View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15574_high_7 (Length: 329)

Name: NF15574_high_7
Description: NF15574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15574_high_7
NF15574_high_7
[»] chr7 (2 HSPs)
chr7 (22-311)||(41689006-41689295)
chr7 (28-153)||(41681723-41681848)
[»] chr8 (1 HSPs)
chr8 (23-76)||(42694112-42694165)
[»] chr4 (3 HSPs)
chr4 (121-154)||(45095803-45095836)
chr4 (96-149)||(44669009-44669062)
chr4 (96-149)||(44688285-44688338)
[»] chr1 (3 HSPs)
chr1 (24-71)||(43908127-43908174)
chr1 (39-78)||(43993934-43993973)
chr1 (98-150)||(43986536-43986588)
[»] chr2 (1 HSPs)
chr2 (24-78)||(20578413-20578467)


Alignment Details
Target: chr7 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 22 - 311
Target Start/End: Original strand, 41689006 - 41689295
Alignment:
Q  22 atgggaaatttggaatagttttccaagaatcttcgccaaaggtataaattttggtcagataatcattcgtattgtgcacaactagtagcaccttatattt 121  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  41689006 atgggaaatttggaatagttttccaagaatcttcaccaaaggtataaattttggtcagataatcattcgtattgtgcacaactagtagcatcttatattt 41689105  T
Q  122 gtcgttaacttgatcatagccaaagccataatagcaatgcacgcaatcaagcgatgaagattttggagaatttttggatataaacctgatagaaaggttg 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41689106 gtcgttaacttgatcatagccaaagccataatagcaatgcacgcaatcaagcgatgaagattttggagaatttttggatataaacctgatagaaaggttg 41689205  T
Q  222 tatagactgaaactatgttgagagctaatatacatacacaacaacccattgcatgaacctagaatattgcgagacgtagtgactgtgaag 311  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  41689206 tatagactgaaactacgttgagagctaatatacatacacaacaacccatagcatgaacctagaatattgcgagacgtagtgactgtgaag 41689295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 28 - 153
Target Start/End: Original strand, 41681723 - 41681848
Alignment:
Q  28 aatttggaatagttttccaagaatcttcgccaaaggtataaattttggtcagataatcattcgtattgtgcacaactagtagcaccttatatttgtcgtt 127  Q
    ||||| ||||||||| | ||||||||||  |||||||||||| | ||||||||||||||||  ||||| ||||||| | |||||||| |||  |||| ||    
T  41681723 aatttagaatagtttcctaagaatcttcttcaaaggtataaagtatggtcagataatcattgttattgcgcacaacgactagcacctcataactgtcatt 41681822  T
Q  128 aacttgatcatagccaaagccataat 153  Q
    ||||||||||||||||||||||||||    
T  41681823 aacttgatcatagccaaagccataat 41681848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 76
Target Start/End: Complemental strand, 42694165 - 42694112
Alignment:
Q  23 tgggaaatttggaatagttttccaagaatcttcgccaaaggtataaattttggt 76  Q
    |||||||||||||| |||||||||||||| ||| ||||||||||||||| ||||    
T  42694165 tgggaaatttggaacagttttccaagaattttcaccaaaggtataaattctggt 42694112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 121 - 154
Target Start/End: Original strand, 45095803 - 45095836
Alignment:
Q  121 tgtcgttaacttgatcatagccaaagccataata 154  Q
    ||||||||||||||||||||||||||||||||||    
T  45095803 tgtcgttaacttgatcatagccaaagccataata 45095836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 149
Target Start/End: Original strand, 44669009 - 44669062
Alignment:
Q  96 tgcacaactagtagcaccttatatttgtcgttaacttgatcatagccaaagcca 149  Q
    |||||||||  ||| ||||| ||  |||||||||||||||||||||||||||||    
T  44669009 tgcacaactgctaggaccttgtacctgtcgttaacttgatcatagccaaagcca 44669062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 149
Target Start/End: Original strand, 44688285 - 44688338
Alignment:
Q  96 tgcacaactagtagcaccttatatttgtcgttaacttgatcatagccaaagcca 149  Q
    |||||||||  ||| ||||| ||  |||||||||||||||||||||||||||||    
T  44688285 tgcacaactgctaggaccttgtacctgtcgttaacttgatcatagccaaagcca 44688338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 24 - 71
Target Start/End: Complemental strand, 43908174 - 43908127
Alignment:
Q  24 gggaaatttggaatagttttccaagaatcttcgccaaaggtataaatt 71  Q
    ||||||||||||| || ||||||||||| ||| |||||||||||||||    
T  43908174 gggaaatttggaagagatttccaagaattttcaccaaaggtataaatt 43908127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 39 - 78
Target Start/End: Original strand, 43993934 - 43993973
Alignment:
Q  39 gttttccaagaatcttcgccaaaggtataaattttggtca 78  Q
    ||||||||||||| ||| ||||||||||||||||||||||    
T  43993934 gttttccaagaattttcaccaaaggtataaattttggtca 43993973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 150
Target Start/End: Original strand, 43986536 - 43986588
Alignment:
Q  98 cacaactagtagcaccttatatttgtcgttaacttgatcatagccaaagccat 150  Q
    |||||||| ||||||||| || |||||||||| ||| ||||||||||| ||||    
T  43986536 cacaactactagcaccttgtacttgtcgttaatttggtcatagccaaaaccat 43986588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 78
Target Start/End: Original strand, 20578413 - 20578467
Alignment:
Q  24 gggaaatttggaatagttttccaagaatcttcgccaaaggtataaattttggtca 78  Q
    |||||||||||||| |||||| ||||||  || ||||| ||||||||||||||||    
T  20578413 gggaaatttggaatggttttcaaagaattctcaccaaaagtataaattttggtca 20578467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University