View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15575_high_15 (Length: 408)
Name: NF15575_high_15
Description: NF15575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15575_high_15 |
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Alignment Details
Target: chr2 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 8 - 393
Target Start/End: Original strand, 9434024 - 9434409
Alignment:
| Q |
8 |
aagcaaaggtggtgttgaatagcttagcggggtttgacgaagggaaggaagcgattgtggaagaaggtggaattgcggcgcttgtggaagccattgaaga |
107 |
Q |
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| T |
9434024 |
aagcaatggtggtgttgaatagcttagcggggtttgacgaagggaaggaagccattgtggaagaaggtggaattgctgcgcttgtggaagccattgaaga |
9434123 |
T |
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| Q |
108 |
tgggtctgtgaaaggaaaagaatttgctgttttaacacttttgcagctttgtgctgaaagtgttaccaatagaggtttgcttgttagagaaggtgggatt |
207 |
Q |
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| T |
9434124 |
tgggtctgtgaaaggaaaagaatttgctgttttaacacttttgcagctttgtgctgaaagtgttaccaatagaggtttgcttgttagagaaggtgggatt |
9434223 |
T |
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| Q |
208 |
cctcctcttgtcgctctttcgcaaaatggaactcctcgagctaagcataaggtaaatttcaatctctgcattttgcttcatactatatgattcaaaagat |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
9434224 |
cctcctcttgtcgctctttcgcaaaatggaactcctcgagctaagcataaggtaaatttcaatctctgcattttgcttcatactataggattcaaaagat |
9434323 |
T |
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| Q |
308 |
ttattcatatgtatatttgtttagtattgttatgaccacctggttatttaagatatcttgactttgagtgtttgaccctttattct |
393 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
9434324 |
ttattcatatgtatatttgtttagtattgttatgaccacctggttatttaagatatcttgactttgagtgttcgaccctttattct |
9434409 |
T |
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