View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15575_high_1 (Length: 583)
Name: NF15575_high_1
Description: NF15575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15575_high_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 557; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 557; E-Value: 0
Query Start/End: Original strand, 1 - 574
Target Start/End: Original strand, 42205295 - 42205874
Alignment:
| Q |
1 |
tccattccttgcataaagggcacctttgtccagccatatatatggaagattgcaaacactttttgcaaaaactacaaaagtgtatattcttaattagaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42205295 |
tccattccttgcataaagggcacctttgtccagccatatatatggaagattgcaaacactttttgcaaaaactacaaaagtgtatattcttaattagaaa |
42205394 |
T |
|
| Q |
101 |
agttagaagttgatgcacaataaactaaattgagtatgagtcatgacaaatgtctaacatagatataaaatcaacaatatgatacttgaacattaatcgt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42205395 |
agttagaagttgatgcacaataaactaaattgagtatgagtcatgacaaatgtctaacatagatataaaatcaacaatatgatacttgaacattaatcgt |
42205494 |
T |
|
| Q |
201 |
tttcatacactcattcaacaatgatcattatttttctatctctcttttcctatcacatgattaacatatcatatctatcaaagtgtcgatggagacatgg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42205495 |
tttcatacactcattcaacaatgatcattatttttctatctctcttttcctatcacatgattaacatatcatatctatcaaagtgtcgatggagacatgg |
42205594 |
T |
|
| Q |
301 |
tca------gtgtgtgtgtgatacgcacctgtggccgcaacaagtagtacatggttcaaagtatatctccaaacaaatctgccagaatgaataaaaaatc |
394 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42205595 |
tcagtgtgtgtgtgtgtgtgatacgcacctgtggccgcaacaagtagtacatggttcaaagtatatctccaaacaaatctgccagaatgaataaaaaatc |
42205694 |
T |
|
| Q |
395 |
agcattgtaacttacatatcaacaatgtataaagctagattagaaaaaacatcacaaggatttcattaccggacatgaaaacttctcggtgagttcatcg |
494 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42205695 |
agcattgtaacttacatatcaacaatgtataaagctagattagaaaaaacatcacaaggatttcattaccggacatgaaaacttctcggtgagttcatcg |
42205794 |
T |
|
| Q |
495 |
gtgtaagggataacagcggacgacaaatcagaactcatcttgacgaaatttttcagagaaagcgacgtaccttttcttct |
574 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42205795 |
gtgtaagggataacagcggacgacaaatcagaactcatcttgacgaaatttttcagagaaagcgacgtaccttttcttct |
42205874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 557; E-Value: 0
Query Start/End: Original strand, 1 - 574
Target Start/End: Original strand, 42214163 - 42214742
Alignment:
| Q |
1 |
tccattccttgcataaagggcacctttgtccagccatatatatggaagattgcaaacactttttgcaaaaactacaaaagtgtatattcttaattagaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42214163 |
tccattccttgcataaagggcacctttgtccagccatatatatggaagattgcaaacactttttgcaaaaactacaaaagtgtatattcttaattagaaa |
42214262 |
T |
|
| Q |
101 |
agttagaagttgatgcacaataaactaaattgagtatgagtcatgacaaatgtctaacatagatataaaatcaacaatatgatacttgaacattaatcgt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42214263 |
agttagaagttgatgcacaataaactaaattgagtatgagtcatgacaaatgtctaacatagatataaaatcaacaatatgatacttgaacattaatcgt |
42214362 |
T |
|
| Q |
201 |
tttcatacactcattcaacaatgatcattatttttctatctctcttttcctatcacatgattaacatatcatatctatcaaagtgtcgatggagacatgg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42214363 |
tttcatacactcattcaacaatgatcattatttttctatctctcttttcctatcacatgattaacatatcatatctatcaaagtgtcgatggagacatgg |
42214462 |
T |
|
| Q |
301 |
tca------gtgtgtgtgtgatacgcacctgtggccgcaacaagtagtacatggttcaaagtatatctccaaacaaatctgccagaatgaataaaaaatc |
394 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42214463 |
tcagtgtgtgtgtgtgtgtgatacgcacctgtggccgcaacaagtagtacatggttcaaagtatatctccaaacaaatctgccagaatgaataaaaaatc |
42214562 |
T |
|
| Q |
395 |
agcattgtaacttacatatcaacaatgtataaagctagattagaaaaaacatcacaaggatttcattaccggacatgaaaacttctcggtgagttcatcg |
494 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42214563 |
agcattgtaacttacatatcaacaatgtataaagctagattagaaaaaacatcacaaggatttcattaccggacatgaaaacttctcggtgagttcatcg |
42214662 |
T |
|
| Q |
495 |
gtgtaagggataacagcggacgacaaatcagaactcatcttgacgaaatttttcagagaaagcgacgtaccttttcttct |
574 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42214663 |
gtgtaagggataacagcggacgacaaatcagaactcatcttgacgaaatttttcagagaaagcgacgtaccttttcttct |
42214742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 238 - 280
Target Start/End: Complemental strand, 31720948 - 31720906
Alignment:
| Q |
238 |
atctctcttttcctatcacatgattaacatatcatatctatca |
280 |
Q |
| |
|
|||||||||| |||||||||| |||||||||||| |||||||| |
|
|
| T |
31720948 |
atctctctttacctatcacatcattaacatatcacatctatca |
31720906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University