View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15574_low_4 (Length: 396)
Name: NF15574_low_4
Description: NF15574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15574_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 15 - 380
Target Start/End: Original strand, 36916207 - 36916565
Alignment:
| Q |
15 |
tatgtattcatttcatttgtattgttcatgtgtggttaacacaaattcaatacaacccatttttaaataattacaaaatggattacacgaataacagtag |
114 |
Q |
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| T |
36916207 |
tatgtattcatttcatttgtattgttcatgtgtgattaacacaaattcaatacaacccatttttaaataattacaaaatggattacacgaataacagtag |
36916306 |
T |
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| Q |
115 |
ggggagtcattgttctttctttgatgaaataaaggggaggtggtatatatttaaataaaccaaggagaggttagagcaacttcaatgatgcttttaataa |
214 |
Q |
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| T |
36916307 |
ggggagtcattgttctttctttgatgaaatagaggggaggtggtatatatttaaataaaccaaggagaggttagagcaacttcaatgatgcttttaataa |
36916406 |
T |
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| Q |
215 |
agaaacaaggtaagtgtattttgatattagatggtgagtatgttagaattacgatgatccgctataattttatagaaattacaaagtgtagttnnnnnnn |
314 |
Q |
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| T |
36916407 |
agaaacaacgtaagtgtattttgatattagatggtgagtatgttagaattacgatgatccgctataattttatagaaattacaaagtgtagttaaaaaaa |
36916506 |
T |
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| Q |
315 |
nnnttacggtggatcgtcgtgattctgatatatccaccgtaatatcaaatatagactaaattatct |
380 |
Q |
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| T |
36916507 |
aaactacg-------gtcgtgattatgatatatccactgtaatattaaatatagactaaattatct |
36916565 |
T |
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Back To:
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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 328 - 373
Target Start/End: Complemental strand, 37853601 - 37853556
Alignment:
| Q |
328 |
tcgtcgtgattctgatatatccaccgtaatatcaaatatagactaa |
373 |
Q |
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| T |
37853601 |
tcgtcgtgattctaatatatctaccgtgatatcaaacatagactaa |
37853556 |
T |
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