |    
T  55464522 gcggagccatgaattttatatagcctgagcaaacaatttatcgcatattcatatgtgacataatatatataaattgtcgtaaatcgaaataaaagaggtt 55464621  T
Q  182 cgcca-tttttctataatagtacagtttgaaatacgagagatgaaatataa 231  Q
    || || |||||| | || |||| | ||||||||| || |||||||||||||    
T  55464622 cgtcattttttcaacaaaagtataatttgaaataagaaagatgaaatataa 55464672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 77 - 178
Target Start/End: Original strand, 31002586 - 31002685
Alignment:
Q  77 cagttgcggagccataaattttatagagcctatgcgaaaaatttatcgtaaattcacatgtgacataatatataataatagtcataaatcaaaataaaag 176  Q
    |||| ||||||||||||||||| ||||||||  || |||  || | || |||||||||||||||||||||||||  |||||||||||||||||||| |||    
T  31002586 cagtggcggagccataaattttgtagagcctgggcaaaattttgaccgcaaattcacatgtgacataatatata--aatagtcataaatcaaaatacaag 31002683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 76 - 150
Target Start/End: Original strand, 37236116 - 37236190
Alignment:
Q  76 acagttgcggagccataaattttatagagcctatgcgaaaaatttatcgtaaattcacatgtgacataatatata 150  Q
    ||||| ||||||||| |||||  |||||||||  ||||||||||||||| |||||||||||||||||||||||||    
T  37236116 acagtggcggagccagaaattacatagagcctgggcgaaaaatttatcgcaaattcacatgtgacataatatata 37236190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 126 - 231
Target Start/End: Complemental strand, 1147766 - 1147662
Alignment:
Q  126 aaattcacatgtgacataatatataataatagtcataaatcaaaataaaagaggatcgccatttt-tctataatagtacagtttgaaatacgagagatga 224  Q
    |||||||||||  |||||||||||||  ||||| |||||||||||||||||||| ||| |||||| || |||| | |||| ||||||||| |||||||||    
T  1147766 aaattcacatgctacataatatataa--atagttataaatcaaaataaaagaggctcggcattttgtcgataaaaatacaatttgaaataagagagatga 1147669  T
Q  225 aatataa 231  Q
    || ||||    
T  1147668 aacataa 1147662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 72 - 151
Target Start/End: Complemental strand, 43357116 - 43357037
Alignment:
Q  72 acaaacagttgcggagccataaattttatagagcctatgcgaaaaatttatcgtaaattcacatgtgacataatatataa 151  Q
    |||| |||| |||||||||  || ||||| ||||||  |||||||||| |||||||||||||||||||||||||||||||    
T  43357116 acaagcagtggcggagccaggaaatttatggagcctgggcgaaaaattaatcgtaaattcacatgtgacataatatataa 43357037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 77 - 151
Target Start/End: Complemental strand, 20130445 - 20130371
Alignment:
Q  77 cagttgcggagccataaattttatagagcctatgcgaaaaatttatcgtaaattcacatgtgacataatatataa 151  Q
    |||| |||||||||  || ||||| ||||||  |||||||||| |||||||||||||||||||||||||||||||    
T  20130445 cagtggcggagccaggaaatttatggagcctgggcgaaaaattaatcgtaaattcacatgtgacataatatataa 20130371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 77 - 151
Target Start/End: Original strand, 34406245 - 34406319
Alignment:
Q  77 cagttgcggagccataaattttatagagcctatgcgaaaaatttatcgtaaattcacatgtgacataatatataa 151  Q
    |||| |||||||||  || ||||| ||||||  |||||||||| |||||||||||||||||||||||||||||||    
T  34406245 cagtggcggagccaggaaatttatggagcctgggcgaaaaattaatcgtaaattcacatgtgacataatatataa 34406319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 126 - 236
Target Start/End: Complemental strand, 4325678 - 4325569
Alignment:
Q  126 aaattcacatgtgacataatatataataatagtcataaatcaaaataaaagaggatcgccatttt-tctataatagtacagtttgaaatacgagagatga 224  Q
    ||||| |||||||| |||||||||||  ||||||||||||  |||||||||||| ||| |||||| || |||| |||||| ||||||||| ||||||||     
T  4325678 aaatttacatgtgatataatatataa--atagtcataaatttaaataaaagaggctcgtcattttgtcgataaaagtacaatttgaaataagagagatgc 4325581  T
Q  225 aatataatctgt 236  Q
    || |||| ||||    
T  4325580 aacataacctgt 4325569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 156 - 231
Target Start/End: Original strand, 8897862 - 8897938
Alignment:
Q  156 agtcataaatcaaaataaaagaggatcgccatttt-tctataatagtacagtttgaaatacgagagatgaaatataa 231  Q
    |||||||||||||||||||||||| ||| |||||| || | || |||||| ||||||||| ||||||||||||||||    
T  8897862 agtcataaatcaaaataaaagaggttcgtcattttgtcaacaaaagtacaatttgaaataagagagatgaaatataa 8897938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 99 - 150
Target Start/End: Original strand, 5516955 - 5517006
Alignment:
Q  99 atagagcctatgcgaaaaatttatcgtaaattcacatgtgacataatatata 150  Q
    |||||||||  ||||||||||||||| |||||||||||||||||||||||||    
T  5516955 atagagcctgggcgaaaaatttatcgcaaattcacatgtgacataatatata 5517006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 99 - 150
Target Start/End: Original strand, 6211552 - 6211603
Alignment:
Q  99 atagagcctatgcgaaaaatttatcgtaaattcacatgtgacataatatata 150  Q
    |||||||||  ||||||||||||||| |||||||||||||||||||||||||    
T  6211552 atagagcctgagcgaaaaatttatcgcaaattcacatgtgacataatatata 6211603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 76 - 151
Target Start/End: Complemental strand, 13013396 - 13013321
Alignment:
Q  76 acagttgcggagccataaattttatagagcctatgcgaaaaatttatcgtaaattcacatgtgacataatatataa 151  Q
    ||||| |||||||||  || ||||| ||||||  |||||||||| ||||||||||||||||||| |||||||||||    
T  13013396 acagtggcggagccaggaaatttatggagcctgggcgaaaaattaatcgtaaattcacatgtgatataatatataa 13013321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 76 - 231
Target Start/End: Original strand, 25182733 - 25182891
Alignment:
Q  76 acagttgcggagccataaattttatagagcctatgcgaaaaatttatcgtaaattcacatgtgacataatat----ataataatagtcataaatcaaaat 171  Q
    ||||| || ||||||  |||||||||||||||| || ||||| |||||| ||||||||||||||||||||||    |||  ||||||||||||| ||| |    
T  25182733 acagtagcagagccaggaattttatagagcctaggcaaaaaaattatcgcaaattcacatgtgacataatatgtatatataaatagtcataaatgaaa-t 25182831  T
Q  172 aaaagaggatcgccatttt-tctataatagtacagtttgaaatacgagagatgaaatataa 231  Q
    |||| ||| ||| |||||| || | || || ||| ||| ||||| ||||||||||||||||    
T  25182832 aaaa-aggttcgtcattttgtcaacaaaagcacaatttaaaataagagagatgaaatataa 25182891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 99 - 150
Target Start/End: Original strand, 49908238 - 49908289
Alignment:
Q  99 atagagcctatgcgaaaaatttatcgtaaattcacatgtgacataatatata 150  Q
    |||||||||  ||||||||||||||| |||||||||||||||||||||||||    
T  49908238 atagagcctgggcgaaaaatttatcgcaaattcacatgtgacataatatata 49908289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 77 - 151
Target Start/End: Original strand, 26438240 - 26438314
Alignment:
Q  77 cagttgcggagccataaattttatagagcctatgcgaaaaatttatcgtaaattcacatgtgacataatatataa 151  Q
    |||| |||||||||  || ||||| ||||||  || ||||||| |||||||||||||||||||||||||||||||    
T  26438240 cagtggcggagccaggaaatttatggagcctgggcaaaaaattaatcgtaaattcacatgtgacataatatataa 26438314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 77 - 151
Target Start/End: Original strand, 29319321 - 29319395
Alignment:
Q  77 cagttgcggagccataaattttatagagcctatgcgaaaaatttatcgtaaattcacatgtgacataatatataa 151  Q
    ||||||||||||||  || ||||| |||||   |||||||||| ||||||||||||||||||| |||||||||||    
T  29319321 cagttgcggagccaggaaatttatggagcccgggcgaaaaattaatcgtaaattcacatgtgatataatatataa 29319395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 77 - 151
Target Start/End: Complemental strand, 47501979 - 47501905
Alignment:
Q  77 cagttgcggagccataaattttatagagcctatgcgaaaaatttatcgtaaattcacatgtgacataatatataa 151  Q
