View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15575_high_16 (Length: 387)
Name: NF15575_high_16
Description: NF15575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15575_high_16 |
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Alignment Details
Target: chr8 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 8 - 371
Target Start/End: Complemental strand, 4937341 - 4936978
Alignment:
| Q |
8 |
cgaagaatatctcatgagagttatctttcgatgatgttaaaactgaacaaacaccattaaaaagttatctattgattgattataggggtttaaaaagcaa |
107 |
Q |
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| T |
4937341 |
cgaaaaatatctcatgagagttatctttcgatgatgttaaaactgaacaaacaccattaaaaagttatctattgaatgattataggggtttaaaaagcac |
4937242 |
T |
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| Q |
108 |
aactcattattctatttctatgtcttattctttaggccaggcccattaagcttcctattaggacccgaccagtaatataaggtgtcaatttgttttagta |
207 |
Q |
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| T |
4937241 |
aactcattattctatttctatgtcttgttctttaggccaggcccattaagcttcctattaggacccaaccagtaatataaggtgtcaatttgttttacta |
4937142 |
T |
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| Q |
208 |
tacaacacaacttttcctctaaaagaaaaaagaaatacaactattatgaatatgaataatgaagttgcaatttgtttttaagtttgtaccacttatttgg |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4937141 |
tacaacacaacttttcctctaaaagaaaaaagaaatacaactattatgaatatgaataatgaagttgcaatttgtttttaagtttgtaccacttatttgg |
4937042 |
T |
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| Q |
308 |
gtgtgttggtggtgttattactctaaaaaatttactcacagatgaaatcttaattggtatgttg |
371 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
4937041 |
gtgtgttggtggtgttattactctaaaaaaattactcacagatgaaatcttaattggtatgttg |
4936978 |
T |
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