View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15574_low_3 (Length: 468)
Name: NF15574_low_3
Description: NF15574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15574_low_3 |
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| [»] scaffold0026 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 175; Significance: 5e-94; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 10 - 448
Target Start/End: Original strand, 35387353 - 35387816
Alignment:
| Q |
10 |
aggatgttgggaaggagacaaactctggatcactgcttagtttgagcggcatcgaaccaccactggagtggtcacatcaggaatttaatgtgacaccatt |
109 |
Q |
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| T |
35387353 |
aggaggttggtaaggagacaaactttggatcgctgcttagtttgagcgtcatcgaaccaccactagagcaatcacatcaggaatttcatgtgacgccatt |
35387452 |
T |
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| Q |
110 |
cgcaaaatgcatagtacgaaaatctgaaggtcacgatgaatc-------ggtggtagcatttgagacgatcattgatgcagcaactaagacacagagaag |
202 |
Q |
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| T |
35387453 |
cacaaaatgcatggtacaaaaatctgcaggtcacaatgaatcatgaatcggtggtagtgttttagacaatcatcgatgcagcaactaagacacaaatatg |
35387552 |
T |
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| Q |
203 |
tgagaaggagagaaggattgttaccgatc------------------caccagatccgtcttcatcaaaatcaccaccgccagtgtcgctagattctggt |
284 |
Q |
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| T |
35387553 |
tgagaaggagagaaggattgttcccgatctgcaccctccaccggagacaccagatccgccttcatcacaatcaccaccaccagagtcgctagactctagt |
35387652 |
T |
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| Q |
285 |
caacctgtgacggctctccgatagagagaactgccacccaaacaatcggattggtcgtcttcagatgcaacaagagacaagacccgatccaaggaggaag |
384 |
Q |
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| T |
35387653 |
caacctgcaacagatctccaacagagagaaccgccacccaaaccacaagattggttgtcttcatatgcaacaagagacaggccccgatccaaggaggaag |
35387752 |
T |
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| Q |
385 |
ggaaagagccaacgatgaatactcagcacataccactgccgctgctatggccggaaccgcctga |
448 |
Q |
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| T |
35387753 |
ggaaagagccaacaattaatactcagcacataccaccgccgctgaaatggccggaaccgcctga |
35387816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0026 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: scaffold0026
Description:
Target: scaffold0026; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 347 - 447
Target Start/End: Original strand, 79733 - 79833
Alignment:
| Q |
347 |
agatgcaacaagagacaagacccgatccaaggaggaagggaaagagccaacgatgaatactcagcacataccactgccgctgctatggccggaaccgcct |
446 |
Q |
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| T |
79733 |
agatgcaacaagagacaagacccgatccaaggaggaaaggaaagagccaacaatgaatactcagcacataccacagccgctgctatggacggaaccgcct |
79832 |
T |
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| Q |
447 |
g |
447 |
Q |
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| T |
79833 |
g |
79833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 171 - 234
Target Start/End: Complemental strand, 20056587 - 20056524
Alignment:
| Q |
171 |
atcattgatgcagcaactaagacacagagaagtgagaaggagagaaggattgttaccgatccac |
234 |
Q |
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| T |
20056587 |
atcatcgatgaagcaactgagacacaaagaagtgataaggagagaaggatttttaccgatccac |
20056524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 231 - 267
Target Start/End: Complemental strand, 20056509 - 20056473
Alignment:
| Q |
231 |
ccaccagatccgtcttcatcaaaatcaccaccgccag |
267 |
Q |
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| T |
20056509 |
ccaccagatccgccttcatcacaatcaccaccgccag |
20056473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 128 - 216
Target Start/End: Complemental strand, 8898462 - 8898374
Alignment:
| Q |
128 |
aaaatctgaaggtcacgatgaatcggtggtagcatttgagacgatcattgatgcagcaactaagacacagagaagtgagaaggagagaa |
216 |
Q |
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| T |
8898462 |
aaaatctgaagttcttaatgaatcggtggtagtaattgagacaagcatcgatgcaataattgagacacagagaagtgagaaggagagaa |
8898374 |
T |
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