    |||| |||||||||  || ||||| ||||||  |||||||||| ||||||||||||||||||| |||||||||||    
T  47501979 cagtggcggagccaggaaatttatggagcctgggcgaaaaattaatcgtaaattcacatgtgatataatatataa 47501905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 93 - 150
Target Start/End: Original strand, 3239639 - 3239696
Alignment:
Q  93 aattttatagagcctatgcgaaaaatttatcgtaaattcacatgtgacataatatata 150  Q
    |||||||||||||||   | |||||||||| |||||||||||||||||||||||||||    
T  3239639 aattttatagagcctgcacaaaaaatttattgtaaattcacatgtgacataatatata 3239696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 113 - 172
Target Start/End: Original strand, 13390447 - 13390504
Alignment:
Q  113 aaaaatttatcgtaaattcacatgtgacataatatataataatagtcataaatcaaaata 172  Q
    ||||||| |||||||||||||||||||||||||||||   || |||||||||||||||||    
T  13390447 aaaaattaatcgtaaattcacatgtgacataatatat--caacagtcataaatcaaaata 13390504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 113 - 149
Target Start/End: Original strand, 13398556 - 13398592
Alignment:
Q  113 aaaaatttatcgtaaattcacatgtgacataatatat 149  Q
    |||||||||||||||||||||||||||||||||||||    
T  13398556 aaaaatttatcgtaaattcacatgtgacataatatat 13398592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 113 - 168
Target Start/End: Original strand, 17510245 - 17510298
Alignment:
Q  113 aaaaatttatcgtaaattcacatgtgacataatatataataatagtcataaatcaa 168  Q
    ||||||| ||||||||||||||||||||||||||||||  || |||||||||||||    
T  17510245 aaaaattaatcgtaaattcacatgtgacataatatata--aacagtcataaatcaa 17510298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 76 - 171
Target Start/End: Complemental strand, 40530290 - 40530197
Alignment:
Q  76 acagttgcggagccataaattttatagagcctatgcgaaaaatttatcgtaaattcacatgtgacataatatataataatagtcataaatcaaaat 171  Q
    ||||| |||||||||  || ||||| |||||   || ||||||| ||||||||||||||||||||||||||||||  || ||||||||||| ||||    
T  40530290 acagtggcggagccaggaaatttatggagccctagcaaaaaattaatcgtaaattcacatgtgacataatatata--aacagtcataaatcgaaat 40530197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 95 - 150
Target Start/End: Complemental strand, 20116782 - 20116727
Alignment:
Q  95 ttttatagagcctatgcgaaaaatttatcgtaaattcacatgtgacataatatata 150  Q
    ||||||||||| |  |||||||| |||||| |||||||||||||||||||||||||    
T  20116782 ttttatagagcttgagcgaaaaaattatcgcaaattcacatgtgacataatatata 20116727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 113 - 171
Target Start/End: Complemental strand, 25931921 - 25931865
Alignment:
Q  113 aaaaatttatcgtaaattcacatgtgacataatatataataatagtcataaatcaaaat 171  Q
    ||||||| ||||||||||||||||||||||||||||||  || ||||||||||| ||||    
T  25931921 aaaaattaatcgtaaattcacatgtgacataatatata--aacagtcataaatcgaaat 25931865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 112 - 150
Target Start/End: Original strand, 12679746 - 12679784
Alignment:
Q  112 gaaaaatttatcgtaaattcacatgtgacataatatata 150  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  12679746 gaaaaatttatcgcaaattcacatgtgacataatatata 12679784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 126 - 179
Target Start/End: Complemental strand, 17359399 - 17359348
Alignment:
Q  126 aaattcacatgtgacataatatataataatagtcataaatcaaaataaaagagg 179  Q
    |||||||||||||||||||||||||  |||| ||||||||| ||||||||||||    
T  17359399 aaattcacatgtgacataatatata--aataatcataaatcgaaataaaagagg 17359348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 77 - 139
Target Start/End: Complemental strand, 17555512 - 17555450
Alignment:
Q  77 cagttgcggagccataaattttatagagcctatgcgaaaaatttatcgtaaattcacatgtga 139  Q
    |||| ||||||||| |||||  |||||||||  ||||||||||||||| ||||||||||||||    
T  17555512 cagtggcggagccagaaattacatagagcctgagcgaaaaatttatcgcaaattcacatgtga 17555450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 124 - 236
Target Start/End: Original strand, 21753535 - 21753646
Alignment:
Q  124 gtaaattcacatgtgacataatatataataatagtcataaatcaaaataaaagaggatcgccatttt-tctataatagtacagtttgaaatacgagagat 222  Q
    |||||||||||| ||||||||||||||  |||| | ||||||| |||||||| ||| ||| |||||| || |||| |||||| ||| ||| | |||||||    
T  21753535 gtaaattcacatatgacataatatata--aataattataaatcgaaataaaataggctcgtcattttgtcaataaaagtacaatttaaaacaagagagat 21753632  T
Q  223 gaaatataatctgt 236  Q
    |||| |||| ||||    
T  21753633 gaaacataacctgt 21753646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 124 - 231
Target Start/End: Complemental strand, 3074638 - 3074532
Alignment:
Q  124 gtaaattcacatgtgacataatatataataatagtcataaatcaaaataaaagaggatcgccatttt-tctataatagtacagtttgaaatacgagagat 222  Q
    ||||||||||||  |||||||||||||  |||||||||||||| ||||||| |||  | | |||||| || |||| |||||| |||||||||  ||||||    
T  3074638 gtaaattcacatacgacataatatata--aatagtcataaatcgaaataaatgagacttgtcattttgtcgataaaagtacaatttgaaataaaagagat 3074541  T
Q  223 gaaatataa 231  Q
    |||| ||||    
T  3074540 gaaacataa 3074532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 128
Target Start/End: Original strand, 11826931 - 11826987
Alignment:
Q  72 acaaacagttgcggagccataaattttatagagcctatgcgaaaaatttatcgtaaa 128  Q
    ||||||||| ||| ||||| ||||||||||||||||| || ||||| ||||||||||    
T  11826931 acaaacagtggcgaagccagaaattttatagagcctaggcaaaaaaattatcgtaaa 11826987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 172
Target Start/End: Original strand, 33135432 - 33135489
Alignment:
Q  113 aaaaatttatcgtaaattcacatgtgacataatatataataatagtcataaatcaaaata 172  Q
    |||||||||||  ||||||||||||||||||||||||   || |||||||||||||||||    
T  33135432 aaaaatttatcacaaattcacatgtgacataatatat--caacagtcataaatcaaaata 33135489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 172
Target Start/End: Original strand, 36381338 - 36381395
Alignment:
Q  113 aaaaatttatcgtaaattcacatgtgacataatatataataatagtcataaatcaaaata 172  Q
    ||||||| || |||||||||||||||||||||||||||  || ||||||||||| |||||    
T  36381338 aaaaattaattgtaaattcacatgtgacataatatata--aacagtcataaatcgaaata 36381395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 149
Target Start/End: Complemental strand, 44157801 - 44157765
Alignment:
Q  113 aaaaatttatcgtaaattcacatgtgacataatatat 149  Q
    |||||||||||| ||||||||||||||||||||||||    
T  44157801 aaaaatttatcgcaaattcacatgtgacataatatat 44157765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 114 - 172
Target Start/End: Complemental strand, 6236635 - 6236579
Alignment:
Q  114 aaaatttatcgtaaattcacatgtgacataatatataataatagtcataaatcaaaata 172  Q
    |||||| |||||||||||| |||||||||||||||||  || ||||||||||| |||||    
T  6236635 aaaattaatcgtaaattcatatgtgacataatatata--aacagtcataaatcgaaata 6236579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 113 - 175
Target Start/End: Complemental strand, 30111099 - 30111039
Alignment:
Q  113 aaaaatttatcgtaaattcacatgtgacataatatataataatagtcataaatcaaaataaaa 175  Q
    ||||| ||||||||||||||||  | | |||||||||||  ||||||||||||||||||||||    
T  30111099 aaaaaattatcgtaaattcacacataatataatatataa--atagtcataaatcaaaataaaa 30111039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 130 - 231
Target Start/End: Complemental strand, 31944879 - 31944779
