View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15574_low_9 (Length: 286)
Name: NF15574_low_9
Description: NF15574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15574_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 90 - 271
Target Start/End: Original strand, 1640998 - 1641174
Alignment:
| Q |
90 |
cttttgattgtatctgccacctttaataatgaatggacaaaggtttatcatgtatccccaaaatgacgtgtttacacagtttctaaattttctacggaac |
189 |
Q |
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| T |
1640998 |
cttttgattgtatctgccacctttaataatga-----caaagttttatcatgtatccccaaaatgacgtgtttacacagtttctaaattttctacggaac |
1641092 |
T |
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| Q |
190 |
aagtcttggacttaatcatattctgattcgccatttgaccacaaagaacaaatatcattccaccaagttcaaagattgattt |
271 |
Q |
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||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1641093 |
aagtctttgactcaatcatattctgattcgccatttgaccacaaagaacaaatatcattccaccaagttcaaagattgattt |
1641174 |
T |
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