View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15574_low_14 (Length: 244)
Name: NF15574_low_14
Description: NF15574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15574_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 8 - 226
Target Start/End: Original strand, 34416838 - 34417054
Alignment:
| Q |
8 |
cagcacagacatatttacatccctgattttatagttctattgctaccatttatgtctcatgatatttattgctagagtctagagtttgttgcatatggtt |
107 |
Q |
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| T |
34416838 |
cagcgcagacatatttacatccctgattttatagttctattgctaccatttatgtctcatgatatttattgctatagtctagagtttgttgcatatggtt |
34416937 |
T |
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| Q |
108 |
cttaataattgaatttgttttttcatgtttgtaactaaggcgtaagccttgcgtacaatatcagttaatgcgcaggatgtgtgcctttagataaatcttg |
207 |
Q |
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| T |
34416938 |
cttaataattgaatttgttttttcatgtttgtaactaag--gtaagccttgcgtacaatatcagttaatgcgcaggatgtgtgcctttagataaatcttg |
34417035 |
T |
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| Q |
208 |
tgtaaatttggtactgtta |
226 |
Q |
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||||||||||||||||||| |
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| T |
34417036 |
tgtaaatttggtactgtta |
34417054 |
T |
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