Alignment:
Q  130 tcacatgtgacataatatataataatagtcataaatcaaaataaaagaggatcgccatttt-tctataatagtacagtttgaaatacgagagatgaaata 228  Q
    ||||||| ||||||||||||||  ||| ||| ||||  |||||||||||  ||| |||||| || |||| |||||| ||||||||| ||||||||||| |    
T  31944879 tcacatgcgacataatatataa--ataatcaaaaattgaaataaaagagactcgtcattttgtcgataaaagtacaatttgaaataagagagatgaaaca 31944782  T
Q  229 taa 231  Q
    |||    
T  31944781 taa 31944779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 151
Target Start/End: Complemental strand, 26449860 - 26449822
Alignment:
Q  113 aaaaatttatcgtaaattcacatgtgacataatatataa 151  Q
    |||||||||||| |||||||||||||| |||||||||||    
T  26449860 aaaaatttatcgcaaattcacatgtgagataatatataa 26449822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 150
Target Start/End: Original strand, 34770374 - 34770412
Alignment:
Q  112 gaaaaatttatcgtaaattcacatgtgacataatatata 150  Q
    ||||||||||||||||||| ||| |||||||||||||||    
T  34770374 gaaaaatttatcgtaaatttacacgtgacataatatata 34770412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 151
Target Start/End: Complemental strand, 37577935 - 37577897
Alignment:
Q  113 aaaaatttatcgtaaattcacatgtgacataatatataa 151  Q
    |||||||||||| |||||||||| |||||||||||||||    
T  37577935 aaaaatttatcgcaaattcacatatgacataatatataa 37577897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 113 - 150
Target Start/End: Original strand, 50719967 - 50720004
Alignment:
Q  113 aaaaatttatcgtaaattcacatgtgacataatatata 150  Q
    |||||||||| | |||||||||||||||||||||||||    
T  50719967 aaaaatttattgcaaattcacatgtgacataatatata 50720004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 168
Target Start/End: Original strand, 29994996 - 29995049
Alignment:
Q  113 aaaaatttatcgtaaattcacatgtgacataatatataataatagtcataaatcaa 168  Q
    ||||||| |||||||||| | |||||||||||||||||  || |||||||||||||    
T  29994996 aaaaattgatcgtaaatttatatgtgacataatatata--aacagtcataaatcaa 29995049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 149
Target Start/End: Original strand, 50204082 - 50204118
Alignment:
Q  113 aaaaatttatcgtaaattcacatgtgacataatatat 149  Q
    |||||||||||| ||||| ||||||||||||||||||    
T  50204082 aaaaatttatcgcaaatttacatgtgacataatatat 50204118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 83 - 231
Target Start/End: Original strand, 51408472 - 51408621
Alignment:
Q  83 cggagccataaattttatagagcctatgcgaaaaatttatcgtaaattcacatgtgacataatatataataatagtcataaatcaaaataaaagaggatc 182  Q
    |||||||| ||||||||||||  ||  || |||| ||||||| ||||||| |||||||||||||||||  ||||||||||||||||||||||| | | ||    
T  51408472 cggagccagaaattttatagaatctgggcaaaaagtttatcgcaaattcatatgtgacataatatatataaatagtcataaatcaaaataaaaaaagttc 51408571  T
Q  183 gcca-tttttctataatagtacagtttgaaatacgagagatgaaatataa 231  Q
    | || |||||| | || |||||| ||||||||| || |||||||||||||    
T  51408572 gtcattttttcaacaaaagtacaatttgaaataagaaagatgaaatataa 51408621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 126 - 235
Target Start/End: Original strand, 24988721 - 24988829
Alignment:
Q  126 aaattcacatgtgacataatatataataatagtcataaatcaaaataaaagaggatcgccatttt-tctataatagtacagtttgaaatacgagagatga 224  Q
    |||||||||||||||||||| |||||  ||| |||||||||||||||||||||  ||| |||||| || |||| |||||| ||||||||| |||||||||    
T  24988721 aaattcacatgtgacataatttataa--ataatcataaatcaaaataaaagagactcgtcattttgtcaataaaagtacaatttgaaataagagagatga 24988818  T
Q  225 aatataatctg 235  Q
    || ||||||||    
T  24988819 aacataatctg 24988829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 72 - 150
Target Start/End: Complemental strand, 6891567 - 6891489
Alignment:
Q  72 acaaacagttgcggagccataaattttatagagcctatgcgaaaaatttatcgtaaattcacatgtgacataatatata 150  Q
    ||||||||| |||||||||  ||||  |||||||||  ||||||||||||||| |||||||||||||||||||||||||    
T  6891567 acaaacagtggcggagccaggaattacatagagcctgggcgaaaaatttatcgcaaattcacatgtgacataatatata 6891489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 77 - 236
Target Start/End: Complemental strand, 31989345 - 31989187
Alignment:
Q  77 cagttgcggagccataaattttatagagcctatgcgaaaaatttatcgtaaattcacatgtgacataatatataataatagtcataaatcaaaataaaag 176  Q
    |||| ||| ||||| |||||| |||||||||  || |||||||||||| || ||||  ||||||||||||||||  |||| ||||||||| |||||||||    
T  31989345 cagtggcgaagccagaaatttcatagagcctgggcaaaaaatttatcgcaacttca--tgtgacataatatatataaataatcataaatcgaaataaaag 31989248  T
Q  177 aggatcgcca-tttttctataatagtacagtttgaaatacgagagatgaaatataatctgt 236  Q
    ||| ||| || |||||| | || ||||||  || ||||| || ||||||||||||| ||||    
T  31989247 aggttcgtcactttttcaacaaaagtacaacttaaaataagaaagatgaaatataacctgt 31989187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 113 - 179
Target Start/End: Original strand, 1185537 - 1185602
Alignment:
Q  113 aaaaatttatcgtaaatt-cacatgtgacataatatataataatagtcataaatcaaaataaaagagg 179  Q
    |||||||||||||||||| |||||||||||||||||||||  | ||||||||||||||||||||||||    
T  1185537 aaaaatttatcgtaaatttcacatgtgacataatatataa--acagtcataaatcaaaataaaagagg 1185602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 118 - 231
Target Start/End: Complemental strand, 50091542 - 50091430
Alignment:
Q  118 tttatcgtaaattcacatgtgacataatatataataatagtcataaatcaaaataaaagaggatcgccatttttct-ataatagtacagtttgaaatacg 216  Q
    ||||||| |||||||| || ||||||||||||||  |||||||||||||||||||||||||| ||| |||||| || |||| ||||||  ||| |||| |    
T  50091542 tttatcgcaaattcacttgcgacataatatataa--atagtcataaatcaaaataaaagaggttcgtcattttgctaataaaagtacaacttggaataag 50091445  T
Q  217 agagatgaaatataa 231  Q
    | |||||||| ||||    
T  50091444 atagatgaaacataa 50091430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 123 - 226
Target Start/End: Complemental strand, 15668215 - 15668113
Alignment:
Q  123 cgtaaattcacatgtgacataatatataataatagtcataaatcaaaataaaagaggatcgccatttt-tctataatagtacagtttgaaatacgagaga 221  Q
    ||||||||||||||||||||||||||||  |||||||||| | |||||||||||||| |||  ||||| || |||| | |||| ||| ||||| ||||||    
T  15668215 cgtaaattcacatgtgacataatatata--aatagtcatatagcaaaataaaagaggctcgttattttgtcaataaaattacaatttaaaataagagaga 15668118  T
Q  222 tgaaa 226  Q
    |||||    
T  15668117 tgaaa 15668113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 77 - 150
Target Start/End: Original strand, 19269162 - 19269235
Alignment:
Q  77 cagttgcggagccataaattttatagagcctatgcgaaaaatttatcgtaaattcacatgtgacataatatata 150  Q
    |||| |||||||||  ||||  |||||||||  ||||||||||||||| |||||||||||||||||||||||||    
T  19269162 cagtggcggagccaggaattacatagagcctgggcgaaaaatttatcgcaaattcacatgtgacataatatata 19269235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 77 - 150
Target Start/End: Original strand, 48757334 - 48757407
Alignment:
Q  77 cagttgcggagccataaattttatagagcctatgcgaaaaatttatcgtaaattcacatgtgacataatatata 150  Q
    |||| |||||||||  ||||  |||||||||  ||||||||||||||| |||||||||||||||||||||||||    
T  48757334 cagtggcggagccaggaattacatagagcctgggcgaaaaatttatcgcaaattcacatgtgacataatatata 48757407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 113 - 175
Target Start/End: Original strand, 34083111 - 34083171
Alignment:
