View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15574_low_17 (Length: 222)

Name: NF15574_low_17
Description: NF15574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15574_low_17
NF15574_low_17
[»] chr4 (35 HSPs)
chr4 (50-203)||(44925114-44925267)
chr4 (53-138)||(56215604-56215689)
chr4 (50-137)||(35748648-35748735)
chr4 (54-137)||(35206168-35206251)
chr4 (50-113)||(45652665-45652728)
chr4 (50-133)||(54222041-54222124)
chr4 (50-137)||(31092490-31092576)
chr4 (98-140)||(149517-149559)
chr4 (50-134)||(13140287-13140369)
chr4 (50-115)||(29963630-29963695)
chr4 (98-137)||(2738300-2738339)
chr4 (50-137)||(10762486-10762573)
chr4 (55-113)||(40293264-40293320)
chr4 (50-89)||(44121212-44121251)
chr4 (98-140)||(14443195-14443237)
chr4 (99-137)||(54000698-54000736)
chr4 (56-137)||(12593602-12593683)
chr4 (51-84)||(32058360-32058393)
chr4 (54-137)||(56474751-56474835)
chr4 (50-137)||(961276-961363)
chr4 (98-137)||(5932796-5932835)
chr4 (98-137)||(7632494-7632533)
chr4 (98-137)||(29227275-29227314)
chr4 (99-138)||(29384230-29384269)
chr4 (98-137)||(39158105-39158144)
chr4 (98-136)||(21014055-21014093)
chr4 (98-140)||(32012893-32012935)
chr4 (50-136)||(32871813-32871899)
chr4 (54-136)||(40760074-40760156)
chr4 (72-137)||(35824113-35824177)
chr4 (104-137)||(42915257-42915290)
chr4 (50-138)||(52379021-52379107)
chr4 (53-89)||(1015025-1015061)
chr4 (52-140)||(3078894-3078982)
chr4 (98-134)||(38519796-38519832)
[»] chr2 (35 HSPs)
chr2 (53-137)||(13453942-13454026)
chr2 (50-140)||(31629601-31629691)
chr2 (50-137)||(9979096-9979183)
chr2 (51-137)||(22966786-22966872)
chr2 (50-137)||(28481781-28481866)
chr2 (53-137)||(43820728-43820812)
chr2 (50-137)||(29472015-29472101)
chr2 (56-137)||(31227542-31227621)
chr2 (63-139)||(15123933-15124009)
chr2 (50-137)||(40106609-40106696)
chr2 (98-140)||(11965790-11965832)
chr2 (52-138)||(25507254-25507342)
chr2 (50-138)||(30416359-30416450)
chr2 (50-138)||(28544030-28544118)
chr2 (100-139)||(10216862-10216901)
chr2 (62-137)||(24727586-24727661)
chr2 (50-137)||(31415199-31415286)
chr2 (51-113)||(9432200-9432261)
chr2 (51-84)||(18423746-18423779)
chr2 (50-138)||(30413426-30413514)
chr2 (62-137)||(38821366-38821442)
chr2 (54-113)||(15610820-15610879)
chr2 (98-137)||(37731232-37731271)
chr2 (50-138)||(45376201-45376293)
chr2 (99-137)||(1352388-1352426)
chr2 (98-140)||(7664101-7664143)
chr2 (104-134)||(36417447-36417477)
chr2 (99-137)||(36587501-36587539)
chr2 (104-137)||(19695718-19695751)
chr2 (98-139)||(31922325-31922366)
chr2 (57-138)||(40874252-40874333)
chr2 (50-137)||(10749663-10749750)
chr2 (98-138)||(15260306-15260346)
chr2 (98-138)||(22888854-22888893)
chr2 (104-136)||(39285854-39285886)
[»] chr8 (29 HSPs)
chr8 (50-137)||(30170713-30170800)
chr8 (50-131)||(14127250-14127331)
chr8 (63-137)||(26629107-26629181)
chr8 (53-137)||(43066581-43066665)
chr8 (50-133)||(37379418-37379501)
chr8 (52-137)||(33605063-33605149)
chr8 (58-139)||(8835862-8835943)
chr8 (50-138)||(4721728-4721816)
chr8 (50-138)||(28434441-28434529)
chr8 (53-139)||(21467382-21467466)
chr8 (50-84)||(16585376-16585410)
chr8 (71-140)||(26026893-26026962)
chr8 (71-140)||(34018805-34018874)
chr8 (99-140)||(41406889-41406930)
chr8 (98-137)||(1068606-1068645)
chr8 (98-137)||(2730993-2731032)
chr8 (58-137)||(13592766-13592845)
chr8 (98-137)||(28772156-28772195)
chr8 (98-137)||(34435769-34435808)
chr8 (50-84)||(26509487-26509521)
chr8 (99-137)||(33107900-33107938)
chr8 (98-139)||(5601019-5601060)
chr8 (98-139)||(5639560-5639601)
chr8 (100-137)||(7010685-7010722)
chr8 (104-140)||(9047097-9047133)
chr8 (99-139)||(10553116-10553156)
chr8 (98-138)||(14707376-14707416)
chr8 (99-139)||(26871044-26871084)
chr8 (98-138)||(35153014-35153054)
[»] chr7 (26 HSPs)
chr7 (50-138)||(6892617-6892705)
chr7 (53-132)||(24957178-24957257)
chr7 (50-141)||(42663399-42663490)
chr7 (50-137)||(48395248-48395335)
chr7 (50-139)||(47925335-47925424)
chr7 (52-136)||(17909036-17909120)
chr7 (51-111)||(27306010-27306070)
chr7 (51-137)||(8352774-8352860)
chr7 (54-140)||(48314349-48314435)
chr7 (98-139)||(34978294-34978335)
chr7 (50-132)||(22588945-22589027)
chr7 (50-138)||(6427209-6427302)
chr7 (50-89)||(7212647-7212686)
chr7 (50-134)||(11503561-11503641)
chr7 (52-113)||(34820634-34820695)
chr7 (94-138)||(7714821-7714865)
chr7 (50-142)||(45256715-45256807)
chr7 (98-137)||(2008890-2008929)
chr7 (98-137)||(37352110-37352149)
chr7 (52-134)||(23816284-23816366)
chr7 (99-137)||(44649359-44649397)
chr7 (51-84)||(11813398-11813431)
chr7 (98-143)||(12007218-12007263)
chr7 (99-139)||(32777740-32777780)
chr7 (62-137)||(47448826-47448902)
chr7 (98-138)||(49069248-49069288)
[»] chr5 (20 HSPs)
chr5 (51-139)||(15004709-15004797)
chr5 (55-139)||(8681841-8681923)
chr5 (50-137)||(30838349-30838436)
chr5 (50-137)||(43057435-43057522)
chr5 (54-138)||(26754626-26754710)
chr5 (50-137)||(844036-844120)
chr5 (51-137)||(2629818-2629906)
chr5 (52-138)||(8728565-8728653)
chr5 (51-137)||(4800483-4800573)
chr5 (54-138)||(41621916-41622000)
chr5 (98-135)||(39195719-39195756)
chr5 (51-139)||(15022222-15022315)
chr5 (98-137)||(611864-611903)
chr5 (54-89)||(19645608-19645643)
chr5 (50-140)||(35570810-35570901)
chr5 (98-140)||(21155984-21156026)
chr5 (104-137)||(35075614-35075647)
chr5 (99-135)||(54705-54741)
chr5 (99-139)||(17063863-17063903)
chr5 (104-140)||(21210827-21210863)
[»] scaffold1625 (1 HSPs)
scaffold1625 (50-133)||(765-848)
[»] chr6 (25 HSPs)
chr6 (50-133)||(10840722-10840805)
chr6 (50-134)||(13093629-13093715)
chr6 (50-135)||(38598-38683)
chr6 (54-134)||(20029264-20029344)
chr6 (98-140)||(18065122-18065164)
chr6 (50-121)||(26554589-26554661)
chr6 (98-137)||(2242054-2242093)
chr6 (50-113)||(33683524-33683587)
chr6 (98-140)||(33712317-33712359)
chr6 (51-89)||(34019914-34019952)
chr6 (98-139)||(11635567-11635608)
chr6 (51-138)||(6256434-6256518)
chr6 (76-140)||(34383868-34383932)
chr6 (98-137)||(8505806-8505845)
chr6 (98-140)||(14910174-14910216)
chr6 (99-137)||(16337103-16337141)
chr6 (71-137)||(17551384-17551450)
chr6 (104-137)||(1196058-1196091)
chr6 (99-140)||(12500060-12500101)
chr6 (99-140)||(12507389-12507430)
chr6 (99-140)||(12508800-12508841)
chr6 (56-89)||(25109091-25109124)
chr6 (104-140)||(1286920-1286956)
chr6 (104-140)||(7611492-7611528)
chr6 (53-137)||(31204797-31204881)
[»] chr3 (20 HSPs)
chr3 (50-137)||(9326969-9327056)
chr3 (56-137)||(31143270-31143351)
chr3 (52-137)||(19623238-19623323)
chr3 (52-121)||(6976946-6977015)
chr3 (53-136)||(3282534-3282616)
chr3 (52-138)||(39284655-39284739)
chr3 (50-137)||(39901591-39901677)
chr3 (53-135)||(41850945-41851027)
chr3 (51-133)||(47187505-47187587)
chr3 (50-134)||(11323912-11323994)
chr3 (50-137)||(41448163-41448247)
chr3 (100-139)||(9719475-9719514)
chr3 (98-137)||(19961932-19961971)
chr3 (98-137)||(41443223-41443262)
chr3 (100-138)||(9753229-9753267)
chr3 (50-84)||(32622350-32622384)
chr3 (50-138)||(46574149-46574236)
chr3 (104-141)||(24256798-24256834)
chr3 (98-138)||(33389007-33389047)
chr3 (50-82)||(46092943-46092975)
[»] chr1 (20 HSPs)
chr1 (50-136)||(1922409-1922495)
chr1 (53-137)||(35883594-35883678)
chr1 (50-139)||(28501445-28501534)
chr1 (50-115)||(49804919-49804984)
chr1 (98-138)||(5771780-5771820)
chr1 (98-137)||(26159441-26159480)
chr1 (104-137)||(4857922-4857955)
chr1 (50-118)||(2279306-2279374)
chr1 (50-134)||(51231290-51231374)
chr1 (98-137)||(27742617-27742656)
chr1 (98-137)||(48858823-48858862)
chr1 (54-84)||(3904237-3904267)
chr1 (100-138)||(37690428-37690466)
chr1 (100-137)||(8828156-8828192)
chr1 (98-139)||(19947773-19947814)
chr1 (71-144)||(36577417-36577490)
chr1 (100-137)||(47398474-47398511)
chr1 (107-139)||(2362354-2362386)
chr1 (71-139)||(3672339-3672406)
chr1 (71-139)||(35136842-35136910)
[»] scaffold0178 (1 HSPs)
scaffold0178 (52-113)||(11539-11600)
[»] scaffold0201 (1 HSPs)
scaffold0201 (99-140)||(8469-8510)
[»] scaffold0009 (1 HSPs)
scaffold0009 (51-137)||(49337-49424)


Alignment Details
Target: chr4 (Bit Score: 114; Significance: 6e-58; HSPs: 35)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 50 - 203
Target Start/End: Original strand, 44925114 - 44925267
Alignment:
Q  50 gaagagagagaataaaaacacatgtgagtatgagaaagaggatcgttccaaaaattgtcaaaaagtgattgttcaaatatcatttctcatagttttaggt 149  Q
    ||||| || ||||||||||||||||||| |||| ||||||| |||||| |||| ||||||||||||| ||||||||||||||||||||||| ||||||||    
T  44925114 gaagaaagggaataaaaacacatgtgagaatgaaaaagagggtcgttctaaaagttgtcaaaaagtggttgttcaaatatcatttctcataattttaggt 44925213  T
Q  150 gtaaatagtttaaaattacacatttcagaaaccatggcaaaggagacctccatt 203  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  44925214 gtaaatagtttaaaattacacatttcagaaaccatggtaaaggagacctccatt 44925267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 53 - 138
Target Start/End: Complemental strand, 56215689 - 56215604
Alignment:
Q  53 gagagagaataaaaacacatgtgagtatgagaaagaggatcgttccaaaaattgtcaaaaagtgattgttcaaatatcatttctca 138  Q
    |||||||||||||||||||||||||||||||| ||| ||| | | ||||| ||||||||||||| |||| ||||||||||||||||    
T  56215689 gagagagaataaaaacacatgtgagtatgagagagatgattggttcaaaagttgtcaaaaagtggttgtacaaatatcatttctca 56215604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 50 - 137
Target Start/End: Original strand, 35748648 - 35748735
Alignment:
Q  50 gaagagagagaataaaaacacatgtgagtatgagaaagaggatcgttccaaaaattgtcaaaaagtgattgttcaaatatcatttctc 137  Q
    ||||||||||||||||||||||| ||||||||||| | | ||| |||||||||||| |||||||||  |||| |||||| ||||||||    
T  35748648 gaagagagagaataaaaacacatctgagtatgagagatatgattgttccaaaaattatcaaaaagtagttgtgcaaataacatttctc 35748735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 54 - 137
Target Start/End: Complemental strand, 35206251 - 35206168
Alignment:
Q  54 agagagaataaaaacacatgtgagtatgagaaagaggatcgttccaaaaattgtcaaaaagtgattgttcaaatatcatttctc 137  Q
    ||||||||||||||||||||||||||| ||| ||||  | ||| ||||| || ||||||||||||||| |||| ||||||||||    
T  35206251 agagagaataaaaacacatgtgagtataagagagagagttgtttcaaaagttatcaaaaagtgattgtacaaacatcatttctc 35206168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 50 - 113
Target Start/End: Complemental strand, 45652728 - 45652665
Alignment:
Q  50 gaagagagagaataaaaacacatgtgagtatgagaaagaggatcgttccaaaaattgtcaaaaa 113  Q
    ||||||||||||||||||||||||||||||||||| ||||| | ||| ||||| ||||||||||    
T  45652728 gaagagagagaataaaaacacatgtgagtatgagatagaggtttgtttcaaaagttgtcaaaaa 45652665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 50 - 133
Target Start/End: Original strand, 54222041 - 54222124
Alignment:
Q  50 gaagagagagaataaaaacacatgtgagtatgagaaagaggatcgttccaaaaattgtcaaaaagtgattgttcaaatatcatt 133  Q
    |||||| |||||||||| ||||||||||||||||| | | ||| ||||||||| |||| |||||||| |||| |||||||||||    
T  54222041 gaagagggagaataaaagcacatgtgagtatgagagacatgattgttccaaaagttgttaaaaagtggttgtacaaatatcatt 54222124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 50 - 137
