View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15575_high_14 (Length: 414)
Name: NF15575_high_14
Description: NF15575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15575_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 376; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 13 - 400
Target Start/End: Complemental strand, 42695931 - 42695544
Alignment:
| Q |
13 |
aatatgttatactagtttcaaacgttgcaatatatgcaccagcatagaaatattgctttggtagagtacaaaaaacacactagaggttatatataaatgt |
112 |
Q |
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| T |
42695931 |
aatatgttatactagtttcaaacgttgcaatatatgcaccagcatagaaatattgctttagtagagtacaaaaaacacactagtggttatatataaatgt |
42695832 |
T |
|
| Q |
113 |
tctgtagtaataactgaaaagtttaacaactaaagtctgagtaacaaacttcaaactacttgctgacatagttaaactgttttaactaacttgtttaaat |
212 |
Q |
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| T |
42695831 |
tctgtagtaataactgaaaagtttaacaactaaagtctgagtaacaaacttcaaactacttgctgacatagttaaactgttttaactaacttgtttaaat |
42695732 |
T |
|
| Q |
213 |
tcagttaacaagatatacgaaataagaatactcacgtaataaagagagaaacttcataacaaagcaaatattgtagcattagatcgtccagtataaagat |
312 |
Q |
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| T |
42695731 |
tcagttaacaagatatacgaaataagaatactcacgtaataaagagagaaacttcataacaaagcaaatattgtagcattagatcgtccagtataaagat |
42695632 |
T |
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| Q |
313 |
acagtgaaaccagatcacttgcaaagtattccaacttacaccattacttcaaagacataattcagcagagacaacatgtgatgaaact |
400 |
Q |
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| T |
42695631 |
acagtgaaaccagatcacttgcaaagtattccaaattacaccattacttcaaagacataattcagcagagacaacatgtgatgaaact |
42695544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 198 - 389
Target Start/End: Original strand, 41988190 - 41988381
Alignment:
| Q |
198 |
ctaacttgtttaaattcagttaacaagatatacgaaataagaatactcacgtaataaagagagaaacttcataacaaagcaaatattgtagcattagatc |
297 |
Q |
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||||||||| ||| |||||||| |||||| || ||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
41988190 |
ctaacttgtataacttcagttagcaagatctaagaagtaagaatactcgcgtaataaagagacaaacttcataacaaagcaaatattgtagcattagatc |
41988289 |
T |
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| Q |
298 |
gtccagtataaagatacagtgaaaccagatcacttgcaaagtattccaacttacaccattacttcaaagacataattcagcagagacaacat |
389 |
Q |
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|||| | |||||||||| || ||||||| |||| ||||||||||||| ||| | |||||||||||||||||||||||||||||||||||| |
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| T |
41988290 |
ttccaatgtaaagatacaatgcaaccagaccactgacaaagtattccaaattagagcattacttcaaagacataattcagcagagacaacat |
41988381 |
T |
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