Q  113 aaaaatttatcgtaaattcacatgtgacataatatataataatagtcataaatcaaaataaaa 175  Q
    ||||||| ||||||||||||||||||||||||||||||  || ||||||||||||||| ||||    
T  34083111 aaaaattaatcgtaaattcacatgtgacataatatata--aacagtcataaatcaaaaaaaaa 34083171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 96 - 151
Target Start/End: Complemental strand, 39772976 - 39772921
Alignment:
Q  96 tttatagagcctatgcgaaaaatttatcgtaaattcacatgtgacataatatataa 151  Q
    ||||| ||||||  |||||||||| |||||||||||||||||||||||||||||||    
T  39772976 tttatggagcctgggcgaaaaattaatcgtaaattcacatgtgacataatatataa 39772921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 126 - 235
Target Start/End: Complemental strand, 43137393 - 43137285
Alignment:
Q  126 aaattcacatgtgacataatatataataatagtcataaatcaaaataaaagaggatcgcca-tttttctataatagtacagtttgaaatacgagagatga 224  Q
    ||||||||||||||||||||||||   |||||||||||||| |||||||||||| | | || |||||| | || | |||| ||| ||||| |||| ||||    
T  43137393 aaattcacatgtgacataatatat--gaatagtcataaatcgaaataaaagaggtttgtcattttttcaacaaaaatacaatttaaaataagagatatga 43137296  T
Q  225 aatataatctg 235  Q
    |||||||||||    
T  43137295 aatataatctg 43137285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 77 - 151
Target Start/End: Original strand, 22967395 - 22967469
Alignment:
Q  77 cagttgcggagccataaattttatagagcctatgcgaaaaatttatcgtaaattcacatgtgacataatatataa 151  Q
    |||| |||||||||  || ||||| ||||||  |||||||||| |||||||| ||||||||||||||||||||||    
T  22967395 cagtggcggagccaggaaatttatggagcctgggcgaaaaattaatcgtaaactcacatgtgacataatatataa 22967469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 126 - 212
Target Start/End: Original strand, 3856775 - 3856860
Alignment:
Q  126 aaattcacatgtgacataatatataataatagtcataaatcaaaataaaagaggatcgccatttt-tctataatagtacagtttgaaa 212  Q
    |||||||||||||||||||||||||  |||||| |||||||||||||||  ||| ||| |||||| || |||| |||||| |||||||    
T  3856775 aaattcacatgtgacataatatata--aatagttataaatcaaaataaagtaggttcgtcattttgtcgataaaagtacaatttgaaa 3856860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 93 - 191
Target Start/End: Complemental strand, 53710698 - 53710602
Alignment:
Q  93 aattttatagagcctatgcgaaaaatttatcgtaaattcacatgtgacataatatataataatagtcataaatcaaaataaaagaggatcgccattttt 191  Q
    ||||| |||||||||  || |||||||||||| || ||||  ||||| ||||||||||  |||||||||||||| |||||||||| | ||| |||||||    
T  53710698 aatttcatagagcctgggcaaaaaatttatcgcaacttca--tgtgatataatatatacaaatagtcataaatcgaaataaaagaagttcgtcattttt 53710602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 150
Target Start/End: Original strand, 51817860 - 51817928
Alignment:
Q  82 gcggagccataaattttatagagcctatgcgaaaaatttatcgtaaattcacatgtgacataatatata 150  Q
    |||||||||  ||||  |||||||||   ||||||||| |||| |||||||||||||||||||||||||    
T  51817860 gcggagccaggaattacatagagcctggacgaaaaattaatcgcaaattcacatgtgacataatatata 51817928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 113 - 179
Target Start/End: Complemental strand, 5136430 - 5136366
Alignment:
Q  113 aaaaatttatcgtaaattcacatgtgacataatatataataatagtcataaatcaaaataaaagagg 179  Q
    ||||| |||| | ||||||||||||||| |||||||||  || |||||||||| |||||||||||||    
T  5136430 aaaaaattattgcaaattcacatgtgacgtaatatata--aacagtcataaattaaaataaaagagg 5136366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 151
Target Start/End: Complemental strand, 27936317 - 27936279
Alignment:
Q  113 aaaaatttatcgtaaattcacatgtgacataatatataa 151  Q
    |||||||||||| |||||||||||||| |||||||||||    
T  27936317 aaaaatttatcgcaaattcacatgtgagataatatataa 27936279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 151
Target Start/End: Original strand, 40080745 - 40080783
Alignment:
Q  113 aaaaatttatcgtaaattcacatgtgacataatatataa 151  Q
    ||||||| | |||||||||||||||||||||||||||||    
T  40080745 aaaaattaaacgtaaattcacatgtgacataatatataa 40080783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 126 - 236
Target Start/End: Original strand, 37381776 - 37381886
Alignment:
Q  126 aaattcacatgtgacataatatataataatag-tcataaatcaaaataaaagaggatcgcca-tttttctataatagtacagtttgaaatacgagagatg 223  Q
    |||||||||||||| ||||||||||  ||||| ||||||||| |||||||||||| ||| || ||| || | || |||||  ||| ||||| |||| |||    
T  37381776 aaattcacatgtgatataatatata--aatagttcataaatcgaaataaaagaggttcgtcactttgtcaacaaaagtacgatttaaaataagagatatg 37381873  T
Q  224 aaatataatctgt 236  Q
    |||||||| ||||    
T  37381874 aaatataacctgt 37381886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 177
Target Start/End: Original strand, 17073900 - 17073949
Alignment:
Q  126 aaattcacatgtgacataatatataataatagtcataaatcaaaataaaaga 177  Q
    ||||||| |||||||||||||||||  |||||||| ||||| ||||||||||    
T  17073900 aaattcatatgtgacataatatata--aatagtcaaaaatcgaaataaaaga 17073949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 150
Target Start/End: Complemental strand, 19237680 - 19237612
Alignment:
Q  82 gcggagccataaattttatagagcctatgcgaaaaatttatcgtaaattcacatgtgacataatatata 150  Q
    |||||||||  |||| ||||||||||| ||  |||| |||||| |||||||||||||  ||||||||||    
T  19237680 gcggagccaggaattatatagagcctaagcagaaaagttatcgcaaattcacatgtggtataatatata 19237612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 150
Target Start/End: Complemental strand, 21434458 - 21434418
Alignment:
Q  110 gcgaaaaatttatcgtaaattcacatgtgacataatatata 150  Q
    ||||||||||||||| || ||||||||||| ||||||||||    
T  21434458 gcgaaaaatttatcgcaagttcacatgtgatataatatata 21434418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 151
Target Start/End: Original strand, 42964803 - 42964831
Alignment:
Q  123 cgtaaattcacatgtgacataatatataa 151  Q
    |||||||||||||||||||||||||||||    
T  42964803 cgtaaattcacatgtgacataatatataa 42964831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 7e-24; HSPs: 32)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 113 - 236
Target Start/End: Complemental strand, 1955111 - 1954987
Alignment:
Q  113 aaaaatttatcgtaaattcacatgtgacataatatataataatagtcataaatcaaaataaaagaggatcgcca-tttttctataatagtacagtttgaa 211  Q
    |||||||||||| ||||||| |||| |||| |||||||  |||| ||| ||||||| |||||||||| ||| || |||||| | || |||||||||||||    
T  1955111 aaaaatttatcgcaaattcatatgtaacatcatatatataaataatcacaaatcaagataaaagaggttcgtcattttttcaacaaaagtacagtttgaa 1955012  T
Q  212 atacgagagatgaaatataatctgt 236  Q
    ||| |||||||||||||||||||||    
T  1955011 ataagagagatgaaatataatctgt 1954987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 82 - 150
Target Start/End: Original strand, 26655691 - 26655759
Alignment:
Q  82 gcggagccataaattttatagagcctatgcgaaaaatttatcgtaaattcacatgtgacataatatata 150  Q
    ||||||||| ||||||||||||||||  || ||||||||||||||||||||||||||||||||||||||    
T  26655691 gcggagccaaaaattttatagagcctgggcaaaaaatttatcgtaaattcacatgtgacataatatata 26655759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 123 - 236
Target Start/End: Complemental strand, 31393065 - 31392954
Alignment:
Q  123 cgtaaattcacatgtgacataatatataataatagtcataaatcaaaataaaagaggatcgccatttttctataatagtacagtttgaaatacgagagat 222  Q
    |||||||| ||||||||||||||||||||  ||||||||||||| || ||||||||| ||| ||||| || |||| |||||| ||| ||||| |||||||    