Target Start/End: Original strand, 31092490 - 31092576
Alignment:
Q  50 gaagagagagaataaaaacacatgtgagtatgagaaagaggatcgttccaaaaattgtcaaaaagtgattgttcaaatatcatttctc 137  Q
    |||| ||||||||||||||||||||||||||| || | | | ||||||||||| ||||| ||||||| |||| ||||||| |||||||    
T  31092490 gaagtgagagaataaaaacacatgtgagtatgggagatatggtcgttccaaaagttgtc-aaaagtggttgtacaaatataatttctc 31092576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 98 - 140
Target Start/End: Original strand, 149517 - 149559
Alignment:
Q  98 caaaaattgtcaaaaagtgattgttcaaatatcatttctcata 140  Q
    |||||||| ||||||||||||||||||||||||||||||||||    
T  149517 caaaaattatcaaaaagtgattgttcaaatatcatttctcata 149559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 50 - 134
Target Start/End: Original strand, 13140287 - 13140369
Alignment:
Q  50 gaagagagagaataaaaacacatgtgagtatgagaaagaggatcgttccaaaaattgtcaaaaagtgattgttcaaatatcattt 134  Q
    ||||||||||||||||||||||||||||||||||| ||||  | ||| ||||| |||||||||| |   ||| ||||||||||||    
T  13140287 gaagagagagaataaaaacacatgtgagtatgagagagag--ttgtttcaaaagttgtcaaaaaatagatgtacaaatatcattt 13140369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 50 - 115
Target Start/End: Complemental strand, 29963695 - 29963630
Alignment:
Q  50 gaagagagagaataaaaacacatgtgagtatgagaaagaggatcgttccaaaaattgtcaaaaagt 115  Q
    |||||||||||||||||||| |||||||||| ||| ||| ||| ||| ||||| ||||||||||||    
T  29963695 gaagagagagaataaaaacaaatgtgagtataagagagatgattgtttcaaaagttgtcaaaaagt 29963630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 98 - 137
Target Start/End: Original strand, 2738300 - 2738339
Alignment:
Q  98 caaaaattgtcaaaaagtgattgttcaaatatcatttctc 137  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  2738300 caaaaattgtcaaaaaatgattgttcaaatatcatttctc 2738339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 137
Target Start/End: Original strand, 10762486 - 10762573
Alignment:
Q  50 gaagagagagaataaaaacacatgtgagtatgagaaagaggatcgttccaaaaattgtcaaaaagtgattgttcaaatatcatttctc 137  Q
    |||||||||||||||||||| |||||||||| | | |||| || ||| ||||| || |||||||||  ||||  ||||||||||||||    
T  10762486 gaagagagagaataaaaacatatgtgagtataaaagagagaattgtttcaaaagttatcaaaaagtagttgtataaatatcatttctc 10762573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 113
Target Start/End: Complemental strand, 40293320 - 40293264
Alignment:
Q  55 gagagaataaaaacacatgtgagtatgagaaagaggatcgttccaaaaattgtcaaaaa 113  Q
    |||||||||||||||||||||||||||||  ||||| | ||| ||||||||||||||||    
T  40293320 gagagaataaaaacacatgtgagtatgag--agagggttgtttcaaaaattgtcaaaaa 40293264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 89
Target Start/End: Original strand, 44121212 - 44121251
Alignment:
Q  50 gaagagagagaataaaaacacatgtgagtatgagaaagag 89  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  44121212 gaagagagagaataaaaacacatgtgagtatgagagagag 44121251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 98 - 140
Target Start/End: Complemental strand, 14443237 - 14443195
Alignment:
Q  98 caaaaattgtcaaaaagtgattgttcaaatatcatttctcata 140  Q
    ||||| |||||||||| ||||||||||||||||||||||||||    
T  14443237 caaaagttgtcaaaaaatgattgttcaaatatcatttctcata 14443195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 99 - 137
Target Start/End: Complemental strand, 54000736 - 54000698
Alignment:
Q  99 aaaaattgtcaaaaagtgattgttcaaatatcatttctc 137  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  54000736 aaaaattgtcaaaaagtggttgttcaaatatcatttctc 54000698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 137
Target Start/End: Original strand, 12593602 - 12593683
Alignment:
Q  56 agagaataaaaacacatgtgagtatgagaaagaggatcgttccaaaaattgtcaaaaagtgattgttcaaatatcatttctc 137  Q
    ||||||||||||||||||| ||||||||| | | |||  || |||||||||||||||| | ||| |  ||||||||||||||    
T  12593602 agagaataaaaacacatgtaagtatgagagaaatgattatttcaaaaattgtcaaaaaataattatataaatatcatttctc 12593683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 51 - 84
Target Start/End: Original strand, 32058360 - 32058393
Alignment:
Q  51 aagagagagaataaaaacacatgtgagtatgaga 84  Q
    ||||||||||||||||||||||||||||||||||    
T  32058360 aagagagagaataaaaacacatgtgagtatgaga 32058393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 137
Target Start/End: Original strand, 56474751 - 56474835
Alignment:
Q  54 agagagaataaaaacaca-tgtgagtatgagaaagaggatcgttccaaaaattgtcaaaaagtgattgttcaaatatcatttctc 137  Q
    ||||||| |||||||| | ||||||||| ||| |||  || ||  |||||||||| ||||| |||||||||||||||||||||||    
T  56474751 agagagagtaaaaacataatgtgagtataagagagaaaattgtcacaaaaattgtaaaaaaatgattgttcaaatatcatttctc 56474835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 137
Target Start/End: Complemental strand, 961363 - 961276
Alignment:
Q  50 gaagagagagaataaaaacacatgtgagtatgagaaagaggatcgttccaaaaattgtcaaaaagtgattgttcaaatatcatttctc 137  Q
    ||||||||| ||| |||| |||||||||||||||| ||||  | ||| ||||| || ||||||| | ||||| ||||||| |||||||    
T  961363 gaagagagataatgaaaaaacatgtgagtatgagagagagagttgtttcaaaagttatcaaaaaattattgtacaaatattatttctc 961276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 137
Target Start/End: Original strand, 5932796 - 5932835
Alignment:
Q  98 caaaaattgtcaaaaagtgattgttcaaatatcatttctc 137  Q
    ||||| ||||||||||||| ||||||||||||||||||||    
T  5932796 caaaagttgtcaaaaagtggttgttcaaatatcatttctc 5932835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 137
Target Start/End: Original strand, 7632494 - 7632533
Alignment:
Q  98 caaaaattgtcaaaaagtgattgttcaaatatcatttctc 137  Q
    ||||| |||||||||| |||||||||||||||||||||||    
T  7632494 caaaagttgtcaaaaattgattgttcaaatatcatttctc 7632533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 137
Target Start/End: Original strand, 29227275 - 29227314
Alignment:
Q  98 caaaaattgtcaaaaagtgattgttcaaatatcatttctc 137  Q
    |||||||| |||||||||| ||||||||||||||||||||    
T  29227275 caaaaattatcaaaaagtggttgttcaaatatcatttctc 29227314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 138
Target Start/End: Original strand, 29384230 - 29384269
Alignment:
Q  99 aaaaattgtcaaaaagtgattgttcaaatatcatttctca 138  Q
    ||||||||||| ||||||||||| ||||||||||||||||    
T  29384230 aaaaattgtcataaagtgattgtacaaatatcatttctca 29384269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 137
Target Start/End: Complemental strand, 39158144 - 39158105
Alignment:
Q  98 caaaaattgtcaaaaagtgattgttcaaatatcatttctc 137  Q
    |||||||| ||||||| |||||||||||||||||||||||    
T  39158144 caaaaattatcaaaaaatgattgttcaaatatcatttctc 39158105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 136
Target Start/End: Complemental strand, 21014093 - 21014055
Alignment:
Q  98 caaaaattgtcaaaaagtgattgttcaaatatcatttct 136  Q
    ||||| |||||||||| ||||||||||||||||||||||    
T  21014093 caaaagttgtcaaaaaatgattgttcaaatatcatttct 21014055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 140
Target Start/End: Complemental strand, 32012935 - 32012893
Alignment:
Q  98 caaaaattgtcaaaaagtgattgttcaaatatcatttctcata 140  Q
    ||||| |||||||||| || |||||||||||||||||||||||    
T  32012935 caaaagttgtcaaaaattggttgttcaaatatcatttctcata 32012893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 136
Target Start/End: Original strand, 32871813 - 32871899
Alignment:
Q  50 gaagagagagaataaaaacacatgtgagtatgagaaagaggatcgttccaaaaattgtcaaaaagtgattgttcaaatatcatttct 136  Q
    |||||||||||||||||  |||||||| ||||||| ||| ||| ||| ||||| ||||||| || |  | || ||||||||||||||    
T  32871813 gaagagagagaataaaactacatgtgaatatgagagagatgattgtttcaaaagttgtcaagaaatagtggtacaaatatcatttct 32871899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 136
Target Start/End: Complemental strand, 40760156 - 40760074
Alignment:
Q  54 agagagaataaaaacacatgtgagtatgagaaagaggatcgttccaaaaattgtcaaaaagtgattgttcaaatatcatttct 136  Q
    |||||||||||||||| |||| | ||| |||  |||||| ||| ||||| ||||||||||  |||||||||| ||| ||||||    
T  40760156 agagagaataaaaacaaatgtaaatataagattgaggattgtttcaaaagttgtcaaaaatagattgttcaagtattatttct 40760074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 72 - 137
Target Start/End: Original strand, 35824113 - 35824177
Alignment:
Q  72 tgtgagtatgagaaagaggatcgttccaaaaattgtcaaaaagtgattgttcaaatatcatttctc 137  Q
    ||||||||||||||||| ||| || |||||| |||| ||||| || |||| |||||||||||||||    
T  35824113 tgtgagtatgagaaagaagattgt-ccaaaagttgttaaaaaatggttgtacaaatatcatttctc 35824177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 104 - 137
Target Start/End: Original strand, 42915257 - 42915290
Alignment:
Q  104 ttgtcaaaaagtgattgttcaaatatcatttctc 137  Q
    |||||||||||||||||| |||||||||||||||    
T  42915257 ttgtcaaaaagtgattgtacaaatatcatttctc 42915290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 50 - 138
Target Start/End: Original strand, 52379021 - 52379107
Alignment:
Q  50 gaagagagagaataaaaacacatgtgagtatgagaaagaggatcgttccaaaaattgtcaaaaagtgattgttcaaatatcatttctca 138  Q
    |||||||||||||||||| ||||||||| || ||| ||||  | ||  |||||||| | ||||||||  ||| ||||||||||||||||    
T  52379021 gaagagagagaataaaaatacatgtgagcataagagagag--ttgtcacaaaaattattaaaaagtggatgtacaaatatcatttctca 52379107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 89
Target Start/End: Complemental strand, 1015061 - 1015025
Alignment:
Q  53 gagagagaataaaaacacatgtgagtatgagaaagag 89  Q
    ||||||||||| |||||||||||||||||||| ||||    
T  1015061 gagagagaatataaacacatgtgagtatgagagagag 1015025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 140
Target Start/End: Original strand, 3078894 - 3078982
Alignment:
Q  52 agagagagaataaaaacacatgtgagtatgagaaagaggatcgttccaaaaattgtcaaaaagtgattgttcaaatatcatttctcata 140  Q
    ||||| ||| |||||||| |||||||||||||| |||   | ||  ||||| |||| | ||| ||||||| ||||||||||||||||||    
T  3078894 agagatagagtaaaaacatatgtgagtatgagagagaaagttgtcacaaaagttgttacaaaatgattgtacaaatatcatttctcata 3078982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 134
Target Start/End: Complemental strand, 38519832 - 38519796
Alignment:
Q  98 caaaaattgtcaaaaagtgattgttcaaatatcattt 134  Q
    |||||||||||||||| || |||||||||||||||||    
T  38519832 caaaaattgtcaaaaaatggttgttcaaatatcattt 38519796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 6e-24; HSPs: 35)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 53 - 137
Target Start/End: Original strand, 13453942 - 13454026
Alignment:
Q  53 gagagagaataaaaacacatgtgagtatgagaaagaggatcgttccaaaaattgtcaaaaagtgattgttcaaatatcatttctc 137  Q
    |||||||||||||||||||||||||||||||| |||| || ||| ||||| |||||||||||||||||| || ||||||||||||    
T  13453942 gagagagaataaaaacacatgtgagtatgagagagagaattgtttcaaaagttgtcaaaaagtgattgtacagatatcatttctc 13454026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 50 - 140
Target Start/End: Complemental strand, 31629691 - 31629601
Alignment:
Q  50 gaagagagagaataaaaacacatgtgagtatgagaaagaggatcgttccaaaaattgtcaaaaagtgattgttcaaatatcatttctcata 140  Q
