View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15575_high_19 (Length: 354)
Name: NF15575_high_19
Description: NF15575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15575_high_19 |
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Alignment Details
Target: chr6 (Bit Score: 303; Significance: 1e-170; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 29 - 339
Target Start/End: Complemental strand, 21378129 - 21377819
Alignment:
| Q |
29 |
acattaaagtatagtcaattttctctagaggaacttgtagaaccagggttcaatagggatcaatcaatcctttatccctagaaaattctcacattatgaa |
128 |
Q |
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| T |
21378129 |
acattaaagtatagtcaattttctctagaggaacttgtagaaccagggttcaatagggatcaatcaatcctttatctctagaaaattctcacattatgaa |
21378030 |
T |
|
| Q |
129 |
acaaactattggccaatcgagggttttctgaagtagtaatagttagatttcccagtttaacaaacgtgtgctttataccctttaaatcataacaatgaaa |
228 |
Q |
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| T |
21378029 |
acaaactattggccaatcgagggttttctgaagtagtaatagttagatttcccagtttaacaaacgtgtgctttataccctttaaatcataacaatgaaa |
21377930 |
T |
|
| Q |
229 |
ctctcacattatgtttggtaaatcctggcttaaagatgacattggcatggttgacataacaaaaccaaacacaacattaatttcttttatttgatatagg |
328 |
Q |
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| T |
21377929 |
ctctcacattatgtttggtaaatcctggcttaaagatgacattggcatggttgacataacaaaaccaaacacaacattaatttcttttatttgatatagg |
21377830 |
T |
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| Q |
329 |
gttagcaatat |
339 |
Q |
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||||| ||||| |
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| T |
21377829 |
gttagtaatat |
21377819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 184 - 311
Target Start/End: Complemental strand, 21371703 - 21371575
Alignment:
| Q |
184 |
tttaacaaacgtgtgctttataccctttaaatcataacaatgaaactctcacattatgtttggtaaatcctggc-ttaaagatgacattggcatggttga |
282 |
Q |
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||||||||| |||| ||||||| || |||||||||| |||||||||||| ||||||||||||||||||||||| ||| | |||||||||||| |||||| |
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| T |
21371703 |
tttaacaaatttgtgttttatacactctaaatcataataatgaaactctcgcattatgtttggtaaatcctggctttagacatgacattggcaaggttga |
21371604 |
T |
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| Q |
283 |
cataacaaaaccaaacacaacattaattt |
311 |
Q |
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| T |
21371603 |
cataataaaaccaaacacaacattaattt |
21371575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 34 - 67
Target Start/End: Complemental strand, 21370947 - 21370914
Alignment:
| Q |
34 |
aaagtatagtcaattttctctagaggaacttgta |
67 |
Q |
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| T |
21370947 |
aaagtatagtcaattttctctagaggaacttgta |
21370914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 152 - 180
Target Start/End: Complemental strand, 23686021 - 23685993
Alignment:
| Q |
152 |
ttttctgaagtagtaatagttagatttcc |
180 |
Q |
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| T |
23686021 |
ttttctgaagtagtaatagttagatttcc |
23685993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 152 - 180
Target Start/End: Complemental strand, 24058258 - 24058230
Alignment:
| Q |
152 |
ttttctgaagtagtaatagttagatttcc |
180 |
Q |
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| T |
24058258 |
ttttctgaagtagtaatagttagatttcc |
24058230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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