T  31393065 cgtaaatttacatgtgacataatatataa--atagtcataaatcgaattaaaagaggttcgtcatttgtcgataaaagtacaatttaaaataagagagat 31392968  T
Q  223 gaaatataatctgt 236  Q
    | || |||| ||||    
T  31392967 gtaacataacctgt 31392954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 77 - 151
Target Start/End: Original strand, 41250588 - 41250662
Alignment:
Q  77 cagttgcggagccataaattttatagagcctatgcgaaaaatttatcgtaaattcacatgtgacataatatataa 151  Q
    |||| ||||||||| ||| ||||| ||||||  |||||||||| |||||||||||||||||||||||||||||||    
T  41250588 cagtggcggagccagaaaatttatggagcctgggcgaaaaattaatcgtaaattcacatgtgacataatatataa 41250662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 77 - 151
Target Start/End: Original strand, 6402768 - 6402842
Alignment:
Q  77 cagttgcggagccataaattttatagagcctatgcgaaaaatttatcgtaaattcacatgtgacataatatataa 151  Q
    |||| |||||||||  || ||||| ||||||  |||||||||| |||||||||||||||||||||||||||||||    
T  6402768 cagtggcggagccaggaaatttatggagcctgggcgaaaaattaatcgtaaattcacatgtgacataatatataa 6402842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 93 - 179
Target Start/End: Original strand, 18425829 - 18425915
Alignment:
Q  93 aattttatagagcctatgcgaaaaatttatcgtaaattcacatgtgacataatatataataatagtcataaatcaaaataaaagagg 179  Q
    ||||||||||| | |  || ||||| |||||| |||||||||||||||||||||||||  |||||||| ||||| ||||||||||||    
T  18425829 aattttatagaacttgggcaaaaaaattatcgcaaattcacatgtgacataatatatataaatagtcagaaatcgaaataaaagagg 18425915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 154 - 231
Target Start/End: Complemental strand, 34907823 - 34907745
Alignment:
Q  154 atagtcataaatcaaaataaaagaggatcgccattttt-ctataatagtacagtttgaaatacgagagatgaaatataa 231  Q
    ||||| ||||||||||||||||||||||||  |||||| ||| || |||||| ||||||||| ||||||||||||||||    
T  34907823 atagtaataaatcaaaataaaagaggatcgttattttttctacaaaagtacattttgaaataagagagatgaaatataa 34907745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 124 - 231
Target Start/End: Original strand, 33453094 - 33453200
Alignment:
Q  124 gtaaattcacatgtgacataatatataataatagtcataaatcaaaataaaagaggatcgccatttt-tctataatagtacagtttgaaatacgagagat 222  Q
    |||||||||||||||| ||||||||||  |||| |||||||||||| ||||| ||| ||| |||||| || | || |||||| ||||||||| |||| ||    
T  33453094 gtaaattcacatgtgagataatatata--aataatcataaatcaaagtaaaataggttcgtcattttgtcaacaaaagtacaatttgaaataagagatat 33453191  T
Q  223 gaaatataa 231  Q
    |||||||||    
T  33453192 gaaatataa 33453200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 110 - 150
Target Start/End: Original strand, 40653797 - 40653837
Alignment:
Q  110 gcgaaaaatttatcgtaaattcacatgtgacataatatata 150  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  40653797 gcgaaaaatttatcgtaaattcacatgtgacataatatata 40653837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 82 - 150
Target Start/End: Original strand, 42755575 - 42755643
Alignment:
Q  82 gcggagccataaattttatagagcctatgcgaaaaatttatcgtaaattcacatgtgacataatatata 150  Q
    |||||||||  |||| ||||||||||  ||||||||||||||| |||||||||||||| ||||||||||    
T  42755575 gcggagccaggaattatatagagcctgggcgaaaaatttatcgcaaattcacatgtgatataatatata 42755643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 113 - 175
Target Start/End: Original strand, 4554331 - 4554391
Alignment:
Q  113 aaaaatttatcgtaaattcacatgtgacataatatataataatagtcataaatcaaaataaaa 175  Q
    |||||||||||||||||| | |||||||||||||||||  |||||||||||||| ||||||||    
T  4554331 aaaaatttatcgtaaatttagatgtgacataatatata--aatagtcataaatcgaaataaaa 4554391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 123 - 231
Target Start/End: Complemental strand, 12539843 - 12539736
Alignment:
Q  123 cgtaaattcacatgtgacataatatataataatagtcataaatcaaaataaaagaggatcgccatttt-tctataatagtacagtttgaaatacgagaga 221  Q
    |||||||| | |||||||||||||||||  ||||||||| |||| |||||||||||| ||  |||||| || |||| ||||||  |||||||| ||||||    
T  12539843 cgtaaatttatatgtgacataatatata--aatagtcatgaatcgaaataaaagaggctcatcattttgtcgataaaagtacaaattgaaataagagaga 12539746  T
Q  222 tgaaatataa 231  Q
    ||||| ||||    
T  12539745 tgaaacataa 12539736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 187 - 236
Target Start/End: Complemental strand, 13309796 - 13309747
Alignment:
Q  187 tttttctataatagtacagtttgaaatacgagagatgaaatataatctgt 236  Q
    |||||||| || |||||||||||||||| |||||||||||||||||||||    
T  13309796 tttttctacaaaagtacagtttgaaataagagagatgaaatataatctgt 13309747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 93 - 150
Target Start/End: Complemental strand, 39368619 - 39368562
Alignment:
Q  93 aattttatagagcctatgcgaaaaatttatcgtaaattcacatgtgacataatatata 150  Q
    |||||||||||| ||  |||||||||||||||||||||||||| ||||||| ||||||    
T  39368619 aattttatagagtctgagcgaaaaatttatcgtaaattcacatctgacatattatata 39368562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 113 - 179
Target Start/End: Original strand, 7071558 - 7071622
Alignment:
Q  113 aaaaatttatcgtaaattcacatgtgacataatatataataatagtcataaatcaaaataaaagagg 179  Q
    |||| ||||||| ||||||||||||||||||||| |||  || |||||||| |||||||||||||||    
T  7071558 aaaattttatcgcaaattcacatgtgacataatacata--aacagtcataagtcaaaataaaagagg 7071622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 113 - 166
Target Start/End: Original strand, 17090259 - 17090310
Alignment:
Q  113 aaaaatttatcgtaaattcacatgtgacataatatataataatagtcataaatc 166  Q
    ||||||||||||||||||||||| |||||||||||||   ||||||||||||||    
T  17090259 aaaaatttatcgtaaattcacatatgacataatatat--caatagtcataaatc 17090310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 113 - 151
Target Start/End: Original strand, 17444023 - 17444061
Alignment:
Q  113 aaaaatttatcgtaaattcacatgtgacataatatataa 151  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  17444023 aaaaattaatcgtaaattcacatgtgacataatatataa 17444061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 150
Target Start/End: Complemental strand, 34907919 - 34907879
Alignment:
Q  110 gcgaaaaatttatcgtaaattcacatgtgacataatatata 150  Q
    ||||||||||||||| ||||| |||||||||||||||||||    
T  34907919 gcgaaaaatttatcgcaaatttacatgtgacataatatata 34907879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 150
Target Start/End: Original strand, 35649539 - 35649607
Alignment:
Q  82 gcggagccataaattttatagagcctatgcgaaaaatttatcgtaaattcacatgtgacataatatata 150  Q
    ||||||||| |||||||||||||  |  || |||| || |||| |||||||||||||||||||||||||    
T  35649539 gcggagccagaaattttatagagtttgggcaaaaatttaatcgcaaattcacatgtgacataatatata 35649607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 234
Target Start/End: Complemental strand, 39368532 - 39368452
Alignment:
Q  154 atagtcataaatcaaaataaaagaggatcgccatttttctataatagtacagtttgaaatacgagagatgaaatataatct 234  Q
    ||||||||||| | |||||||||| | ||| |||||||| | || |||||| || |||||| || ||||||||||||||||    
T  39368532 atagtcataaaacgaaataaaagatgttcgtcatttttcaacaaaagtacaattggaaataagaaagatgaaatataatct 39368452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 172
Target Start/End: Complemental strand, 42443152 - 42443095
Alignment:
Q  113 aaaaatttatcgtaaattcacatgtgacataatatataataatagtcataaatcaaaata 172  Q
