View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15574_high_13 (Length: 256)

Name: NF15574_high_13
Description: NF15574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15574_high_13
NF15574_high_13
[»] chr6 (4 HSPs)
chr6 (2-217)||(16874520-16874736)
chr6 (2-217)||(16580659-16580875)
chr6 (2-217)||(16614505-16614721)
chr6 (2-217)||(16572640-16572854)
[»] chr2 (2 HSPs)
chr2 (6-238)||(233310-233535)
chr2 (83-210)||(21629488-21629615)
[»] chr7 (1 HSPs)
chr7 (37-238)||(48298426-48298618)
[»] chr1 (1 HSPs)
chr1 (39-238)||(7391995-7392185)
[»] scaffold0256 (1 HSPs)
scaffold0256 (109-237)||(10838-10963)


Alignment Details
Target: chr6 (Bit Score: 137; Significance: 1e-71; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 2 - 217
Target Start/End: Original strand, 16874520 - 16874736
Alignment:
Q  2 aatcactttctctttatcgtatgaatctgagtgttgatcagctcgcaaattttttcgacctctctctttctcgtgttc-tgcttcatagtattgtcaata 100  Q
    |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||| ||    
T  16874520 aatcactttctcttcatcgtatgaatctgagtgtagatcagctcgcaaattttttcgacctctctctttctcatgttcatacttcatagtattgtcagta 16874619  T
Q  101 gcagtgtcatgaatgacgagcttcatgcaagctgggatcagccatctgggtgcattgtgttctgaaatgttgaacactcaagggtgcagactttggtgtt 200  Q
    | ||||| |||||||| |||| ||||||||| |||||||||||||||||||||||||||||| |||||||||||| ||| | ||||||| |||||| |||    
T  16874620 ggagtgtgatgaatgatgagcatcatgcaaggtgggatcagccatctgggtgcattgtgttccgaaatgttgaactctctatggtgcaggctttggcgtt 16874719  T
Q  201 ccagttgactgagaaat 217  Q
    | | |||||||||||||    
T  16874720 cgaattgactgagaaat 16874736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 2 - 217
Target Start/End: Original strand, 16580659 - 16580875
Alignment:
Q  2 aatcactttctctttatcgtatgaatctgagtgttgatcagctcgcaaattttttcgacctctctctttctcgtgttc-tgcttcatagtattgtcaata 100  Q
    |||||||||||||| ||||||||||||||||||| | ||||||| ||||||||||||| ||||||||||||||||||| | |||||||||||||||| ||    
T  16580659 aatcactttctcttcatcgtatgaatctgagtgtgggtcagctcacaaattttttcgatctctctctttctcgtgttcatacttcatagtattgtcagta 16580758  T
Q  101 gcagtgtcatgaatgacgagcttcatgcaagctgggatcagccatctgggtgcattgtgttctgaaatgttgaacactcaagggtgcagactttggtgtt 200  Q
    | ||||| |||||| |||||| ||||||||| |||||||||||||||||||||||||||||| |||||||||||| ||| | ||||||| |||||| |||    
T  16580759 ggagtgtgatgaattacgagcatcatgcaaggtgggatcagccatctgggtgcattgtgttccgaaatgttgaaccctctatggtgcaggctttggcgtt 16580858  T
Q  201 ccagttgactgagaaat 217  Q
    | ||||||| |||||||    
T  16580859 cgagttgaccgagaaat 16580875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 2 - 217
Target Start/End: Complemental strand, 16614721 - 16614505
Alignment:
Q  2 aatcactttctctttatcgtatgaatctgagtgttgatcagctcgcaaattttttcgacctctctctttctcgtgttc-tgcttcatagtattgtcaata 100  Q
    |||||||||||||| ||||||||||||||||||| | ||||||| ||||||||||||| ||||||||||||||||||| | |||||||||||||||| ||    
T  16614721 aatcactttctcttcatcgtatgaatctgagtgtgggtcagctcacaaattttttcgatctctctctttctcgtgttcatacttcatagtattgtcagta 16614622  T
Q  101 gcagtgtcatgaatgacgagcttcatgcaagctgggatcagccatctgggtgcattgtgttctgaaatgttgaacactcaagggtgcagactttggtgtt 200  Q
    | ||||| |||||| |||||| ||||||||| |||||||||||||||||||||||||||||| |||||||||||| ||| | ||||||| |||||| |||    
T  16614621 ggagtgtgatgaattacgagcatcatgcaaggtgggatcagccatctgggtgcattgtgttccgaaatgttgaaccctctatggtgcaggctttggcgtt 16614522  T
Q  201 ccagttgactgagaaat 217  Q
    | ||||||| |||||||    
T  16614521 cgagttgaccgagaaat 16614505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 2 - 217
Target Start/End: Original strand, 16572640 - 16572854
Alignment:
Q  2 aatcactttctctttatcgtatgaatctgagtgttgatcagctcgcaaattttttcgacctctctctttctcgtgttc-tgcttcatagtattgtcaata 100  Q
    |||||||||||||| ||||||||||||||||||| |||||||| |||||||||||| ||||||||  ||||||||||| | ||| |||||||||||| ||    
T  16572640 aatcactttctcttcatcgtatgaatctgagtgtggatcagcttgcaaattttttcaacctctct--ttctcgtgttcatacttaatagtattgtcagta 16572737  T
Q  101 gcagtgtcatgaatgacgagcttcatgcaagctgggatcagccatctgggtgcattgtgttctgaaatgttgaacactcaagggtgcagactttggtgtt 200  Q
    | | ||| ||||||||||||| | ||||||| |||||||||||||||||||||||||||||| |||||||||||| ||| | ||||||| |||||| |||    