    ||||||||||||||||||||||||||||||| ||| ||| | | ||||||||| ||||||||||||  |||| ||||||||||||||||||    
T  31629691 gaagagagagaataaaaacacatgtgagtattagagagatggttgttccaaaagttgtcaaaaagtagttgtacaaatatcatttctcata 31629601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 50 - 137
Target Start/End: Complemental strand, 9979183 - 9979096
Alignment:
Q  50 gaagagagagaataaaaacacatgtgagtatgagaaagaggatcgttccaaaaattgtcaaaaagtgattgttcaaatatcatttctc 137  Q
    ||||||||||||||||||||||||||||||||||| ||| | | ||  |||||||||| |||||||| |||| |||||||||||||||    
T  9979183 gaagagagagaataaaaacacatgtgagtatgagagagatggttgtcacaaaaattgtgaaaaagtggttgtacaaatatcatttctc 9979096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 51 - 137
Target Start/End: Complemental strand, 22966872 - 22966786
Alignment:
Q  51 aagagagagaataaaaacacatgtgagtatgagaaagaggatcgttccaaaaattgtcaaaaagtgattgttcaaatatcatttctc 137  Q
    |||||||||||||||||||||||||| ||||||| ||||| | ||| ||||| || |||||||||| |||| |||||||||||||||    
T  22966872 aagagagagaataaaaacacatgtgaatatgagagagagggttgtttcaaaagttatcaaaaagtggttgtacaaatatcatttctc 22966786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 50 - 137
Target Start/End: Complemental strand, 28481866 - 28481781
Alignment:
Q  50 gaagagagagaataaaaacacatgtgagtatgagaaagaggatcgttccaaaaattgtcaaaaagtgattgttcaaatatcatttctc 137  Q
    ||||||| ||||||||||||||||||||||||||| ||||  | ||||||||| |||||||||| || |||||||||||| |||||||    
T  28481866 gaagagatagaataaaaacacatgtgagtatgagagagag--ttgttccaaaagttgtcaaaaaatggttgttcaaatattatttctc 28481781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 53 - 137
Target Start/End: Original strand, 43820728 - 43820812
Alignment:
Q  53 gagagagaataaaaacacatgtgagtatgagaaagaggatcgttccaaaaattgtcaaaaagtgattgttcaaatatcatttctc 137  Q
    ||||||||||||||| | |||||||||||||||||| | | ||| ||||| |||| ||||| ||||||| |||||||||||||||    
T  43820728 gagagagaataaaaaaatatgtgagtatgagaaagatggttgtttcaaaagttgtaaaaaaatgattgtacaaatatcatttctc 43820812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 50 - 137
Target Start/End: Original strand, 29472015 - 29472101
Alignment:
Q  50 gaagagagagaataaaaacacatgtgagtatgagaaagaggatcgttccaaaaattgtcaaaaagtgattgttcaaatatcatttctc 137  Q
    ||||| ||||||||||||||||||||||||||||| || || | ||| ||||| ||||| |||||||||| | |||||||||||||||    
T  29472015 gaagatagagaataaaaacacatgtgagtatgagagagggggttgtttcaaaagttgtc-aaaagtgattttacaaatatcatttctc 29472101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 56 - 137
Target Start/End: Original strand, 31227542 - 31227621
Alignment:
Q  56 agagaataaaaacacatgtgagtatgagaaagaggatcgttccaaaaattgtcaaaaagtgattgttcaaatatcatttctc 137  Q
    |||||||||||| |||||||||||||||| ||||  | ||| ||||| |||||||||||||||||| || ||||||||||||    
T  31227542 agagaataaaaaaacatgtgagtatgagagagag--ttgtttcaaaagttgtcaaaaagtgattgtacacatatcatttctc 31227621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 63 - 139
Target Start/End: Original strand, 15123933 - 15124009
Alignment:
Q  63 aaaaacacatgtgagtatgagaaagaggatcgttccaaaaattgtcaaaaagtgattgttcaaatatcatttctcat 139  Q
    |||||||||||||||||||||| | | ||| ||| ||||| |||||||||| || |||| |||||||||||||||||    
T  15123933 aaaaacacatgtgagtatgagagatatgattgtttcaaaagttgtcaaaaaatggttgtacaaatatcatttctcat 15124009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 50 - 137
Target Start/End: Complemental strand, 40106696 - 40106609
Alignment:
Q  50 gaagagagagaataaaaacacatgtgagtatgagaaagaggatcgttccaaaaattgtcaaaaagtgattgttcaaatatcatttctc 137  Q
    ||||||||||||||||||| ||||| ||||||||| ||| | | ||| || || |||||||| |||| |||| |||||||||||||||    
T  40106696 gaagagagagaataaaaacgcatgtaagtatgagagagatggttgtttcataagttgtcaaagagtggttgtacaaatatcatttctc 40106609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 98 - 140
Target Start/End: Complemental strand, 11965832 - 11965790
Alignment:
Q  98 caaaaattgtcaaaaagtgattgttcaaatatcatttctcata 140  Q
    ||||| |||||||||||||||||||||||||||||||||||||    
T  11965832 caaaagttgtcaaaaagtgattgttcaaatatcatttctcata 11965790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 52 - 138
Target Start/End: Complemental strand, 25507342 - 25507254
Alignment:
Q  52 agagagagaataaaaacacatgtgagtatgagaaagag--gatcgttccaaaaattgtcaaaaagtgattgttcaaatatcatttctca 138  Q
    |||||||||||||||  ||||||||||| |||| ||||  | | ||| ||||| ||||||||||||| |||| ||||||||||||||||    
T  25507342 agagagagaataaaattacatgtgagtacgagagagagagggttgtttcaaaagttgtcaaaaagtggttgtacaaatatcatttctca 25507254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 50 - 138
Target Start/End: Complemental strand, 30416450 - 30416359
Alignment:
Q  50 gaagagagagaataaaaacacatgtgagtatgagaaagaggatcg---ttccaaaaattgtcaaaaagtgattgttcaaatatcatttctca 138  Q
    ||||| ||||||||||||||||| | ||| ||||| |||||||     || |||||||||||||||| ||||||| ||||||||||||||||    
T  30416450 gaagaaagagaataaaaacacatattagtctgagatagaggatttctttttcaaaaattgtcaaaaaatgattgtacaaatatcatttctca 30416359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 50 - 138
Target Start/End: Complemental strand, 28544118 - 28544030
Alignment:
Q  50 gaagagagagaataaaaacacatgtgagtatgagaaagaggatcgttccaaaaattgtcaaaaagtgattgttcaaatatcatttctca 138  Q
    |||||||||||||||||||||||||||| |||||| ||| | | ||  ||||| |||| ||||| || | || ||||||||||||||||    
T  28544118 gaagagagagaataaaaacacatgtgagaatgagagagatggttgtcacaaaagttgtgaaaaaatggtagtacaaatatcatttctca 28544030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 139
Target Start/End: Complemental strand, 10216901 - 10216862
Alignment:
Q  100 aaaattgtcaaaaagtgattgttcaaatatcatttctcat 139  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  10216901 aaaattgtcaaaaagtgattgtacaaatatcatttctcat 10216862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 62 - 137
Target Start/End: Original strand, 24727586 - 24727661
Alignment:
Q  62 taaaaacacatgtgagtatgagaaagaggatcgttccaaaaattgtcaaaaagtgattgttcaaatatcatttctc 137  Q
    |||||||| |||||| ||||||| ||||  | ||| ||||| ||||||||||||| |||| |||||||||||||||    
T  24727586 taaaaacatatgtgaatatgagagagagtgttgtttcaaaagttgtcaaaaagtggttgtacaaatatcatttctc 24727661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 137
Target Start/End: Original strand, 31415199 - 31415286
Alignment:
Q  50 gaagagagagaataaaaacacatgtgagtatgagaaagaggatcgttccaaaaattgtcaaaaagtgattgttcaaatatcatttctc 137  Q
    ||||||||| |||||||||||| |||||||| ||||| | | | ||| ||||| |||||||||||| |  || |||||||||||||||    
T  31415199 gaagagagacaataaaaacacaagtgagtataagaaatatggttgtttcaaaagttgtcaaaaagtaaacgtacaaatatcatttctc 31415286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 51 - 113
Target Start/End: Original strand, 9432200 - 9432261
Alignment:
Q  51 aagagagagaataaaaacacatgtgagtatgagaaagaggatcgttccaaaaattgtcaaaaa 113  Q
    ||||||||||||||||| |||||||||||||||||||| ||| |||  |||| ||||||||||    
T  9432200 aagagagagaataaaaa-acatgtgagtatgagaaagatgattgtttaaaaagttgtcaaaaa 9432261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 51 - 84
Target Start/End: Original strand, 18423746 - 18423779
Alignment:
Q  51 aagagagagaataaaaacacatgtgagtatgaga 84  Q
    ||||||||||||||||||||||||||||||||||    
T  18423746 aagagagagaataaaaacacatgtgagtatgaga 18423779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 138
Target Start/End: Complemental strand, 30413514 - 30413426
Alignment:
Q  50 gaagagagagaataaaaacacatgtgagtatgagaaagaggatcgttccaaaaattgtcaaaaagtgattgttcaaatatcatttctca 138  Q
    ||||||||| |||||||||||||| |||||||||  ||||||   ||  |||||||||| |||| ||||| |  |||||||||||||||    
T  30413514 gaagagagaaaataaaaacacatgcgagtatgagtgagaggaattttttaaaaattgtcgaaaaatgattttagaaatatcatttctca 30413426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 137
Target Start/End: Complemental strand, 38821442 - 38821366
Alignment:
Q  62 taaaaacaca-tgtgagtatgagaaagaggatcgttccaaaaattgtcaaaaagtgattgttcaaatatcatttctc 137  Q
    |||||||||| |||||||||||||||||  || ||  ||||| |||||| ||| || ||||||||||||||||||||    
T  38821442 taaaaacacaatgtgagtatgagaaagaaaattgtcacaaaagttgtcataaaatggttgttcaaatatcatttctc 38821366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 113
Target Start/End: Original strand, 15610820 - 15610879
Alignment:
Q  54 agagagaataaaaacacatgtgagtatgagaaagaggatcgttccaaaaattgtcaaaaa 113  Q
    |||||||||||||| |||||||||||||| | ||||| | ||| ||||| ||||||||||    
T  15610820 agagagaataaaaaaacatgtgagtatgatagagagggttgtttcaaaagttgtcaaaaa 15610879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 137
Target Start/End: Original strand, 37731232 - 37731271
Alignment:
Q  98 caaaaattgtcaaaaagtgattgttcaaatatcatttctc 137  Q
    ||||| ||||||||||||| ||||||||||||||||||||    
T  37731232 caaaagttgtcaaaaagtggttgttcaaatatcatttctc 37731271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 138
Target Start/End: Original strand, 45376201 - 45376293
Alignment:
Q  50 gaagagagagaataaaaacacatgtgagtatgagaaagag----gatcgttccaaaaattgtcaaaaagtgattgttcaaatatcatttctca 138  Q
    ||||||| |||| ||||| |||||||||||||||| ||||    | | ||  ||||| ||||||||||||| |||| ||||||||||||||||    
T  45376201 gaagagatagaacaaaaatacatgtgagtatgagagagagagagggttgtcacaaaagttgtcaaaaagtggttgtacaaatatcatttctca 45376293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 137
Target Start/End: Complemental strand, 1352426 - 1352388
Alignment:
Q  99 aaaaattgtcaaaaagtgattgttcaaatatcatttctc 137  Q
    |||| |||||||||| |||||||||||||||||||||||    
T  1352426 aaaagttgtcaaaaattgattgttcaaatatcatttctc 1352388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 140
Target Start/End: Original strand, 7664101 - 7664143
Alignment:
Q  98 caaaaattgtcaaaaagtgattgttcaaatatcatttctcata 140  Q
    ||||||||||| |||| | ||||||||||||||||||||||||    
T  7664101 caaaaattgtccaaaaataattgttcaaatatcatttctcata 7664143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 134
Target Start/End: Original strand, 36417447 - 36417477
Alignment:
Q  104 ttgtcaaaaagtgattgttcaaatatcattt 134  Q
    |||||||||||||||||||||||||||||||    
T  36417447 ttgtcaaaaagtgattgttcaaatatcattt 36417477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 137
Target Start/End: Original strand, 36587501 - 36587539
Alignment:
Q  99 aaaaattgtcaaaaagtgattgttcaaatatcatttctc 137  Q
    ||||||||||||||| || ||||||||||||||||||||    
T  36587501 aaaaattgtcaaaaaatggttgttcaaatatcatttctc 36587539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 104 - 137
Target Start/End: Original strand, 19695718 - 19695751
Alignment:
Q  104 ttgtcaaaaagtgattgttcaaatatcatttctc 137  Q
    |||||||||||||||||| |||||||||||||||    
T  19695718 ttgtcaaaaagtgattgtacaaatatcatttctc 19695751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 98 - 139
Target Start/End: Original strand, 31922325 - 31922366
Alignment:
Q  98 caaaaattgtcaaaaagtgattgttcaaatatcatttctcat 139  Q
    |||||||||||||||| || |||||| |||||||||||||||    
T  31922325 caaaaattgtcaaaaactggttgttcgaatatcatttctcat 31922366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 57 - 138