    ||||||| ||||||||||||||||||| ||||||||||  || ||||||||||| |||||    
T  42443152 aaaaattaatcgtaaattcacatgtgatataatatata--aacagtcataaatcgaaata 42443095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 151
Target Start/End: Complemental strand, 16406290 - 16406252
Alignment:
Q  113 aaaaatttatcgtaaattcacatgtgacataatatataa 151  Q
    ||||||| ||||||||||||||||||| |||||||||||    
T  16406290 aaaaattaatcgtaaattcacatgtgatataatatataa 16406252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 166
Target Start/End: Original strand, 17035748 - 17035799
Alignment:
Q  113 aaaaatttatcgtaaattcacatgtgacataatatataataatagtcataaatc 166  Q
    |||| |||||||||||||||||| |||||||||||||   ||||||||||||||    
T  17035748 aaaagtttatcgtaaattcacatatgacataatatat--caatagtcataaatc 17035799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 151
Target Start/End: Original strand, 26161734 - 26161772
Alignment:
Q  113 aaaaatttatcgtaaattcacatgtgacataatatataa 151  Q
    |||||||||||| |||||||||||||| |||||||||||    
T  26161734 aaaaatttatcgcaaattcacatgtgagataatatataa 26161772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 179
Target Start/End: Complemental strand, 26238740 - 26238689
Alignment:
Q  126 aaattcacatgtgacataatatataataatagtcataaatcaaaataaaagagg 179  Q
    ||||||||||| |||||||||||||  || ||||||||||| ||||||||||||    
T  26238740 aaattcacatgcgacataatatata--aacagtcataaatcgaaataaaagagg 26238689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 151
Target Start/End: Complemental strand, 35963892 - 35963814
Alignment:
Q  73 caaacagttgcggagccataaattttatagagcctatgcgaaaaatttatcgtaaattcacatgtgacataatatataa 151  Q
    |||||||| |||||| ||  || ||||| |||||   |||||||||| |||||||||||||||| || |||||||||||    
T  35963892 caaacagtggcggagtcaggaaatttatggagcccgagcgaaaaattaatcgtaaattcacatgcgatataatatataa 35963814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 151
Target Start/End: Complemental strand, 45122274 - 45122236
Alignment:
Q  113 aaaaatttatcgtaaattcacatgtgacataatatataa 151  Q
    |||||||||||| |||||||||||||| |||||||||||    
T  45122274 aaaaatttatcgcaaattcacatgtgatataatatataa 45122236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 96 - 149
Target Start/End: Original strand, 8058323 - 8058376
Alignment:
Q  96 tttatagagcctatgcgaaaaatttatcgtaaattcacatgtgacataatatat 149  Q
    ||||| ||||||  || |||||||||||| |||||||||||| |||||||||||    
T  8058323 tttatggagcctgggcaaaaaatttatcgcaaattcacatgttacataatatat 8058376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 82 - 151
Target Start/End: Complemental strand, 18982738 - 18982669
Alignment:
Q  82 gcggagccataaattttatagagcctatgcgaaaaatttatcgtaaattcacatgtgacataatatataa 151  Q
    |||||| || ||| ||||| ||||||  || ||||||  |||||||||||||||| ||||||||||||||    
T  18982738 gcggagtcagaaaatttatggagcctgggcaaaaaataaatcgtaaattcacatgcgacataatatataa 18982669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 126 - 174
Target Start/End: Original strand, 19951740 - 19951786
Alignment:
Q  126 aaattcacatgtgacataatatataataatagtcataaatcaaaataaa 174  Q
    |||||||||||| ||||||||||||  |||||||||||||| |||||||    
T  19951740 aaattcacatgtaacataatatata--aatagtcataaatcgaaataaa 19951786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 126 - 174
Target Start/End: Original strand, 45261753 - 45261799
Alignment:
Q  126 aaattcacatgtgacataatatataataatagtcataaatcaaaataaa 174  Q
    |||||||||||||| ||||||||||  |||||||||||||| |||||||    
T  45261753 aaattcacatgtgatataatatata--aatagtcataaatctaaataaa 45261799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 150
Target Start/End: Complemental strand, 13309846 - 13309810
Alignment:
Q  114 aaaatttatcgtaaattcacatgtgacataatatata 150  Q
    ||||||||||| ||||||| |||||||||||||||||    
T  13309846 aaaatttatcgcaaattcatatgtgacataatatata 13309810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 30)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 125 - 236
Target Start/End: Complemental strand, 28846873 - 28846763
Alignment:
Q  125 taaattcacatgtgacataatatataataatagtcataaatcaaaataaaagaggatcgccatttt-tctataatagtacagtttgaaatacgagagatg 223  Q
    ||||||||||||||| |||||||||||  ||||||||||||| |||||||||||  ||| |||||| || |||| |||||| ||||||||| ||||||||    
T  28846873 taaattcacatgtgatataatatataa--atagtcataaatcgaaataaaagagattcgtcattttatcaataaaagtacaatttgaaataagagagatg 28846776  T
Q  224 aaatataatctgt 236  Q
    ||| |||||||||    
T  28846775 aaacataatctgt 28846763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 76 - 231
Target Start/End: Complemental strand, 21958831 - 21958675
Alignment:
Q  76 acagttgcggagccataaattttatagagcctatgcgaaaaatttatcgtaaattcacatgtgacataatatataataatagtcataaatcaaaataaaa 175  Q
    ||||| ||||||| |  ||||||||||||| |  || |||| ||||||| ||||||| |||||||||||||||||  |||||||||||||| ||||||||    
T  21958831 acagtggcggagctaggaattttatagagcttgggcaaaaagtttatcgcaaattcatatgtgacataatatatataaatagtcataaatcgaaataaaa 21958732  T
Q  176 gaggatcgcca-tttttctataatagtacagtttgaaatacgagagatgaaatataa 231  Q
    |||| ||  || |||||| | || |||||| ||| ||||| || |||||||||||||    
T  21958731 gaggttcttcattttttcaacaaaagtacaattttaaataagaaagatgaaatataa 21958675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 77 - 231
Target Start/End: Original strand, 24592196 - 24592349
Alignment:
Q  77 cagttgcggagccataaattttatagagcctatgcgaaaaatttatcgtaaattcacatgtgacataatatataataatagtcataaatcaaaataaaag 176  Q
    |||| |||||||||  |||||||||||||||  || |||  || | |||||||||||||||||||||| |||||||  |||||||||||| | |||||||    
T  24592196 cagtggcggagccaggaattttatagagcctgagcaaaattttaaccgtaaattcacatgtgacataacatataat--tagtcataaatcgagataaaag 24592293  T
Q  177 aggatcgccatttt-tctataatagtacagtttgaaatacgagagatgaaatataa 231  Q
    ||  ||| |||||| || |||  || ||| ||||||||| ||||||||||| ||||    
T  24592294 agactcgtcattttgtcaatagaagaacaatttgaaataagagagatgaaacataa 24592349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 121 - 231
Target Start/End: Complemental strand, 42447196 - 42447088
Alignment:
Q  121 atcgtaaattcacatgtgacataatatataataatagtcataaatcaaaataaaagaggatcgccatttt-tctataatagtacagtttgaaatacgaga 219  Q
    |||| |||||||||||||||||||||||||  || ||||||||||| |||||||||||  ||| |||||| || ||||||||||| |||| |||  ||||    
T  42447196 atcgcaaattcacatgtgacataatatata--aacagtcataaatcgaaataaaagagactcgtcattttgtcaataatagtacaatttg-aatgagaga 42447100  T
Q  220 gatgaaatataa 231  Q
    ||||||||||||    
T  42447099 gatgaaatataa 42447088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 126 - 231
Target Start/End: Complemental strand, 10468018 - 10467914
Alignment:
Q  126 aaattcacatgtgacataatatataataatagtcataaatcaaaataaaagaggatcgccatttt-tctataatagtacagtttgaaatacgagagatga 224  Q
    ||||||||||| || |||||||||||  ||||||||||||| |||||||||||| ||| |||||| |  |||| |||||| ||||||||| |||||||||    
T  10468018 aaattcacatgcgaaataatatataa--atagtcataaatcgaaataaaagaggctcgtcattttattgataaaagtacaatttgaaataagagagatga 10467921  T
Q  225 aatataa 231  Q
    || ||||    
T  10467920 aacataa 10467914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 77 - 166
Target Start/End: Original strand, 24019355 - 24019442
Alignment:
Q  77 cagttgcggagccataaattttatagagcctatgcgaaaaatttatcgtaaattcacatgtgacataatatataataatagtcataaatc 166  Q
    |||| |||||||||  || ||||| ||||||  |||||||||| ||||||||||||||||||| ||||||||||  ||||||||||||||    
T  24019355 cagtggcggagccaggaaatttatggagcctgggcgaaaaattaatcgtaaattcacatgtgatataatatata--aatagtcataaatc 24019442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 77 - 151
Target Start/End: Complemental strand, 28524401 - 28524327
Alignment:
Q  77 cagttgcggagccataaattttatagagcctatgcgaaaaatttatcgtaaattcacatgtgacataatatataa 151  Q
    |||| |||||||||  || ||||| ||||||  |||||||||| |||||||||||||||||||||||||||||||    
T  28524401 cagtggcggagccaggaaatttatggagcctgggcgaaaaattaatcgtaaattcacatgtgacataatatataa 28524327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 77 - 166
Target Start/End: Complemental strand, 39915717 - 39915630
Alignment:
Q  77 cagttgcggagccataaattttatagagcctatgcgaaaaatttatcgtaaattcacatgtgacataatatataataatagtcataaatc 166  Q
    |||| |||||||||  || ||||| ||||||  |||||||||| ||||||||||||||||||| ||||||||||  ||||||||||||||    
T  39915717 cagtggcggagccaggaaatttatggagcctgggcgaaaaattaatcgtaaattcacatgtgatataatatata--aatagtcataaatc 39915630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 77 - 150
Target Start/End: Complemental strand, 17839645 - 17839572
Alignment:
Q  77 cagttgcggagccataaattttatagagcctatgcgaaaaatttatcgtaaattcacatgtgacataatatata 150  Q
    |||| |||||||||  ||||  |||||||||  ||||||||||||||| |||||||||||||||||||||||||    
T  17839645 cagtggcggagccaggaattacatagagcctgggcgaaaaatttatcgcaaattcacatgtgacataatatata 17839572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 121 - 231
Target Start/End: Complemental strand, 9256661 - 9256552
Alignment:
Q  121 atcgtaaattcacatgtgacataatatataataatagtcataaatcaaaataaaagaggatcgccatttttct-ataatagtacagtttgaaatacgaga 219  Q
    |||| |||||||| || ||||||||||||||  |||||||||||| |||||| |||||| ||| ||||||  | |||| |||||| ||||||||| ||||    
T  9256661 atcgcaaattcacgtgcgacataatatataa--atagtcataaattaaaatacaagaggctcgtcattttgttgataaaagtacaatttgaaataagaga 9256564  T
Q  220 gatgaaatataa 231  Q
    ||||||| ||||    
T  9256563 gatgaaacataa 9256552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 86 - 232
Target Start/End: Original strand, 10014318 - 10014448
Alignment:
Q  86 agccataaattttatagagcctatgcgaaaaatttatcgtaaattcacatgtgacataatatataataatagtcataaatcaaaataaaagaggatcgcc 185  Q
    ||||| ||||| ||||||||||  ||||||||||||||| ||||||| |||||||||||||||||              |||| |||||||||||||| |    
T  10014318 agccagaaattatatagagcctgggcgaaaaatttatcgcaaattcatatgtgacataatatata--------------tcaagataaaagaggatcgtc 10014403  T
Q  186 atttttctataatagtacagtttgaaatacgagagatgaaatataat 232  Q
     |||||  | || |||||||||||||||| |||||||||||||||||    
T  10014404 gttttt--acaaaagtacagtttgaaataagagagatgaaatataat 10014448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 77 - 151
Target Start/End: Complemental strand, 29632591 - 29632517
Alignment:
Q  77 cagttgcggagccataaattttatagagcctatgcgaaaaatttatcgtaaattcacatgtgacataatatataa 151  Q
    |||| |||||||||  || ||||| ||||||  |||||||||| ||||||||||||||||||| |||||||||||    
T  29632591 cagtggcggagccaggaaatttatggagcctgggcgaaaaattaatcgtaaattcacatgtgatataatatataa 29632517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 77 - 150
Target Start/End: Original strand, 5637567 - 5637640
Alignment:
Q  77 cagttgcggagccataaattttatagagcctatgcgaaaaatttatcgtaaattcacatgtgacataatatata 150  Q
    |||| |||||||||  ||||  ||||||| |  ||||||||||||||| |||||||||||||||||||||||||    
T  5637567 cagtggcggagccaggaattacatagagcttgggcgaaaaatttatcgcaaattcacatgtgacataatatata 5637640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 77 - 235
Target Start/End: Original strand, 40145869 - 40146026
Alignment:
Q  77 cagttgcggagccataaattttatagagcctatgcgaaaaatttatcgtaaattcacatgtgacataatatataataatagtcataaatcaaaataaaag 176  Q
    |||| ||||||||||||||||||||||   |  || |||  || | || ||||| | ||||||||||||||||||  ||| ||||||||| ||||| |||    
T  40145869 cagtggcggagccataaattttatagattttgggcaaaattttgaccgcaaatttatatgtgacataatatataa--ataatcataaatcgaaatagaag 40145966  T
Q  177 aggatcgccatttt-tctataatagtacagtttgaaatacgagagatgaaatataatctg 235  Q
    | | ||| |||||| || |||| |||| ||||| ||||| ||||||||||| ||||||||    
T  40145967 aagctcgtcattttgtcaataaaagtatagtttaaaataagagagatgaaacataatctg 40146026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 117 - 179
Target Start/End: Original strand, 40469900 - 40469960
Alignment:
Q  117 atttatcgtaaattcacatgtgacataatatataataatagtcataaatcaaaataaaagagg 179  Q
    |||||||||||||||||||| || ||||||||||  || ||||||||||| ||||||||||||    
T  40469900 atttatcgtaaattcacatgcgatataatatata--aacagtcataaatcgaaataaaagagg 40469960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 139 - 231
Target Start/End: Original strand, 2826227 - 2826318
Alignment:
Q  139 acataatatataataatagtcataaatcaaaataaaagaggatcgccatttt-tctataatagtacagtttgaaatacgagagatgaaatataa 231  Q
    |||||||||||||  |||||||||||||||||||||| ||| | | |||||| || |||| |||||| ||||||||| |||| |||| ||||||    
T  2826227 acataatatataa--atagtcataaatcaaaataaaataggtttgtcattttatcaataaaagtacaatttgaaataagagacatgacatataa 2826318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 113 - 151
Target Start/End: Original strand, 29727381 - 29727419
Alignment:
Q  113 aaaaatttatcgtaaattcacatgtgacataatatataa 151  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  29727381 aaaaattaatcgtaaattcacatgtgacataatatataa 29727419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 153 - 234
Target Start/End: Complemental strand, 32359664 - 32359582
Alignment:
Q  153 aatagtcataaatcaaaataaaagaggatcgccatttt-tctataatagtacagtttgaaatacgagagatgaaatataatct 234  Q
    |||||||||||||| ||||||||||||   |||||||| || | || | |||| ||||||||| |||||||||||||||||||    
T  32359664 aatagtcataaatcgaaataaaagaggtatgccattttgtcaacaaaactacaatttgaaataagagagatgaaatataatct 32359582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 175
Target Start/End: Complemental strand, 3436369 - 3436312
Alignment:
Q  117 atttatcgtaaattcacatgtgacataatatataataatagtcataaatc-aaaataaaa 175  Q
    |||||||| |||||||||||||||||||||||||  || ||||||||||| |||||||||    
T  3436369 atttatcgcaaattcacatgtgacataatatata--aacagtcataaatcgaaaataaaa 3436312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 150
Target Start/End: Original strand, 10395994 - 10396046
Alignment:
Q  98 tatagagcctatgcgaaaaatttatcgtaaattcacatgtgacataatatata 150  Q
    ||||||||||  |||||||| |||||  |||||||||||||||||||||||||    
T  10395994 tatagagccttggcgaaaaaattatctcaaattcacatgtgacataatatata 10396046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 231
Target Start/End: Original strand, 13152297 - 13152406
Alignment:
Q  121 atcgtaaattcacatgtgacataatatataataatagtcataaatcaaaataaaagaggatcgccatttt-tctataatagtacagtttgaaatacgaga 219  Q
    |||| ||||||||||| |||||||||||||  |||| ||||||||  |||||||| ||| | | |||||| || |||| | |||| ||||||||| ||||    
T  13152297 atcgcaaattcacatgcgacataatatata--aataatcataaattgaaataaaataggcttgtcattttgtcgataaaactacaatttgaaataagaga 13152394  T
Q  220 gatgaaatataa 231  Q
    ||||||| ||||    
