View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15574_low_18 (Length: 222)
Name: NF15574_low_18
Description: NF15574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15574_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 184; Significance: 1e-100; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 19 - 206
Target Start/End: Original strand, 55653480 - 55653667
Alignment:
| Q |
19 |
aagaggcatattccagtagacaccacaaaaaccattgtaagtatacaagacacaacccttggcaataattcacgttttggttcaaataccttcttatacg |
118 |
Q |
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| T |
55653480 |
aagaggcatattccagtagacaccacaaaaaccattgtaagtatacaagacacaacccttggcaataattcacgttttggttcaaataccttcttatacg |
55653579 |
T |
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| Q |
119 |
caatttgaagagccaaacacagcccatggatgaagaaaaagcacattgaatcccaacatggttcccaagcttcccatgtatccttctt |
206 |
Q |
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| T |
55653580 |
caatttgaagagccaaacacaccccatggatgaagaaaaagcacattgaatcccaacatggttcccaagcttcccatgtatccttctt |
55653667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 50 - 197
Target Start/End: Original strand, 55662071 - 55662219
Alignment:
| Q |
50 |
ccattgtaagtatacaagacacaacccttggcaataattcacgttttggttcaaataccttcttatacgcaatttgaagagccaaacaca-gcccatgga |
148 |
Q |
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| T |
55662071 |
ccattgtaagtatacaagacacaacccttggcaataattcacctttcggtttgaataccttcttatattcaatttgaagagccaaacacacccccatgga |
55662170 |
T |
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| Q |
149 |
tgaagaaaaagcacattgaatcccaacatggttcccaagcttcccatgt |
197 |
Q |
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| T |
55662171 |
tgaagaagaagcacattgaatcccaatatggctcccaagcctcccatgt |
55662219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 32 - 197
Target Start/End: Original strand, 4476698 - 4476863
Alignment:
| Q |
32 |
cagtagacaccacaaaaaccattgtaagtatacaagacacaacccttggcaataattcacgttttggttcaaataccttcttatacgcaatttgaagagc |
131 |
Q |
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| T |
4476698 |
cagtagacacaacgaaggccattgtgagggtacaagacacaacccttggtaataactggtgttttggtttgaagatcttcttgtatgcaatttcaagagc |
4476797 |
T |
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| Q |
132 |
caaacacagcccatggatgaagaaaaagcacattgaatcccaacatggttcccaagcttcccatgt |
197 |
Q |
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| T |
4476798 |
cacacacaccccatggatgaaaaagaaacacattgaatcccaacatggttcccaagcttcccatgt |
4476863 |
T |
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