Target Start/End: Original strand, 40874252 - 40874333
Alignment:
Q  57 gagaataaaaacacatgtgagtatgagaaagaggatcgttccaaaaattgtcaaaaagtgattgttcaaatatcatttctca 138  Q
    |||||||||| || |||||||||||||| | | | | ||| ||||| |||| ||||| || |||| ||||||||||||||||    
T  40874252 gagaataaaagcatatgtgagtatgagagacatggttgtttcaaaagttgttaaaaaatggttgtacaaatatcatttctca 40874333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 137
Target Start/End: Original strand, 10749663 - 10749750
Alignment:
Q  50 gaagagagagaataaaaaca-catgtgagtatgagaaagaggatcgttccaaaaattgtcaaaaagtgattgttcaaatatcatttctc 137  Q
    ||||||||||||||||||||  |||||||||||| | |||| || | || ||| ||||||| ||| || |||| |||||||||||||||    
T  10749663 gaagagagagaataaaaacataatgtgagtatgaaagagagaattg-tcaaaagattgtcataaaatggttgtacaaatatcatttctc 10749750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 138
Target Start/End: Complemental strand, 15260346 - 15260306
Alignment:
Q  98 caaaaattgtcaaaaagtgattgttcaaatatcatttctca 138  Q
    ||||| ||||| ||||||| |||||||||||||||||||||    
T  15260346 caaaagttgtctaaaagtggttgttcaaatatcatttctca 15260306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 138
Target Start/End: Original strand, 22888854 - 22888893
Alignment:
Q  98 caaaaattgtcaaaaagtgattgttcaaatatcatttctca 138  Q
    |||||||||||||||| || |||||||||||||||||||||    
T  22888854 caaaaattgtcaaaaa-tggttgttcaaatatcatttctca 22888893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 136
Target Start/End: Complemental strand, 39285886 - 39285854
Alignment:
Q  104 ttgtcaaaaagtgattgttcaaatatcatttct 136  Q
    |||||||||||||||||| ||||||||||||||    
T  39285886 ttgtcaaaaagtgattgtacaaatatcatttct 39285854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 2e-23; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 50 - 137
Target Start/End: Original strand, 30170713 - 30170800
Alignment:
Q  50 gaagagagagaataaaaacacatgtgagtatgagaaagaggatcgttccaaaaattgtcaaaaagtgattgttcaaatatcatttctc 137  Q
    ||||||||||||||||||||||||||||||||||| ||| | | ||| ||||| ||||||||||||| |||| |||||||||||||||    
T  30170713 gaagagagagaataaaaacacatgtgagtatgagagagatggttgtttcaaaagttgtcaaaaagtggttgtacaaatatcatttctc 30170800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 50 - 131
Target Start/End: Complemental strand, 14127331 - 14127250
Alignment:
Q  50 gaagagagagaataaaaacacatgtgagtatgagaaagaggatcgttccaaaaattgtcaaaaagtgattgttcaaatatca 131  Q
    ||||||||||||| ||||||||||||||||||||| ||| | | ||||||||||||||||||||||| |||| |||||||||    
T  14127331 gaagagagagaattaaaacacatgtgagtatgagagagatggttgttccaaaaattgtcaaaaagtggttgtacaaatatca 14127250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 63 - 137
Target Start/End: Original strand, 26629107 - 26629181
Alignment:
Q  63 aaaaacacatgtgagtatgagaaagaggatcgttccaaaaattgtcaaaaagtgattgttcaaatatcatttctc 137  Q
    ||||| |||||||||||||||| ||||| | ||| ||||| ||||||||||||| |||| |||||||||||||||    
T  26629107 aaaaaaacatgtgagtatgagagagagggttgtttcaaaagttgtcaaaaagtggttgtacaaatatcatttctc 26629181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 53 - 137
Target Start/End: Original strand, 43066581 - 43066665
Alignment:
Q  53 gagagagaataaaaacacatgtgagtatgagaaagaggatcgttccaaaaattgtcaaaaagtgattgttcaaatatcatttctc 137  Q
    |||||||||||||||||||| ||  ||||||| ||| ||| ||| ||||| |||| |||||||| |||| |||||||||||||||    
T  43066581 gagagagaataaaaacacatatggatatgagagagatgattgtttcaaaagttgttaaaaagtggttgtacaaatatcatttctc 43066665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 50 - 133
Target Start/End: Original strand, 37379418 - 37379501
Alignment:
Q  50 gaagagagagaataaaaacacatgtgagtatgagaaagaggatcgttccaaaaattgtcaaaaagtgattgttcaaatatcatt 133  Q
    |||||| |||||||||| ||||||||||||||||| ||| | | ||| ||||| ||||||||||||| || | |||||||||||    
T  37379418 gaagagggagaataaaagcacatgtgagtatgagagagatggttgtttcaaaagttgtcaaaaagtggttctacaaatatcatt 37379501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 52 - 137
Target Start/End: Original strand, 33605063 - 33605149
Alignment:
Q  52 agagagagaataaaaacaca-tgtgagtatgagaaagaggatcgttccaaaaattgtcaaaaagtgattgttcaaatatcatttctc 137  Q
    ||||||||| |||||||||| ||||||||||||| |||  || ||||||||| || ||| ||| || ||||||||||||||||||||    
T  33605063 agagagagagtaaaaacacaatgtgagtatgagagagaaaattgttccaaaagttatcataaaatggttgttcaaatatcatttctc 33605149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 58 - 139
Target Start/End: Original strand, 8835862 - 8835943
Alignment:
Q  58 agaataaaaacacatgtgagtatgagaaagaggatcgttccaaaaattgtcaaaaagtgattgttcaaatatcatttctcat 139  Q
    ||||||||||||||||||| | | ||| ||||| | |||  |||| ||||||||||||||| || |||||||||||||||||    
T  8835862 agaataaaaacacatgtgatttttagagagagggttgttttaaaagttgtcaaaaagtgatcgtacaaatatcatttctcat 8835943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 50 - 138
Target Start/End: Complemental strand, 4721816 - 4721728
Alignment:
Q  50 gaagagagagaataaaaacacatgtgagtatgagaaagaggatcgttccaaaaattgtcaaaaagtgattgttcaaatatcatttctca 138  Q
    ||||||||||||||||||||||||||||||||||| | | | | ||  | ||| |||||||||  || |||| ||||||||||||||||    
T  4721816 gaagagagagaataaaaacacatgtgagtatgagagaaaaggttgtatccaaagttgtcaaaatttggttgtacaaatatcatttctca 4721728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 50 - 138
Target Start/End: Complemental strand, 28434529 - 28434441
Alignment:
Q  50 gaagagagagaataaaaacacatgtgagtatgagaaagaggatcgttccaaaaattgtcaaaaagtgattgttcaaatatcatttctca 138  Q
    |||||| |||||||||||||||||||||||| ||| |||||||  |  | ||| || ||||||  ||||||| ||||||||||||||||    
T  28434529 gaagagggagaataaaaacacatgtgagtataagagagaggattatctccaaagttatcaaaatttgattgtacaaatatcatttctca 28434441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 53 - 139
Target Start/End: Complemental strand, 21467466 - 21467382
Alignment:
Q  53 gagagagaataaaaacacatgtgagtatgagaaagaggatcgttccaaaaattgtcaaaaagtgattgttcaaatatcatttctcat 139  Q
    |||||||||||||||||||||||||||||||  ||| ||| |||  |||| |||||||||| | | |||  ||||||||||||||||    
T  21467466 gagagagaataaaaacacatgtgagtatgag--agatgattgttttaaaagttgtcaaaaaataaatgtataaatatcatttctcat 21467382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 50 - 84
Target Start/End: Original strand, 16585376 - 16585410
Alignment:
Q  50 gaagagagagaataaaaacacatgtgagtatgaga 84  Q
    |||||||||||||||||||||||||||||||||||    
T  16585376 gaagagagagaataaaaacacatgtgagtatgaga 16585410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 140
Target Start/End: Complemental strand, 26026962 - 26026893
Alignment:
Q  71 atgtgagtatgagaaagaggatcgttccaaaaattgtcaaaaagtgattgttcaaatatcatttctcata 140  Q
    ||||||||||||||||||   | ||  ||||| |||||||||| || |||||||||||||||||||||||    
T  26026962 atgtgagtatgagaaagaaagttgtcacaaaagttgtcaaaaaatggttgttcaaatatcatttctcata 26026893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 140
Target Start/End: Complemental strand, 34018874 - 34018805
Alignment:
Q  71 atgtgagtatgagaaagaggatcgttccaaaaattgtcaaaaagtgattgttcaaatatcatttctcata 140  Q
    |||||||||||||| |||  || ||| ||||| |||||| ||| || |||||||||||||||||||||||    
T  34018874 atgtgagtatgagagagaaaattgttgcaaaagttgtcagaaaatggttgttcaaatatcatttctcata 34018805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 99 - 140
Target Start/End: Original strand, 41406889 - 41406930
Alignment:
Q  99 aaaaattgtcaaaaagtgattgttcaaatatcatttctcata 140  Q
    ||||||||||||||| ||||||| ||||||||||||||||||    
T  41406889 aaaaattgtcaaaaaatgattgtacaaatatcatttctcata 41406930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 137
Target Start/End: Complemental strand, 1068645 - 1068606
Alignment:
Q  98 caaaaattgtcaaaaagtgattgttcaaatatcatttctc 137  Q
    ||||| ||||||||||||| ||||||||||||||||||||    
T  1068645 caaaagttgtcaaaaagtggttgttcaaatatcatttctc 1068606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 137
Target Start/End: Original strand, 2730993 - 2731032
Alignment:
Q  98 caaaaattgtcaaaaagtgattgttcaaatatcatttctc 137  Q
    ||||| ||||||||||||| ||||||||||||||||||||    
T  2730993 caaaagttgtcaaaaagtggttgttcaaatatcatttctc 2731032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 137
Target Start/End: Complemental strand, 13592845 - 13592766
Alignment:
Q  58 agaataaaaacacatgtgagtatgagaaagaggatcgttccaaaaattgtcaaaaagtgattgttcaaatatcatttctc 137  Q
    ||||||||||||||||||||||||||| | ||  | ||| ||||| |||||||||| |   ||| |||||||||||||||    
T  13592845 agaataaaaacacatgtgagtatgagagatagagttgtttcaaaagttgtcaaaaaataggtgtacaaatatcatttctc 13592766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 137
Target Start/End: Original strand, 28772156 - 28772195
Alignment:
Q  98 caaaaattgtcaaaaagtgattgttcaaatatcatttctc 137  Q
    |||||||||||||||| || ||||||||||||||||||||    
T  28772156 caaaaattgtcaaaaaatggttgttcaaatatcatttctc 28772195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 137
Target Start/End: Original strand, 34435769 - 34435808
Alignment:
Q  98 caaaaattgtcaaaaagtgattgttcaaatatcatttctc 137  Q
    ||||| ||||||||||||| ||||||||||||||||||||    
T  34435769 caaaagttgtcaaaaagtggttgttcaaatatcatttctc 34435808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 84
Target Start/End: Complemental strand, 26509521 - 26509487
Alignment:
Q  50 gaagagagagaataaaaacacatgtgagtatgaga 84  Q
    ||||||||| |||||||||||||||||||||||||    
T  26509521 gaagagagaaaataaaaacacatgtgagtatgaga 26509487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 137
Target Start/End: Original strand, 33107900 - 33107938
Alignment:
Q  99 aaaaattgtcaaaaagtgattgttcaaatatcatttctc 137  Q
    |||| ||||||||||||| ||||||||||||||||||||    
T  33107900 aaaagttgtcaaaaagtggttgttcaaatatcatttctc 33107938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 98 - 139
Target Start/End: Original strand, 5601019 - 5601060
Alignment:
Q  98 caaaaattgtcaaaaagtgattgttcaaatatcatttctcat 139  Q
    ||||| |||||||||| || ||||||||||||||||||||||    
T  5601019 caaaagttgtcaaaaaatggttgttcaaatatcatttctcat 5601060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 98 - 139
Target Start/End: Complemental strand, 5639601 - 5639560
Alignment:
Q  98 caaaaattgtcaaaaagtgattgttcaaatatcatttctcat 139  Q
    ||||| |||||||||| || ||||||||||||||||||||||    
T  5639601 caaaagttgtcaaaaaatggttgttcaaatatcatttctcat 5639560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 100 - 137
Target Start/End: Complemental strand, 7010722 - 7010685
Alignment:
Q  100 aaaattgtcaaaaagtgattgttcaaatatcatttctc 137  Q
    |||||||||||||| ||||||| |||||||||||||||    
T  7010722 aaaattgtcaaaaaatgattgtacaaatatcatttctc 7010685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 140
Target Start/End: Original strand, 9047097 - 9047133
Alignment:
Q  104 ttgtcaaaaagtgattgttcaaatatcatttctcata 140  Q
    ||||||||||||| |||| ||||||||||||||||||    
T  9047097 ttgtcaaaaagtggttgtacaaatatcatttctcata 9047133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 139