T  13152395 gatgaaacataa 13152406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 126 - 231
Target Start/End: Complemental strand, 24333984 - 24333880
Alignment:
Q  126 aaattcacatgtgacataatatataataatagtcataaatcaaaataaaagagg-atcgccatttttctataatagtacagtttgaaatacgagagatga 224  Q
    |||||||||||||| ||||||||||  |||||||||||||| |||||||| ||| |   | |||| || | || |||||| ||||||||| |||||||||    
T  24333984 aaattcacatgtgatataatatata--aatagtcataaatcgaaataaaataggcacatcaatttgtcaacaaaagtacaatttgaaataagagagatga 24333887  T
Q  225 aatataa 231  Q
    || ||||    
T  24333886 aacataa 24333880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 153 - 231
Target Start/End: Complemental strand, 32343058 - 32342979
Alignment:
Q  153 aatagtcataaatcaaaataaaagaggatcgccatttt-tctataatagtacagtttgaaatacgagagatgaaatataa 231  Q
    |||||||||||||| ||||||||||||   |||||||| || | || | |||| ||||||||| ||||||||||||||||    
T  32343058 aatagtcataaatcgaaataaaagaggtatgccattttgtcaacaaaactacaatttgaaataagagagatgaaatataa 32342979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 153 - 231
Target Start/End: Complemental strand, 32355545 - 32355466
Alignment:
Q  153 aatagtcataaatcaaaataaaagaggatcgccatttt-tctataatagtacagtttgaaatacgagagatgaaatataa 231  Q
    |||||||||||||| ||||||||||||   |||||||| || | || | |||| ||||||||| ||||||||||||||||    
T  32355545 aatagtcataaatcgaaataaaagaggtatgccattttgtcaacaaaactacaatttgaaataagagagatgaaatataa 32355466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 151
Target Start/End: Complemental strand, 27046983 - 27046945
Alignment:
Q  113 aaaaatttatcgtaaattcacatgtgacataatatataa 151  Q
    |||||||||||| ||||| ||||||||||||||||||||    
T  27046983 aaaaatttatcgcaaatttacatgtgacataatatataa 27046945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 175
Target Start/End: Complemental strand, 27191038 - 27190991
Alignment:
Q  126 aaattcacatgtgacataatatataataatagtcataaatcaaaataaaa 175  Q
    |||||||||| ||||||||||||||  ||||||||||||| |||||||||    
T  27191038 aaattcacatatgacataatatata--aatagtcataaattaaaataaaa 27190991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 113 - 150
Target Start/End: Complemental strand, 34845283 - 34845246
Alignment:
Q  113 aaaaatttatcgtaaattcacatgtgacataatatata 150  Q
    |||||||||||| |||||||||| ||||||||||||||    
T  34845283 aaaaatttatcgcaaattcacatatgacataatatata 34845246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 172
Target Start/End: Original strand, 3647779 - 3647835
Alignment:
Q  113 aaaaatttatcgtaaattcacatgtgacataatatataataatagtcataaatcaaaata 172  Q
    ||||||| |||||||||||||||||| |||||||||||  || ||| |||||||||||||    
T  3647779 aaaaattaatcgtaaattcacatgtg-cataatatata--aacagttataaatcaaaata 3647835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 149
Target Start/End: Complemental strand, 7279204 - 7279168
Alignment:
Q  113 aaaaatttatcgtaaattcacatgtgacataatatat 149  Q
    |||||||||||| ||||||||||| ||||||||||||    
T  7279204 aaaaatttatcgcaaattcacatgcgacataatatat 7279168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 141
Target Start/End: Complemental strand, 39532551 - 39532487
Alignment:
Q  77 cagttgcggagccataaattttatagagcctatgcgaaaaatttatcgtaaattcacatgtgaca 141  Q
    |||| |||||||||  |||||||||||||||   |||| ||||||| | ||||||||||||||||    
T  39532551 cagtggcggagccaggaattttatagagcctgaccgaagaatttattgcaaattcacatgtgaca 39532487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 76 - 231
Target Start/End: Original strand, 214017 - 214173
Alignment:
Q  76 acagttgcggagccataaattttatagagcctatgcgaaaaatttatcgtaaattcacatgtgacataatatataataatagtcataaatcaaaataaaa 175  Q
    ||||| ||||||| |  ||||||||||||| |  || |||| ||||||| ||||||| |||||||||||||||||  |||||||||||||| ||||||||    
T  214017 acagtggcggagctaggaattttatagagcttgggcaaaaagtttatcgcaaattcatatgtgacataatatatataaatagtcataaatcgaaataaaa 214116  T
Q  176 gaggatcgcca-tttttctataatagtacagtttgaaatacgagagatgaaatataa 231  Q
    |||| ||  || |||||| | || |||||| ||| ||||| || |||||||||||||    
T  214117 gaggttcttcattttttcaacaaaagtacaattttaaataagaaagatgaaatataa 214173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0170 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: scaffold0170
Description:

Target: scaffold0170; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 113 - 231
Target Start/End: Complemental strand, 9358 - 9239
Alignment:
Q  113 aaaaatttatcgtaaattcacatgtgacataatatataataatagtcataaatcaaaataaaagaggatcgcca-tttttctataatagtacagtttgaa 211  Q
    |||| ||||||| ||||| | |||||||||||||||||  ||||||||||||| ||||||||||||| ||| || |||||| | || |||||| ||||||    
T  9358 aaaagtttatcgcaaattgatatgtgacataatatatataaatagtcataaattaaaataaaagaggttcgtcattttttcaacaaaagtacaatttgaa 9259  T
Q  212 atacgagagatgaaatataa 231  Q
    ||| || |||||||||||||    
T  9258 ataagaaagatgaaatataa 9239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0726 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0726
Description:

Target: scaffold0726; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 126 - 235
Target Start/End: Complemental strand, 1150 - 1042
Alignment:
Q  126 aaattcacatgtgacataatatataataatagtcataaatcaaaataaaagaggatcgccatttt-tctataatagtacagtttgaaatacgagagatga 224  Q
    |||||||||||||||||||| |||||  ||| ||| |||||||||||||||||  ||| |||||| || |||| |||||| ||||||||| |||||||||    
T  1150 aaattcacatgtgacataatttataa--ataatcacaaatcaaaataaaagagactcgtcattttgtcaataaaagtacaatttgaaataagagagatga 1053  T
Q  225 aatataatctg 235  Q
    || ||||||||    
T  1052 aacataatctg 1042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 77 - 151
Target Start/End: Complemental strand, 18773 - 18699
Alignment:
Q  77 cagttgcggagccataaattttatagagcctatgcgaaaaatttatcgtaaattcacatgtgacataatatataa 151  Q
    |||| |||||||||| || ||||| |||||   || ||||||| |||||||||||||||||||||||||||||||    
T  18773 cagtggcggagccatgaaatttatggagcccgggcaaaaaattaatcgtaaattcacatgtgacataatatataa 18699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 77 - 151
Target Start/End: Original strand, 479418 - 479492
Alignment:
Q  77 cagttgcggagccataaattttatagagcctatgcgaaaaatttatcgtaaattcacatgtgacataatatataa 151  Q
    |||| |||||||||  || ||||| ||||||  |||||||||| ||||||||||||||||||| |||||||||||    
T  479418 cagtggcggagccaggaaatttatggagcctgggcgaaaaattaatcgtaaattcacatgtgatataatatataa 479492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 144
Target Start/End: Original strand, 21949 - 22011
Alignment:
Q  82 gcggagccataaattttatagagcctatgcgaaaaatttatcgtaaattcacatgtgacataa 144  Q
    |||||||||  || ||||| ||||| | || |||||||||||| |||||||||||||||||||    
T  21949 gcggagccaggaaatttatggagcccaggcaaaaaatttatcgcaaattcacatgtgacataa 22011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 144
Target Start/End: Original strand, 27451 - 27513
Alignment:
Q  82 gcggagccataaattttatagagcctatgcgaaaaatttatcgtaaattcacatgtgacataa 144  Q
    |||||||||  || ||||| ||||| | || |||||||||||| |||||||||||||||||||    
T  27451 gcggagccaggaaatttatggagcccaggcaaaaaatttatcgcaaattcacatgtgacataa 27513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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