View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15574_low_8 (Length: 304)
Name: NF15574_low_8
Description: NF15574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15574_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 264; Significance: 1e-147; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 19 - 294
Target Start/End: Original strand, 45283426 - 45283701
Alignment:
| Q |
19 |
cattttcctttccatactcagtggtgagcctttcactcatgttaaaggccttaatgacattgtcggtggctgccttcacggaggctgctatgtatgcctt |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45283426 |
cattttcctttccatactcagtggtgagcctttcactcatgttaaaggccttaatgacattgtcggtggctgccttcacggaggctgctatgtatgcctt |
45283525 |
T |
|
| Q |
119 |
cgggtcagcggcatcggcgccatgcacagagctaagagtttcatgacagagtttttggtcttgtgcgttttggcacataattctaagatttctttgttga |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
45283526 |
cgggtcagcggcatcggcgccatgcacagagctaagagtttcatgacagagtttttggtcttgtgagttttggcacataattctaagatttctttgttga |
45283625 |
T |
|
| Q |
219 |
gtttgaacctgggggtcttcaccatttttgcgaacagcgacaacaacaccgatggcaacacctacaacgagaataa |
294 |
Q |
| |
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|||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
45283626 |
gtttgaacctcggggtcttcaccatttttgcgaacggcgacaacaacaccgatggcaacacctacaacgagaataa |
45283701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 19 - 294
Target Start/End: Original strand, 45271652 - 45271927
Alignment:
| Q |
19 |
cattttcctttccatactcagtggtgagcctttcactcatgttaaaggccttaatgacattgtcggtggctgccttcacggaggctgctatgtatgcctt |
118 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |
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| T |
45271652 |
catttttctttccatactcagtggtgagcctttcactcatgttaaaggccttaatgacattgtcagtggctgccttcacggctgctgctatgtatgcctt |
45271751 |
T |
|
| Q |
119 |
cgggtcagcggcatcggcgccatgcacagagctaagagtttcatgacagagtttttggtcttgtgcgttttggcacataattctaagatttctttgttga |
218 |
Q |
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|
||||||||||||||||||||| |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45271752 |
agggtcagcggcatcggcgccacgcacagagctaagagtgtcatgacagagtttctggtcttgtgcgttttggcacataattctaagatttctttgttga |
45271851 |
T |
|
| Q |
219 |
gtttgaacctgggggtcttcaccatttttgcgaacagcgacaacaacaccgatggcaacacctacaacgagaataa |
294 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |
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| T |
45271852 |
gtttgaaccttagggtcttcaccatttttgcgaatgtcgacaacaacaccgatgataacacctacaacgagaataa |
45271927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 19 - 294
Target Start/End: Original strand, 45275185 - 45275460
Alignment:
| Q |
19 |
cattttcctttccatactcagtggtgagcctttcactcatgttaaaggccttaatgacattgtcggtggctgccttcacggaggctgctatgtatgcctt |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||| |||||||||||||||||| |
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|
| T |
45275185 |
cattttcctttccatactcagtggtgagcctttcactcatgttaaaggcgttcatgacattgtcagtggctgccttcacggcggctgctatgtatgcctt |
45275284 |
T |
|
| Q |
119 |
cgggtcagcggcatcggcgccatgcacagagctaagagtttcatgacagagtttttggtcttgtgcgttttggcacataattctaagatttctttgttga |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45275285 |
agggtcagcggcatcggcgccatgcacagagctaagagtttcatggcagagtttctggtcttgtgcgttttggcacataattctaagatttctttgttga |
45275384 |
T |
|
| Q |
219 |
gtttgaacctgggggtcttcaccatttttgcgaacagcgacaacaacaccgatggcaacacctacaacgagaataa |
294 |
Q |
| |
|
|||||||||| ||||||| |||||||||| ||| ||||||||||||||||| |||||||||||||||||||| |
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|
| T |
45275385 |
gtttgaacctcagggtctttaccatttttgtgaatgtcgacaacaacaccgatgataacacctacaacgagaataa |
45275460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 23 - 294
Target Start/End: Original strand, 45294818 - 45295089
Alignment:
| Q |
23 |
ttcctttccatactcagtggtgagcctttcactcatgttaaaggccttaatgacattgtcggtggctgccttcacggaggctgctatgtatgccttcggg |
122 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| || | |||||||||||||||||| ||| |
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| T |
45294818 |
ttcctttccatactcagtggtgagcctgtcactcatgttaaaggccttaatgacattgtcagtggctgcctttacagcggctgctatgtatgccttaggg |
45294917 |
T |
|
| Q |
123 |
tcagcggcatcggcgccatgcacagagctaagagtttcatgacagagtttttggtcttgtgcgttttggcacataattctaagatttctttgttgagttt |
222 |
Q |
| |
|
|||||||| ||||||||| ||||||||||||| |||||||| |||||||||||||| | ||| ||||||||||||| | |||| |||||||||||||| |
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| T |
45294918 |
tcagcggcgtcggcgccacgcacagagctaagtgtttcatggcagagtttttggtcatctgcattttggcacataacttgaagagatctttgttgagttt |
45295017 |
T |
|
| Q |
223 |
gaacctgggggtcttcaccatttttgcgaacagcgacaacaacaccgatggcaacacctacaacgagaataa |
294 |
Q |
| |
|
||||| |||||||||||||||||| |||||||| ||| || ||||||||||||||||||||||| |||| |
|
|
| T |
45295018 |
taacctcagggtcttcaccatttttgtgaacagcgcaaaccacgccgatggcaacacctacaacgaggataa |
45295089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 23 - 294
Target Start/End: Original strand, 45303778 - 45304049
Alignment:
| Q |
23 |
ttcctttccatactcagtggtgagcctttcactcatgttaaaggccttaatgacattgtcggtggctgccttcacggaggctgctatgtatgccttcggg |
122 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| || | |||||||||||||||||| ||| |
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| T |
45303778 |
ttcctttccatactcagtggtgagcctgtcactcatgttaaaggccttaatgacattgtcagtggctgcctttacagcggctgctatgtatgccttaggg |
45303877 |
T |
|
| Q |
123 |
tcagcggcatcggcgccatgcacagagctaagagtttcatgacagagtttttggtcttgtgcgttttggcacataattctaagatttctttgttgagttt |
222 |
Q |
| |
|
|||||||| ||||||||| ||||||||||||| |||||||| |||||||||||||| | ||| ||||||||||||| | |||| |||||||||||||| |
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|
| T |
45303878 |
tcagcggcgtcggcgccacgcacagagctaagtgtttcatggcagagtttttggtcatctgcattttggcacataacttgaagagatctttgttgagttt |
45303977 |
T |
|
| Q |
223 |
gaacctgggggtcttcaccatttttgcgaacagcgacaacaacaccgatggcaacacctacaacgagaataa |
294 |
Q |
| |
|
||||| |||||||||||||||||| |||||||| ||| || ||||||||||||||||||||||| |||| |
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|
| T |
45303978 |
taacctcagggtcttcaccatttttgtgaacagcgcaaaccacgccgatggcaacacctacaacgaggataa |
45304049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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