Target Start/End: Original strand, 10553116 - 10553156
Alignment:
Q  99 aaaaattgtcaaaaagtgattgttcaaatatcatttctcat 139  Q
    ||||||||||| |||||| |||| |||||||||||||||||    
T  10553116 aaaaattgtcagaaagtggttgtacaaatatcatttctcat 10553156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 138
Target Start/End: Original strand, 14707376 - 14707416
Alignment:
Q  98 caaaaattgtcaaaaagtgattgttcaaatatcatttctca 138  Q
    ||||| |||||||||| ||| ||||||||||||||||||||    
T  14707376 caaaagttgtcaaaaaatgaatgttcaaatatcatttctca 14707416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 139
Target Start/End: Complemental strand, 26871084 - 26871044
Alignment:
Q  99 aaaaattgtcaaaaagtgattgttcaaatatcatttctcat 139  Q
    |||| |||||| ||||||||||| |||||||||||||||||    
T  26871084 aaaagttgtcataaagtgattgtacaaatatcatttctcat 26871044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 138
Target Start/End: Complemental strand, 35153054 - 35153014
Alignment:
Q  98 caaaaattgtcaaaaagtgattgttcaaatatcatttctca 138  Q
    |||||||||| | ||| ||||||||||||||||||||||||    
T  35153054 caaaaattgttacaaaatgattgttcaaatatcatttctca 35153014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 1e-21; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 50 - 138
Target Start/End: Original strand, 6892617 - 6892705
Alignment:
Q  50 gaagagagagaataaaaacacatgtgagtatgagaaagaggatcgttccaaaaattgtcaaaaagtgattgttcaaatatcatttctca 138  Q
    ||||||||||||||||||||||||||||||||||| ||||| | ||| || || |||||||| |||| |||| ||||||||||||||||    
T  6892617 gaagagagagaataaaaacacatgtgagtatgagagagagggttgtttcataagttgtcaaagagtggttgtacaaatatcatttctca 6892705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 53 - 132
Target Start/End: Original strand, 24957178 - 24957257
Alignment:
Q  53 gagagagaataaaaacacatgtgagtatgagaaagaggatcgttccaaaaattgtcaaaaagtgattgttcaaatatcat 132  Q
    |||||||||||||||||||||||||||||||| ||||| | || |||||||||||||||||||| ||||  |||||||||    
T  24957178 gagagagaataaaaacacatgtgagtatgagagagagggttgtgccaaaaattgtcaaaaagtggttgtataaatatcat 24957257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 50 - 141
Target Start/End: Original strand, 42663399 - 42663490
Alignment:
Q  50 gaagagagagaataaaaacacatgtgagtatgagaaagaggatcgttccaaaaattgtcaaaaagtgattgttcaaatatcatttctcatag 141  Q
    ||||| ||||||||||||||||||||||||||||| | ||||| ||| ||||| ||||| |||| |||||||  ||||||||||| ||||||    
T  42663399 gaagatagagaataaaaacacatgtgagtatgagatataggattgtttcaaaagttgtcgaaaattgattgtaaaaatatcatttttcatag 42663490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 50 - 137
Target Start/End: Complemental strand, 48395335 - 48395248
Alignment:
Q  50 gaagagagagaataaaaacacatgtgagtatgagaaagaggatcgttccaaaaattgtcaaaaagtgattgttcaaatatcatttctc 137  Q
    |||||||||||||||||||| |||||||||| ||| ||||  | ||| ||||| ||||||||||||| |||| |||||||||||||||    
T  48395335 gaagagagagaataaaaacatatgtgagtataagagagagagttgtttcaaaagttgtcaaaaagtggttgtacaaatatcatttctc 48395248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 50 - 139
Target Start/End: Complemental strand, 47925424 - 47925335
Alignment:
Q  50 gaagagagagaataaaaacacatgtgagtatgagaaagaggatcgttccaaaaattgtcaaaaagtgattgttcaaatatcatttctcat 139  Q
    ||||| ||||||| ||||||||||||||||||||| ||||| | ||||||||| |||| ||| |||| |||| ||||||||||| |||||    
T  47925424 gaagatagagaattaaaacacatgtgagtatgagagagagggttgttccaaaagttgttaaagagtggttgtacaaatatcattcctcat 47925335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 52 - 136
Target Start/End: Original strand, 17909036 - 17909120
Alignment:
Q  52 agagagagaataaaaacacatgtgagtatgagaaagaggatcgttccaaaaattgtcaaaaagtgattgttcaaatatcatttct 136  Q
    |||||||||||||||||||||||||||| |||| ||||| |  || ||||| |||||||||| ||||||| ||||||| ||||||    
T  17909036 agagagagaataaaaacacatgtgagtacgagagagagggttatttcaaaagttgtcaaaaaatgattgtacaaatattatttct 17909120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 51 - 111
Target Start/End: Original strand, 27306010 - 27306070
Alignment:
Q  51 aagagagagaataaaaacacatgtgagtatgagaaagaggatcgttccaaaaattgtcaaa 111  Q
    |||||||||||||||||||||||||||||||||| ||||||| ||| ||||| ||||||||    
T  27306010 aagagagagaataaaaacacatgtgagtatgagagagaggattgtttcaaaagttgtcaaa 27306070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 51 - 137
Target Start/End: Complemental strand, 8352860 - 8352774
Alignment:
Q  51 aagagagagaataaaaacacatgtgagtatgagaaagaggatcgttccaaaaattgtcaaaaagtgattgttcaaatatcatttctc 137  Q
    |||| ||||||||||| ||||||| ||||||||| ||| | | ||| ||||||||||||||||||| ||||  ||||||||||||||    
T  8352860 aagaaagagaataaaagcacatgtaagtatgagagagatggttgtttcaaaaattgtcaaaaagtggttgtataaatatcatttctc 8352774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 54 - 140
Target Start/End: Original strand, 48314349 - 48314435
Alignment:
Q  54 agagagaataaaaacacatgtgagtatgagaaagaggatcgttccaaaaattgtcaaaaagtgattgttcaaatatcatttctcata 140  Q
    ||||||||||||||| ||||| ||||||||| ||||| | |||  |||| |||| |||||||| |||| ||||||||||||||||||    
T  48314349 agagagaataaaaactcatgtaagtatgagagagagggttgttgtaaaagttgttaaaaagtggttgtacaaatatcatttctcata 48314435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 98 - 139
Target Start/End: Complemental strand, 34978335 - 34978294
Alignment:
Q  98 caaaaattgtcaaaaagtgattgttcaaatatcatttctcat 139  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  34978335 caaaaattgtcaaaaagtgattgttcaaatatcatttctcat 34978294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 50 - 132
Target Start/End: Original strand, 22588945 - 22589027
Alignment:
Q  50 gaagagagagaataaaaacacatgtgagtatgagaaagaggatcgttccaaaaattgtcaaaaagtgattgttcaaatatcat 132  Q
    ||||||||| ||||||| ||||||||||||||||| || || | ||| ||||| |||||||||| || |||| ||||||||||    
T  22588945 gaagagagataataaaagcacatgtgagtatgagagagggggttgtttcaaaagttgtcaaaaaatggttgtacaaatatcat 22589027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 50 - 138
Target Start/End: Complemental strand, 6427302 - 6427209
Alignment:
Q  50 gaagagagagaataaaaacacatgtga-----gtatgagaaagaggatcgttccaaaaattgtcaaaaagtgattgttcaaatatcatttctca 138  Q
    |||||||| ||||||||||||||||||     |||||||| ||||| | |||| |||| ||||||||||||| ||||  |||||||||||||||    
T  6427302 gaagagagcgaataaaaacacatgtgacgtgagtatgagagagagggttgttctaaaagttgtcaaaaagtggttgtataaatatcatttctca 6427209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 89
Target Start/End: Original strand, 7212647 - 7212686
Alignment:
Q  50 gaagagagagaataaaaacacatgtgagtatgagaaagag 89  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  7212647 gaagagagagaataaaaacacatgtgagtatgagagagag 7212686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 134
Target Start/End: Original strand, 11503561 - 11503641
Alignment:
Q  50 gaagagagagaataaaaacacatgtgagtatgagaaagaggatcgttccaaaaattgtcaaaaagtgattgttcaaatatcattt 134  Q
    ||||||||||||||||||| ||||||||||||||| ||    | |||||| || ||||||||| ||| |||| ||||||||||||    
T  11503561 gaagagagagaataaaaacgcatgtgagtatgagagag----ttgttccataagttgtcaaaatgtggttgtacaaatatcattt 11503641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 52 - 113
Target Start/End: Complemental strand, 34820695 - 34820634
Alignment:
Q  52 agagagagaataaaaacacatgtgagtatgagaaagaggatcgttccaaaaattgtcaaaaa 113  Q
    |||||||||||||||||| |||||||||||||| ||||| | ||| ||||| |||| |||||    
T  34820695 agagagagaataaaaacaaatgtgagtatgagatagagggttgtttcaaaagttgtaaaaaa 34820634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 138
Target Start/End: Original strand, 7714821 - 7714865
Alignment:
Q  94 gttccaaaaattgtcaaaaagtgattgttcaaatatcatttctca 138  Q
    ||||||||||||||||||||||| |||| ||||||||||| ||||    
T  7714821 gttccaaaaattgtcaaaaagtggttgtacaaatatcattcctca 7714865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 142
Target Start/End: Original strand, 45256715 - 45256807
Alignment:
Q  50 gaagagagagaataaaaacacatgtgagtatgagaaagaggatcgttccaaaaattgtcaaaaagtgattgttcaaatatcatttctcatagt 142  Q
    |||||| |||||||||||||||||||||||| |||   || |  ||| ||||| |||||||||| |||||||  |||||| |||| |||||||    
T  45256715 gaagagggagaataaaaacacatgtgagtataagattaagcactgtttcaaaagttgtcaaaaattgattgtcgaaatattatttttcatagt 45256807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 137
Target Start/End: Original strand, 2008890 - 2008929
Alignment:
Q  98 caaaaattgtcaaaaagtgattgttcaaatatcatttctc 137  Q
    ||||| ||||||||||||| ||||||||||||||||||||    
T  2008890 caaaagttgtcaaaaagtggttgttcaaatatcatttctc 2008929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 137
Target Start/End: Complemental strand, 37352149 - 37352110
Alignment:
Q  98 caaaaattgtcaaaaagtgattgttcaaatatcatttctc 137  Q
    |||||||||||||||| || ||||||||||||||||||||    
T  37352149 caaaaattgtcaaaaaatggttgttcaaatatcatttctc 37352110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 134
Target Start/End: Complemental strand, 23816366 - 23816284
Alignment:
Q  52 agagagagaataaaaacacatgtgagtatgagaaagaggatcgttccaaaaattgtcaaaaagtgattgttcaaatatcattt 134  Q
    |||||||| ||||||||||||| || ||| | | ||| | | ||||||||| |||| |||||||||||||  |||||||||||    
T  23816366 agagagaggataaaaacacatgcgaatataaaagagacggttgttccaaaagttgttaaaaagtgattgtataaatatcattt 23816284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 137
Target Start/End: Original strand, 44649359 - 44649397
Alignment:
Q  99 aaaaattgtcaaaaagtgattgttcaaatatcatttctc 137  Q
    ||||||||||||||| || ||||||||||||||||||||    
T  44649359 aaaaattgtcaaaaattggttgttcaaatatcatttctc 44649397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 51 - 84
Target Start/End: Complemental strand, 11813431 - 11813398
Alignment:
Q  51 aagagagagaataaaaacacatgtgagtatgaga 84  Q
    |||||||| |||||||||||||||||||||||||    
T  11813431 aagagagaaaataaaaacacatgtgagtatgaga 11813398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 98 - 143
Target Start/End: Original strand, 12007218 - 12007263
Alignment:
Q  98 caaaaattgtcaaaaagtgattgttcaaatatcatttctcatagtt 143  Q
    ||||| |||||||||| || |||||||||||||||||||| |||||    
T  12007218 caaaagttgtcaaaaaatggttgttcaaatatcatttctcttagtt 12007263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 139
Target Start/End: Original strand, 32777740 - 32777780
Alignment:
Q  99 aaaaattgtcaaaaagtgattgttcaaatatcatttctcat 139  Q
    |||| |||||||||| || ||||||||||||||||||||||    
T  32777740 aaaagttgtcaaaaaatggttgttcaaatatcatttctcat 32777780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 137
Target Start/End: Complemental strand, 47448902 - 47448826
Alignment:
Q  62 taaaaacaca-tgtgagtatgagaaagaggatcgttccaaaaattgtcaaaaagtgattgttcaaatatcatttctc 137  Q
    |||||||||| ||||||||||||| |||   | ||  ||||| |||||||||| || ||||||||||||||||||||    
T  47448902 taaaaacacaatgtgagtatgagagagaaagttgtcacaaaagttgtcaaaaaatggttgttcaaatatcatttctc 47448826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 138
Target Start/End: Complemental strand, 49069288 - 49069248
Alignment:
Q  98 caaaaattgtcaaaaagtgattgttcaaatatcatttctca 138  Q
