View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15574_low_1 (Length: 782)
Name: NF15574_low_1
Description: NF15574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15574_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 17 - 421
Target Start/End: Original strand, 38709095 - 38709497
Alignment:
| Q |
17 |
agatatatagcagtaacacattgataatcaacacacatattgataattaaattaacggatatcaacaattaaaaacgaaagtagcacttaacannnnnnn |
116 |
Q |
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| T |
38709095 |
agatatatagcagtaacacattgataatcaacacacatattgataattaaattaacggatatcaacaattaaaaacgaaagtagcacttagcattttttt |
38709194 |
T |
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| Q |
117 |
n-ggcactcaagtagtactgaacatatattattttccattttccatgagaaaatacaaaatcctgggagtgacccatcatacaattattatcaggaaagt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38709195 |
ttggcactcaagtagtactgaacatatattattttccattttccatgagaaaatacaaaatcctgggagtgacccatcatacaattattatcaggaaagt |
38709294 |
T |
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| Q |
216 |
taaagctagctacgttcttagttctcaattattcattgtcatcatgcactcacccttgtatcattattaataggtgtagtagccatgtaaatattcacaa |
315 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
38709295 |
taaagctagctacgttcttagttctcaatt---cattgtcatcatgcactcacccttgtatcattattaataggtgtagtaaccatgtaaatattcacaa |
38709391 |
T |
|
| Q |
316 |
gagaacgatatctcctttgtttcttaactataggaaaaacttcaacatctttcccaaaaatctcttgtatcttggccattacaatatcatcactttgttg |
415 |
Q |
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| T |
38709392 |
gagaacgatatctcctttgtttcttaactataggaaaaacttcaacatctttcccaaaaatctcttgtatcttggccattacaatatcatcactttgttg |
38709491 |
T |
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| Q |
416 |
cttttt |
421 |
Q |
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|||||| |
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| T |
38709492 |
cttttt |
38709497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 81; Significance: 1e-37; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 552 - 640
Target Start/End: Original strand, 49125426 - 49125513
Alignment:
| Q |
552 |
ggatagacagagaaaattaatgtttattattatggtaaggtagaggtgcaagcgcccgacaaacatgtgaattgctgtaaacaataact |
640 |
Q |
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| T |
49125426 |
ggatagacagagaaaattaatgtt-attattatggtaaggtagaggtgcaagcgcccgacaaacatgtgaattgctgtaaacaataact |
49125513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 700 - 766
Target Start/End: Original strand, 49125573 - 49125639
Alignment:
| Q |
700 |
gttaaaggtactgatgcatgggtcagctcatcagaagaaagaaaaggaaaagacaggaagttgttgc |
766 |
Q |
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| T |
49125573 |
gttaaaggtactgatgcatgggtcagctcatcagaagaaagaaaaggaaaagacaggaagttgttgc |
49125639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 443 - 492
Target Start/End: Original strand, 49125329 - 49125378
Alignment:
| Q |
443 |
agcttcccttatataacaatgattcaaaataagagttgtttatcaactct |
492 |
Q |
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| T |
49125329 |
agctttccttatataacaatgattcaaaataagagttgtttatcaactct |
49125378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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