T  16572738 ggaatgtgatgaatgacgagcataatgcaaggtgggatcagccatctgggtgcattgtgttccgaaatgttgaaccctctatggtgcaggctttggcgtt 16572837  T
Q  201 ccagttgactgagaaat 217  Q
    | |||||||||||||||    
T  16572838 cgagttgactgagaaat 16572854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 6 - 238
Target Start/End: Complemental strand, 233535 - 233310
Alignment:
Q  6 actttctctttatcgtatgaatct--gagtgttgatcagctcgcaaattttttcgacctctctctttctcgtgttctgcttcatagtattgtcaatagca 103  Q
    |||||||||| ||| ||||| |||  |||||| ||||||||| ||||||||||||| ||||||||| |||||||||      |||||||||||| ||| |    
T  233535 actttctcttcatcatatgattctttgagtgtggatcagctcacaaattttttcgatctctctcttcctcgtgttc------atagtattgtcagtagga 233442  T
Q  104 gtgtcatgaatgacgagcttcatgcaagctgggatcagccatctgggtgcattgtgttctgaaatgttgaacactcaagggtgcagactttggtgttcca 203  Q
       | || ||||| ||||||||||||||||||||||||||| ||||||||||| | ||| |||||||||||||||||||||||||| ||||||  |||||    
T  233441 tgatgatcaatgaggagcttcatgcaagctgggatcagccaactgggtgcattattttcagaaatgttgaacactcaagggtgcaggctttggcattcca 233342  T
Q  204 gttgactgagaaataattatctatcctagcagaga 238  Q
    |||||||||||   ||||||||||||| |||||||    
T  233341 gttgactgaga---aattatctatccttgcagaga 233310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 83 - 210
Target Start/End: Original strand, 21629488 - 21629615
Alignment:
Q  83 ttcatagtattgtcaatagcagtgtcatgaatgacgagcttcatgcaagctgggatcagccatctgggtgcattgtgttctgaaatgttgaacactcaag 182  Q
    ||||||| ||||||| ||  ||||| ||||||| ||||||||||||  |||||||||| ||||||||||||||||| ||| |||||||||||||||||||    
T  21629488 ttcatagaattgtcactaagagtgtgatgaatggcgagcttcatgctggctgggatcaaccatctgggtgcattgtattccgaaatgttgaacactcaag 21629587  T
Q  183 ggtgcagactttggtgttccagttgact 210  Q
    ||||||| | |||| |||| ||||||||    
T  21629588 ggtgcaggccttggcgttcgagttgact 21629615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 37 - 238
Target Start/End: Complemental strand, 48298618 - 48298426
Alignment:
Q  37 gatcagctcgcaaattttttcgacctctctctttctcgtgttctgcttcatagtattgtcaatagcagtgtcatgaatgacgagcttcatgcaagctggg 136  Q
    ||||||||| ||||||||||||| ||||||||| |||||| ||      |||||||||||| ||| |   | || ||||| |||||||||||||||||||    
T  48298618 gatcagctcacaaattttttcgatctctctcttcctcgtgctc------atagtattgtcagtaggatgatgatcaatgaggagcttcatgcaagctggg 48298525  T
Q  137 atcagccatctgggtgcattgtgttctgaaatgttgaacactcaagggtgcagactttggtgttccagttgactgagaaataattatctatcctagcaga 236  Q
    |||||||| ||||||||||| | ||| |||||||||||| ||||||||||||| ||||||  ||||||||||||||||   ||||||||||||| |||||    
T  48298524 atcagccaactgggtgcattattttcagaaatgttgaactctcaagggtgcaggctttggcattccagttgactgaga---aattatctatccttgcaga 48298428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 39 - 238
Target Start/End: Original strand, 7391995 - 7392185
Alignment:
Q  39 tcagctcgcaaattttttcgacctctctctttctcgtgttctgcttcatagtattgtcaatagcagtgtcatgaatgacgagcttcatgcaagctgggat 138  Q
    ||||||| ||||||||||||| ||||||||| |||||||||      |||||||||||| ||| |   |  | ||||| |||||||||||||||||||||    
T  7391995 tcagctcacaaattttttcgatctctctcttcctcgtgttc------atagtattgtcagtaggatgatggtcaatgaggagcttcatgcaagctgggat 7392088  T
Q  139 cagccatctgggtgcattgtgttctgaaatgttgaacactcaagggtgcagactttggtgttccagttgactgagaaataattatctatcctagcagaga 238  Q
    || ||| ||||||||||| | ||| |||||||||||||||||||||||||| ||||||  ||||||||||||||||   ||||||||||||| |||||||    
T  7392089 caaccaactgggtgcattattttccgaaatgttgaacactcaagggtgcaggctttggcattccagttgactgaga---aattatctatccttgcagaga 7392185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0256 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 109 - 237
Target Start/End: Complemental strand, 10963 - 10838
Alignment:
Q  109 atgaatgacgagcttcatgcaagctgggatcagccatctgggtgcattgtgttctgaaatgttgaacactcaagggtgcagactttggtgttccagttga 208  Q
    |||||||| ||||||||||  |||||||| || |||||||| ||||||||||||  ||||||||||||||||||||||||| |||||  |||| ||||||    
T  10963 atgaatgatgagcttcatgtcagctgggaccaaccatctggatgcattgtgttccaaaatgttgaacactcaagggtgcaggctttgtcgttcaagttga 10864  T
Q  209 ctgagaaataattatctatcctagcagag 237  Q
    ||||||   ||||||||||||| ||||||    
T  10863 ctgaga---aattatctatccttgcagag 10838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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