    ||||| ||||||||||||| |||| ||||||||||||||||    
T  49069288 caaaagttgtcaaaaagtggttgtacaaatatcatttctca 49069248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 1e-21; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 51 - 139
Target Start/End: Original strand, 15004709 - 15004797
Alignment:
Q  51 aagagagagaataaaaacacatgtgagtatgagaaagaggatcgttccaaaaattgtcaaaaagtgattgttcaaatatcatttctcat 139  Q
    ||||||||||||||||| |||  ||||||||||| ||| ||| ||| ||||||||||||||||||| |||| |||||||||||||||||    
T  15004709 aagagagagaataaaaaaacaaatgagtatgagagagatgattgtttcaaaaattgtcaaaaagtggttgtccaaatatcatttctcat 15004797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 55 - 139
Target Start/End: Complemental strand, 8681923 - 8681841
Alignment:
Q  55 gagagaataaaaacacatgtgagtatgagaaagaggatcgttccaaaaattgtcaaaaagtgattgttcaaatatcatttctcat 139  Q
    |||||||||||||||||||||||||| |  |||||| | |||||||||||| ||||||| ||||||| |||||||||||||||||    
T  8681923 gagagaataaaaacacatgtgagtataa--aagaggtttgttccaaaaattatcaaaaaatgattgtacaaatatcatttctcat 8681841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 50 - 137
Target Start/End: Original strand, 30838349 - 30838436
Alignment:
Q  50 gaagagagagaataaaaacacatgtgagtatgagaaagaggatcgttccaaaaattgtcaaaaagtgattgttcaaatatcatttctc 137  Q
    |||| |||||||||||||||||||||||||||||| ||| | | ||| ||||| ||||||||||||   ||| |||||||||||||||    
T  30838349 gaagggagagaataaaaacacatgtgagtatgagagagatggttgtttcaaaagttgtcaaaaagtagatgtacaaatatcatttctc 30838436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 50 - 137
Target Start/End: Complemental strand, 43057522 - 43057435
Alignment:
Q  50 gaagagagagaataaaaacacatgtgagtatgagaaagaggatcgttccaaaaattgtcaaaaagtgattgttcaaatatcatttctc 137  Q
    |||||||||||||||||||| |||||||||||||| || |  |  || ||||| ||||||||||||| |||| |||||||||||||||    
T  43057522 gaagagagagaataaaaacatatgtgagtatgagagagggagttatttcaaaagttgtcaaaaagtggttgtacaaatatcatttctc 43057435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 54 - 138
Target Start/End: Original strand, 26754626 - 26754710
Alignment:
Q  54 agagagaataaaaacacatgtgagtatgagaaagaggatcgttccaaaaattgtcaaaaagtgattgttcaaatatcatttctca 138  Q
    ||||||||||||||||||||||||||||||| ||||| | ||  | ||| |||||||||  || |||| ||||||||||||||||    
T  26754626 agagagaataaaaacacatgtgagtatgagagagagggttgtctccaaagttgtcaaaatttggttgtacaaatatcatttctca 26754710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 50 - 137
Target Start/End: Complemental strand, 844120 - 844036
Alignment:
Q  50 gaagagagagaataaaaacacatgtgagtatgagaaagaggatcgttccaaaaattgtcaaaaagtgattgttcaaatatcatttctc 137  Q
    |||||||||||||||| |||||||||| ||||||| |   ||| ||| ||||| |||||||||| || |||| |||||||||||||||    
T  844120 gaagagagagaataaatacacatgtgaatatgagaga---gattgtttcaaaagttgtcaaaaaatggttgtgcaaatatcatttctc 844036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 51 - 137
Target Start/End: Complemental strand, 2629906 - 2629818
Alignment:
Q  51 aagagagagaataaaaacacatgtgagtatgagaaagag--gatcgttccaaaaattgtcaaaaagtgattgttcaaatatcatttctc 137  Q
    ||||||||||||||||| |||||||| ||||||| ||||  | | ||| ||||| |||||||||| || |||| |||||||||||||||    
T  2629906 aagagagagaataaaaaaacatgtgaatatgagagagagaaggttgtttcaaaagttgtcaaaaaatggttgtacaaatatcatttctc 2629818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 52 - 138
Target Start/End: Original strand, 8728565 - 8728653
Alignment:
Q  52 agagagagaataaaaacacatgtgagtatgagaaagag--gatcgttccaaaaattgtcaaaaagtgattgttcaaatatcatttctca 138  Q
    |||||||||||||||  ||||||||||| |||| ||||  | | ||| ||||| ||||||||||||| |||| ||||||||||||||||    
T  8728565 agagagagaataaaattacatgtgagtacgagagagagagggttgtttcaaaagttgtcaaaaagtggttgtacaaatatcatttctca 8728653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 51 - 137
Target Start/End: Original strand, 4800483 - 4800573
Alignment:
Q  51 aagagagagaataaaaacacatgtgagtatgagaaagag-ga---tcgttccaaaaattgtcaaaaagtgattgttcaaatatcatttctc 137  Q
    |||||||||||||||||||||| ||||||||||| |||| ||   | ||||||||| ||||||||||||  ||||  ||||||||||||||    
T  4800483 aagagagagaataaaaacacatatgagtatgagagagagagagagttgttccaaaagttgtcaaaaagtagttgtataaatatcatttctc 4800573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 54 - 138
Target Start/End: Original strand, 41621916 - 41622000
Alignment:
Q  54 agagagaataaaaacacatgtgagtatgagaaagaggatcgttccaaaaattgtcaaaaagtgattgttcaaatatcatttctca 138  Q
    ||||||||||||| ||||||| ||||||||| |   | | ||| ||||| ||||||||||||| |||| ||||||||||||||||    
T  41621916 agagagaataaaagcacatgtaagtatgagagatgtggttgtttcaaaagttgtcaaaaagtggttgtacaaatatcatttctca 41622000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 98 - 135
Target Start/End: Complemental strand, 39195756 - 39195719
Alignment:
Q  98 caaaaattgtcaaaaagtgattgttcaaatatcatttc 135  Q
    |||||||| |||||||||||||||||||||||||||||    
T  39195756 caaaaattatcaaaaagtgattgttcaaatatcatttc 39195719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 139
Target Start/End: Original strand, 15022222 - 15022315
Alignment:
Q  51 aagagagagaataaaaaca---catgtgagtatgaga--aagaggatcgttccaaaaattgtcaaaaagtgattgttcaaatatcatttctcat 139  Q
    ||||||||||||||||| |   || ||||||||||||  |||||||| ||| ||||| ||||||||||||| || | ||||||| |||||||||    
T  15022222 aagagagagaataaaaaaaaaacaagtgagtatgagagaaagaggattgtttcaaaagttgtcaaaaagtggttttccaaatattatttctcat 15022315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 137
Target Start/End: Complemental strand, 611903 - 611864
Alignment:
Q  98 caaaaattgtcaaaaagtgattgttcaaatatcatttctc 137  Q
    ||||| |||||||||||| |||||||||||||||||||||    
T  611903 caaaagttgtcaaaaagtaattgttcaaatatcatttctc 611864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 89
Target Start/End: Original strand, 19645608 - 19645643
Alignment:
Q  54 agagagaataaaaacacatgtgagtatgagaaagag 89  Q
    ||||||||||||||||||||||||||||||| ||||    
T  19645608 agagagaataaaaacacatgtgagtatgagagagag 19645643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 140
Target Start/End: Complemental strand, 35570901 - 35570810
Alignment:
Q  50 gaagagagag-aataaaaacacatgtgagtatgagaaagaggatcgttccaaaaattgtcaaaaagtgattgttcaaatatcatttctcata 140  Q
    |||||||||| || |||||||||||||||||||||| ||||| | ||   |||| || ||||||  | ||||| ||||||||||||||||||    
T  35570901 gaagagagaggaaaaaaaacacatgtgagtatgagagagagggttgtctaaaaagttatcaaaatttaattgtacaaatatcatttctcata 35570810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 140
Target Start/End: Complemental strand, 21156026 - 21155984
Alignment:
Q  98 caaaaattgtcaaaaagtgattgttcaaatatcatttctcata 140  Q
    ||||| |||||||||| || |||||||||||||||||||||||    
T  21156026 caaaagttgtcaaaaaatggttgttcaaatatcatttctcata 21155984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 104 - 137
Target Start/End: Original strand, 35075614 - 35075647
Alignment:
Q  104 ttgtcaaaaagtgattgttcaaatatcatttctc 137  Q
    |||||||||| |||||||||||||||||||||||    
T  35075614 ttgtcaaaaaatgattgttcaaatatcatttctc 35075647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 135
Target Start/End: Complemental strand, 54741 - 54705
Alignment:
Q  99 aaaaattgtcaaaaagtgattgttcaaatatcatttc 135  Q
    |||| |||||||||| |||||||||||||||||||||    
T  54741 aaaagttgtcaaaaaatgattgttcaaatatcatttc 54705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 139
Target Start/End: Complemental strand, 17063903 - 17063863
Alignment:
Q  99 aaaaattgtcaaaaagtgattgttcaaatatcatttctcat 139  Q
    |||| |||||||||| ||||||| |||||||||||||||||    
T  17063903 aaaagttgtcaaaaaatgattgtacaaatatcatttctcat 17063863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 140
Target Start/End: Complemental strand, 21210863 - 21210827
Alignment:
Q  104 ttgtcaaaaagtgattgttcaaatatcatttctcata 140  Q
    ||||||||||||| ||||||||||||||||| |||||    
T  21210863 ttgtcaaaaagtggttgttcaaatatcatttttcata 21210827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1625 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold1625
Description:

Target: scaffold1625; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 50 - 133
Target Start/End: Original strand, 765 - 848
Alignment:
Q  50 gaagagagagaataaaaacacatgtgagtatgagaaagaggatcgttccaaaaattgtcaaaaagtgattgttcaaatatcatt 133  Q
    ||||||||||||| ||||||||||||||||||||| ||| | | ||| ||||| |||||||||| ||||||| |||||||||||    
T  765 gaagagagagaattaaaacacatgtgagtatgagagagatggttgtttcaaaagttgtcaaaaaatgattgtacaaatatcatt 848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 1e-18; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 50 - 133
Target Start/End: Complemental strand, 10840805 - 10840722
Alignment:
Q  50 gaagagagagaataaaaacacatgtgagtatgagaaagaggatcgttccaaaaattgtcaaaaagtgattgttcaaatatcatt 133  Q
    ||||||||||||| || ||||| |||||||||||| ||||||| ||||||||| |||||||||| | ||||| |||||||||||    
T  10840805 gaagagagagaattaatacacaagtgagtatgagagagaggattgttccaaaagttgtcaaaaaataattgtacaaatatcatt 10840722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 50 - 134
Target Start/End: Complemental strand, 13093715 - 13093629
Alignment:
Q  50 gaagagagagaataaaaacacatgtgagtatgagaaagag-ga-tcgttccaaaaattgtcaaaaagtgattgttcaaatatcattt 134  Q
    ||||||||||||||||||||||| ||||||||||| |||| || | ||| ||||| ||||||||||||| |||| ||||||||||||    
T  13093715 gaagagagagaataaaaacacatatgagtatgagagagagagagttgtttcaaaagttgtcaaaaagtggttgtacaaatatcattt 13093629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 50 - 135
Target Start/End: Complemental strand, 38683 - 38598
Alignment:
Q  50 gaagagagagaataaaaacacatgtgagtatgagaaagaggatcgttccaaaaattgtcaaaaagtgattgttcaaatatcatttc 135  Q
    |||||||||||||||||| |||||||||||||||| ||||| | ||| | ||| |||||||||  || |||| |||||||||||||    
T  38683 gaagagagagaataaaaatacatgtgagtatgagagagagggttgtttccaaagttgtcaaaatttggttgtacaaatatcatttc 38598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 54 - 134
Target Start/End: Complemental strand, 20029344 - 20029264
Alignment:
Q  54 agagagaataaaaacacatgtgagtatgagaaagaggatcgttccaaaaattgtcaaaaagtgattgttcaaatatcattt 134  Q
    ||||||||||||||||||||||||||||||| ||| | | ||| ||||| |||| |||||||| ||||  |||||||||||    
T  20029344 agagagaataaaaacacatgtgagtatgagagagaaggttgtttcaaaagttgttaaaaagtggttgtataaatatcattt 20029264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 98 - 140
Target Start/End: Original strand, 18065122 - 18065164
Alignment:
Q  98 caaaaattgtcaaaaagtgattgttcaaatatcatttctcata 140  Q
    ||||| |||||||||||||||||||||||||||||||||||||    
T  18065122 caaaagttgtcaaaaagtgattgttcaaatatcatttctcata 18065164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 50 - 121
Target Start/End: Original strand, 26554589 - 26554661
Alignment:
Q  50 gaagagagagaat-aaaaacacatgtgagtatgagaaagaggatcgttccaaaaattgtcaaaaagtgattgt 121  Q
    ||||||||||||| ||||||||||| |||||||| | ||| | | ||||||||||||||||||||||| ||||    
T  26554589 gaagagagagaatgaaaaacacatgcgagtatgaaagagatggttgttccaaaaattgtcaaaaagtggttgt 26554661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 98 - 137
Target Start/End: Original strand, 2242054 - 2242093
Alignment:
Q  98 caaaaattgtcaaaaagtgattgttcaaatatcatttctc 137  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  2242054 caaaaattgtcaaaaaatgattgttcaaatatcatttctc 2242093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 113
Target Start/End: Complemental strand, 33683587 - 33683524
Alignment:
Q  50 gaagagagagaataaaaacacatgtgagtatgagaaagaggatcgttccaaaaattgtcaaaaa 113  Q
    ||||| ||| ||||||||||||||||||||||||| ||||| | ||| ||||| ||||||||||    
T  33683587 gaagaaagaaaataaaaacacatgtgagtatgagagagagggtagtttcaaaagttgtcaaaaa 33683524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 98 - 140
Target Start/End: Complemental strand, 33712359 - 33712317
Alignment:
Q  98 caaaaattgtcaaaaagtgattgttcaaatatcatttctcata 140  Q
    ||||| ||||||||||||| |||||||||||||||||||||||    
T  33712359 caaaagttgtcaaaaagtggttgttcaaatatcatttctcata 33712317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 51 - 89
Target Start/End: Original strand, 34019914 - 34019952
Alignment:
Q  51 aagagagagaataaaaacacatgtgagtatgagaaagag 89  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  34019914 aagagagagaataaaaacacatgtgagtatgagagagag 34019952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 98 - 139
Target Start/End: Original strand, 11635567 - 11635608
Alignment:
Q  98 caaaaattgtcaaaaagtgattgttcaaatatcatttctcat 139  Q
    ||||| |||||||||| |||||||||||||||||||||||||    
T  11635567 caaaagttgtcaaaaaatgattgttcaaatatcatttctcat 11635608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 138
Target Start/End: Complemental strand, 6256518 - 6256434
Alignment:
Q  51 aagagagagaataaaaacacatgtgagtatgagaaagaggatcgttccaaaaattgtcaaaaagtgattgttcaaatatcatttctca 138  Q
    |||||||||||||||||||||||| | ||| ||  ||| ||| ||| | |||||||||||||| | ||||| ||||||||||||||||    
T  6256518 aagagagagaataaaaacacatgtaaatataag--agatgattgtttc-aaaattgtcaaaaaataattgtacaaatatcatttctca 6256434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 140
Target Start/End: Original strand, 34383868 - 34383932
Alignment:
Q  76 agtatgagaaagaggatcgttccaaaaattgtcaaaaagtgattgttcaaatatcatttctcata 140  Q
    ||||||||| ||||| | ||  |||||||||| ||||| ||| ||||||||||||||||||||||    
T  34383868 agtatgagagagagggttgtcacaaaaattgttaaaaaatgaatgttcaaatatcatttctcata 34383932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 137
Target Start/End: Original strand, 8505806 - 8505845
Alignment:
Q  98 caaaaattgtcaaaaagtgattgttcaaatatcatttctc 137  Q
    ||||| |||||||||| |||||||||||||||||||||||    
T  8505806 caaaagttgtcaaaaaatgattgttcaaatatcatttctc 8505845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 140
Target Start/End: Complemental strand, 14910216 - 14910174
Alignment:
Q  98 caaaaattgtcaaaaagtgattgttcaaatatcatttctcata 140  Q
    ||||| ||||||||||||| |||||||||| ||||||||||||    
T  14910216 caaaagttgtcaaaaagtgtttgttcaaatgtcatttctcata 14910174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 137
Target Start/End: Original strand, 16337103 - 16337141
Alignment:
Q  99 aaaaattgtcaaaaagtgattgttcaaatatcatttctc 137  Q
    ||||||||||| ||||||||||| |||||||||||||||    
T  16337103 aaaaattgtcataaagtgattgtacaaatatcatttctc 16337141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 137
Target Start/End: Original strand, 17551384 - 17551450
Alignment:
Q  71 atgtgagtatgagaaagaggatcgttccaaaaattgtcaaaaagtgattgttcaaatatcatttctc 137  Q
    |||||||||||||| |||   | ||| ||||| |||||||||| || ||||||||||||||||||||    
T  17551384 atgtgagtatgagagagaaagttgttacaaaagttgtcaaaaaatggttgttcaaatatcatttctc 17551450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 104 - 137
Target Start/End: Complemental strand, 1196091 - 1196058
Alignment:
Q  104 ttgtcaaaaagtgattgttcaaatatcatttctc 137  Q
    |||||||||||||||||| |||||||||||||||    
T  1196091 ttgtcaaaaagtgattgtacaaatatcatttctc 1196058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 99 - 140
Target Start/End: Original strand, 12500060 - 12500101
Alignment:
Q  99 aaaaattgtcaaaaagtgattgttcaaatatcatttctcata 140  Q
    ||||||||||| ||| ||||||| ||||||||||||||||||    
T  12500060 aaaaattgtcacaaaatgattgtgcaaatatcatttctcata 12500101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 99 - 140
Target Start/End: Original strand, 12507389 - 12507430
Alignment:
Q  99 aaaaattgtcaaaaagtgattgttcaaatatcatttctcata 140  Q
    ||||||||||| ||| ||||||| ||||||||||||||||||    
T  12507389 aaaaattgtcacaaaatgattgtgcaaatatcatttctcata 12507430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 99 - 140
Target Start/End: Complemental strand, 12508841 - 12508800
Alignment:
Q  99 aaaaattgtcaaaaagtgattgttcaaatatcatttctcata 140  Q
    ||||||||||| ||| ||||||| ||||||||||||||||||    
T  12508841 aaaaattgtcacaaaatgattgtgcaaatatcatttctcata 12508800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 56 - 89
Target Start/End: Complemental strand, 25109124 - 25109091
Alignment:
Q  56 agagaataaaaacacatgtgagtatgagaaagag 89  Q
    ||||||||||||||||||||||||||||| ||||    
T  25109124 agagaataaaaacacatgtgagtatgagagagag 25109091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 140
Target Start/End: Complemental strand, 1286956 - 1286920
Alignment:
Q  104 ttgtcaaaaagtgattgttcaaatatcatttctcata 140  Q
    |||||||||| | ||||||||||||||||||||||||    
T  1286956 ttgtcaaaaaataattgttcaaatatcatttctcata 1286920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 140
Target Start/End: Complemental strand, 7611528 - 7611492
Alignment:
Q  104 ttgtcaaaaagtgattgttcaaatatcatttctcata 140  Q
    |||||| ||| ||||||||||||||||||||||||||    
T  7611528 ttgtcacaaaatgattgttcaaatatcatttctcata 7611492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 137
Target Start/End: Original strand, 31204797 - 31204881
Alignment:
Q  53 gagagagaataaaaacacatgtgagtatgagaaagaggatcgttccaaaaattgtcaaaaagtgattgttcaaatatcatttctc 137  Q
    |||||||||||||||||||| ||| ||||||| ||||  |  || ||||| || ||||||| || ||||  ||||||||||||||    
T  31204797 gagagagaataaaaacacatatgaatatgagagagagagttatttcaaaagttatcaaaaaatggttgtagaaatatcatttctc 31204881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 50 - 137
Target Start/End: Original strand, 9326969 - 9327056
Alignment:
Q  50 gaagagagagaataaaaacacatgtgagtatgagaaagaggatcgttccaaaaattgtcaaaaagtgattgttcaaatatcatttctc 137  Q
    |||||||||||||||||| |||||||||||||||| ||| | | ||| ||||| ||||| |||| ||||||| |||||||||||||||    
T  9326969 gaagagagagaataaaaagacatgtgagtatgagatagatggttgtttcaaaagttgtcgaaaattgattgtacaaatatcatttctc 9327056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 56 - 137
Target Start/End: Complemental strand, 31143351 - 31143270
Alignment:
Q  56 agagaataaaaacacatgtgagtatgagaaagaggatcgttccaaaaattgtcaaaaagtgattgttcaaatatcatttctc 137  Q
    ||||||||||||||||||||||||| ||| ||| ||| ||| ||||| |||||||||| ||||||| ||||||||| |||||    
T  31143351 agagaataaaaacacatgtgagtattagagagatgattgtttcaaaagttgtcaaaaaatgattgtacaaatatcacttctc 31143270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 52 - 137
Target Start/End: Original strand, 19623238 - 19623323
Alignment:
Q  52 agagagagaataaaaacacatgtgagtatgagaaagaggatcgttccaaaaattgtcaaaaagtgattgttcaaatatcatttctc 137  Q
    |||||||||||||||| |||||| ||||||||| |||  || |||  |||| || ||||||||||||||| |||||||||||||||    
T  19623238 agagagagaataaaaagacatgtaagtatgagagagattattgttttaaaagttatcaaaaagtgattgtacaaatatcatttctc 19623323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 52 - 121
Target Start/End: Complemental strand, 6977015 - 6976946
Alignment:
Q  52 agagagagaataaaaacacatgtgagtatgagaaagaggatcgttccaaaaattgtcaaaaagtgattgt 121  Q
    ||||||||||||||||| ||||||||||||| | ||||| | |||  |||| ||||||||||||||||||    
T  6977015 agagagagaataaaaacgcatgtgagtatgatagagagggttgttttaaaagttgtcaaaaagtgattgt 6976946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 53 - 136
Target Start/End: Complemental strand, 3282616 - 3282534
Alignment:
Q  53 gagagagaataaaaacacatgtgagtatgagaaagaggatcgttccaaaaattgtcaaaaagtgattgttcaaatatcatttct 136  Q
    ||||||||||||||| ||||||||||||||||||||  || ||| ||||| |||||||||| |  || | ||||||||||||||    
T  3282616 gagagagaataaaaa-acatgtgagtatgagaaagataattgtttcaaaagttgtcaaaaaatacttatacaaatatcatttct 3282534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 138
Target Start/End: Original strand, 39284655 - 39284739
Alignment:
Q  52 agagagagaataaaaacacatgtgagtatgagaaagaggatcgttccaaaaattgtcaaaaagtgattgttcaaatatcatttctca 138  Q
    ||||||| |||||||| |||| ||||||||||| ||||  | ||| ||||| |||||||||||||| | | ||||||||||||||||    
T  39284655 agagagataataaaaatacatatgagtatgagagagag--ttgtttcaaaagttgtcaaaaagtgaatatacaaatatcatttctca 39284739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 137
Target Start/End: Complemental strand, 39901677 - 39901591
Alignment:
Q  50 gaagagagagaataaaaacacatgtgagtatgagaaagaggatcgttccaaaaattgtcaaaaagtgattgttcaaatatcatttctc 137  Q
    |||||||| |||||||  ||||||| ||||||||| |||   | |||||||||||| ||||||| ||||||| |||||||||||||||    
T  39901677 gaagagagtgaataaat-cacatgttagtatgagatagaaagttgttccaaaaattatcaaaaaatgattgtacaaatatcatttctc 39901591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 53 - 135
Target Start/End: Complemental strand, 41851027 - 41850945
Alignment:
Q  53 gagagagaataaaaacacatgtgagtatgagaaagaggatcgttccaaaaattgtcaaaaagtgattgttcaaatatcatttc 135  Q
    ||||||| ||||||||||| ||||||||||||  |||| | ||| ||||| |||||||||  || |||| |||||||||||||    
T  41851027 gagagaggataaaaacacaagtgagtatgagagggagggttgtttcaaaagttgtcaaaatatggttgtacaaatatcatttc 41850945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 51 - 133
Target Start/End: Original strand, 47187505 - 47187587
Alignment:
Q  51 aagagagagaataaaaacacatgtgagtatgagaaagaggatcgttccaaaaattgtcaaaaagtgattgttcaaatatcatt 133  Q
    |||||| ||||| ||||||||||| ||||||||| | ||| | ||| ||||| |||| ||||||| ||||| |||||||||||    
T  47187505 aagagaaagaattaaaacacatgtaagtatgagagaaagggttgtttcaaaagttgtgaaaaagtaattgtacaaatatcatt 47187587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 134
Target Start/End: Complemental strand, 11323994 - 11323912
Alignment:
Q  50 gaagagagagaataaaaacacatgtgagtatgagaaagaggatcgttccaaaaattgtcaaaaagtgattgttcaaatatcattt 134  Q
    ||||||||||||||||||||||||  ||||||||| ||||  | ||  ||||| |||| |||||||| |||| ||||||||||||    
T  11323994 gaagagagagaataaaaacacatggaagtatgagagagag--ttgtatcaaaagttgttaaaaagtggttgtacaaatatcattt 11323912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 137
Target Start/End: Original strand, 41448163 - 41448247
Alignment:
Q  50 gaagagagagaataaaaacacatgtgagtatgagaaagaggatcgttccaaaaattgtcaaaaagtgattgttcaaatatcatttctc 137  Q
    |||||||||||||||||   ||||||||||||||| ||||| | ||| ||||| ||||  |||| || |||| |||||||||||||||    
T  41448163 gaagagagagaataaaa---catgtgagtatgagagagagggttgtttcaaaagttgtttaaaaatggttgtacaaatatcatttctc 41448247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 100 - 139
Target Start/End: Original strand, 9719475 - 9719514
Alignment:
Q  100 aaaattgtcaaaaagtgattgttcaaatatcatttctcat 139  Q
    ||||||||||||||||| |||| |||||||||||||||||    
T  9719475 aaaattgtcaaaaagtggttgtacaaatatcatttctcat 9719514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 137
Target Start/End: Complemental strand, 19961971 - 19961932
Alignment:
Q  98 caaaaattgtcaaaaagtgattgttcaaatatcatttctc 137  Q
    ||||||||||| ||||||| ||||||||||||||||||||    
T  19961971 caaaaattgtctaaaagtggttgttcaaatatcatttctc 19961932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 137
Target Start/End: Original strand, 41443223 - 41443262
Alignment:
Q  98 caaaaattgtcaaaaagtgattgttcaaatatcatttctc 137  Q
    ||||| ||||||||||||||| ||||||||||||||||||    
T  41443223 caaaagttgtcaaaaagtgatcgttcaaatatcatttctc 41443262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 138
Target Start/End: Complemental strand, 9753267 - 9753229
Alignment:
Q  100 aaaattgtcaaaaagtgattgttcaaatatcatttctca 138  Q
    |||||||||| ||| ||||||||||||||||||||||||    
T  9753267 aaaattgtcacaaaatgattgttcaaatatcatttctca 9753229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 84
Target Start/End: Original strand, 32622350 - 32622384
Alignment:
Q  50 gaagagagagaataaaaacacatgtgagtatgaga 84  Q
    |||||||||||||||| ||||||||||||||||||    
T  32622350 gaagagagagaataaatacacatgtgagtatgaga 32622384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 138
Target Start/End: Complemental strand, 46574236 - 46574149
Alignment:
Q  50 gaagagagagaataaaaacaca-tgtgagtatgagaaagaggatcgttccaaaaattgtcaaaaagtgattgttcaaatatcatttctca 138  Q
    ||||||||||||||| | || | ||||||||||||| ||||| | ||||  |||| ||||| ||| ||| ||||||||||||||||||||    
T  46574236 gaagagagagaataagaccataatgtgagtatgagagagagggttgttc--aaaagtgtcacaaaatgaatgttcaaatatcatttctca 46574149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 104 - 141
Target Start/End: Original strand, 24256798 - 24256834
Alignment:
Q  104 ttgtcaaaaagtgattgttcaaatatcatttctcatag 141  Q
    |||||||||| |||||||||||||||||||||||||||    
T  24256798 ttgtcaaaaa-tgattgttcaaatatcatttctcatag 24256834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 138
Target Start/End: Complemental strand, 33389047 - 33389007
Alignment:
Q  98 caaaaattgtcaaaaagtgattgttcaaatatcatttctca 138  Q
    ||||||||||  ||||||| |||||||||||||||||||||    
T  33389047 caaaaattgtttaaaagtggttgttcaaatatcatttctca 33389007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 82
Target Start/End: Original strand, 46092943 - 46092975
Alignment:
Q  50 gaagagagagaataaaaacacatgtgagtatga 82  Q
    |||||||||||||||||||| ||||||||||||    
T  46092943 gaagagagagaataaaaacatatgtgagtatga 46092975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 5e-18; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 50 - 136
Target Start/End: Original strand, 1922409 - 1922495
Alignment:
Q  50 gaagagagagaataaaaacacatgtgagtatgagaaagaggatcgttccaaaaattgtcaaaaagtgattgttcaaatatcatttct 136  Q
    ||||||||| ||||| |||| |||||||||||||| ||||| | ||  |||||||| ||||||||||||||| ||||||||||||||    
T  1922409 gaagagagaaaataataacatatgtgagtatgagagagagggttgtcacaaaaattatcaaaaagtgattgtacaaatatcatttct 1922495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 53 - 137
Target Start/End: Original strand, 35883594 - 35883678
Alignment:
Q  53 gagagagaataaaaacacatgtgagtatgagaaagaggatcgttccaaaaattgtcaaaaagtgattgttcaaatatcatttctc 137  Q
    |||||||||||||||||||||||||||||||| | | | | ||| ||||| |||||||||| | ||||| |||||||||||||||    
T  35883594 gagagagaataaaaacacatgtgagtatgagagatatggttgtttcaaaagttgtcaaaaaataattgtacaaatatcatttctc 35883678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 50 - 139
Target Start/End: Complemental strand, 28501534 - 28501445
Alignment:
Q  50 gaagagagagaataaaaacacatgtgagtatgagaaagaggatcgttccaaaaattgtcaaaaagtgattgttcaaatatcatttctcat 139  Q
    ||||||||||||| ||||||||| ||| ||||||| ||||| | ||||||||| |||||||||| || ||||  |||||||||| |||||    
T  28501534 gaagagagagaattaaaacacatctgaatatgagagagagggtggttccaaaagttgtcaaaaaatggttgtataaatatcattcctcat 28501445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 50 - 115
Target Start/End: Original strand, 49804919 - 49804984
Alignment:
Q  50 gaagagagagaataaaaacacatgtgagtatgagaaagaggatcgttccaaaaattgtcaaaaagt 115  Q
    ||||||||||||| ||||||||||| ||||||||||||| |||  || ||||| ||||||||||||    
T  49804919 gaagagagagaattaaaacacatgtaagtatgagaaagaagattatttcaaaagttgtcaaaaagt 49804984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 98 - 138
Target Start/End: Original strand, 5771780 - 5771820
Alignment:
Q  98 caaaaattgtcaaaaagtgattgttcaaatatcatttctca 138  Q
    |||||||| ||||||||||||||||||||||||||||||||    
T  5771780 caaaaattatcaaaaagtgattgttcaaatatcatttctca 5771820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 98 - 137
Target Start/End: Complemental strand, 26159480 - 26159441
Alignment:
Q  98 caaaaattgtcaaaaagtgattgttcaaatatcatttctc 137  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  26159480 caaaaattgtcaaaaaatgattgttcaaatatcatttctc 26159441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 104 - 137
Target Start/End: Complemental strand, 4857955 - 4857922
Alignment:
Q  104 ttgtcaaaaagtgattgttcaaatatcatttctc 137  Q
    ||||||||||||||||||||||||||||||||||    
T  4857955 ttgtcaaaaagtgattgttcaaatatcatttctc 4857922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 118
Target Start/End: Original strand, 2279306 - 2279374
Alignment:
Q  50 gaagagagagaataaaaacacatgtgagtatgagaaagaggatcgttccaaaaattgtcaaaaagtgat 118  Q
    |||||||||||||||||||||||||||  |||||| |||   | ||| ||||| |||||||||||||||    
T  2279306 gaagagagagaataaaaacacatgtgaacatgagagagatagttgtttcaaaagttgtcaaaaagtgat 2279374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 134
Target Start/End: Original strand, 51231290 - 51231374
Alignment:
Q  50 gaagagagagaataaaaacacatgtgagtatgagaaagaggatcgttccaaaaattgtcaaaaagtgattgttcaaatatcattt 134  Q
    ||||| |||| || |||| |||||||||||||||| ||||  | || |||||| |||| |||||||| |||| ||||||||||||    
T  51231290 gaagaaagaggatgaaaatacatgtgagtatgagagagagagttgtgccaaaagttgttaaaaagtggttgtacaaatatcattt 51231374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 137
Target Start/End: Complemental strand, 27742656 - 27742617
Alignment:
Q  98 caaaaattgtcaaaaagtgattgttcaaatatcatttctc 137  Q
    ||||| ||||||||||||| ||||||||||||||||||||    
T  27742656 caaaagttgtcaaaaagtggttgttcaaatatcatttctc 27742617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 137
Target Start/End: Complemental strand, 48858862 - 48858823
Alignment:
Q  98 caaaaattgtcaaaaagtgattgttcaaatatcatttctc 137  Q
    ||||| ||||||||||||| ||||||||||||||||||||    
T  48858862 caaaagttgtcaaaaagtggttgttcaaatatcatttctc 48858823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 84
Target Start/End: Complemental strand, 3904267 - 3904237
Alignment:
Q  54 agagagaataaaaacacatgtgagtatgaga 84  Q
    |||||||||||||||||||||||||||||||    
T  3904267 agagagaataaaaacacatgtgagtatgaga 3904237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 138
Target Start/End: Complemental strand, 37690466 - 37690428
Alignment:
Q  100 aaaattgtcaaaaagtgattgttcaaatatcatttctca 138  Q
    |||||||||| ||||||||||| ||||||||||||||||    
T  37690466 aaaattgtcataaagtgattgtacaaatatcatttctca 37690428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 100 - 137
Target Start/End: Original strand, 8828156 - 8828192
Alignment:
Q  100 aaaattgtcaaaaagtgattgttcaaatatcatttctc 137  Q
    |||||||||||||| |||||||||||||||||||||||    
T  8828156 aaaattgtcaaaaa-tgattgttcaaatatcatttctc 8828192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 98 - 139
Target Start/End: Original strand, 19947773 - 19947814
Alignment:
Q  98 caaaaattgtcaaaaagtgattgttcaaatatcatttctcat 139  Q
    ||||| |||||||||| || ||||||||||||||||||||||    
T  19947773 caaaagttgtcaaaaaatggttgttcaaatatcatttctcat 19947814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 71 - 144
Target Start/End: Original strand, 36577417 - 36577490
Alignment:
Q  71 atgtgagtatgagaaagaggatcgttccaaaaattgtcaaaaagtgattgttcaaatatcatttctcatagttt 144  Q
    |||||||||||||| |||   | ||| ||||| |||||| ||| ||  ||||||||||||||||||||||||||    
T  36577417 atgtgagtatgagagagaaagttgttgcaaaagttgtcacaaaatggatgttcaaatatcatttctcatagttt 36577490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 100 - 137
Target Start/End: Original strand, 47398474 - 47398511
Alignment:
Q  100 aaaattgtcaaaaagtgattgttcaaatatcatttctc 137  Q
    |||||||||||||| ||| |||||||||||||||||||    
T  47398474 aaaattgtcaaaaaatgaatgttcaaatatcatttctc 47398511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 139
Target Start/End: Complemental strand, 2362386 - 2362354
Alignment:
Q  107 tcaaaaagtgattgttcaaatatcatttctcat 139  Q
    ||||||||||||||| |||||||||||||||||    
T  2362386 tcaaaaagtgattgtacaaatatcatttctcat 2362354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 139
Target Start/End: Complemental strand, 3672406 - 3672339
Alignment:
Q  71 atgtgagtatgagaaagaggatcgttccaaaaattgtcaaaaagtgattgttcaaatatcatttctcat 139  Q
    |||||||||||||| |||| || ||  ||||| |||||||||| |||| || |||||||||||||||||    
T  3672406 atgtgagtatgagatagag-attgtcacaaaagttgtcaaaaattgatggtacaaatatcatttctcat 3672339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 139
Target Start/End: Complemental strand, 35136910 - 35136842
Alignment:
Q  71 atgtgagtatgagaaagaggatcgttccaaaaattgtcaaaaagtgattgttcaaatatcatttctcat 139  Q
    ||||||||||||||||||   | ||| ||||| |||||| ||| ||  |||||||||||||||||||||    
T  35136910 atgtgagtatgagaaagaaagttgttgcaaaagttgtcacaaaatggatgttcaaatatcatttctcat 35136842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 52 - 113
Target Start/End: Original strand, 11539 - 11600
Alignment:
Q  52 agagagagaataaaaacacatgtgagtatgagaaagaggatcgttccaaaaattgtcaaaaa 113  Q
    ||||||||||||||||||||| ||||||||||| |||| || ||| ||||| ||||||||||    
T  11539 agagagagaataaaaacacatttgagtatgagagagagaattgtttcaaaagttgtcaaaaa 11600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 99 - 140
Target Start/End: Complemental strand, 8510 - 8469
Alignment:
Q  99 aaaaattgtcaaaaagtgattgttcaaatatcatttctcata 140  Q
    ||||||||| ||||| ||||||||||||||||||||||||||    
T  8510 aaaaattgttaaaaaatgattgttcaaatatcatttctcata 8469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 137
Target Start/End: Original strand, 49337 - 49424
Alignment:
Q  51 aagagagagaataaaaacacatgtgagtatgagaaagag-gatcgttccaaaaattgtc-aaaaagtgattgttcaaatatcatttctc 137  Q
    |||||||||||||||||||||||| |||||| ||  ||| ||| ||| ||||||||||| ||||| || |||| |||||||||||||||    
T  49337 aagagagagaataaaaacacatgtcagtatgtgagggagagat-gtttcaaaaattgtcaaaaaaatggttgtacaaatatcatttctc 49424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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