View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15575_high_20 (Length: 352)
Name: NF15575_high_20
Description: NF15575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15575_high_20 |
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Alignment Details
Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 29 - 334
Target Start/End: Complemental strand, 32542907 - 32542602
Alignment:
| Q |
29 |
gaaattaagaaagtaacatttcatcattttaattgcacaatcaatgcaataaagcccagaaaactatagaaatctcacacattaaattcaatccaatcca |
128 |
Q |
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| T |
32542907 |
gaaattaaaaaagtaacatttcatcattttaattgcacaatcaatgcaataaagcccagaaaactatagaaatctcacacattaaattcaatccaatcca |
32542808 |
T |
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| Q |
129 |
atcttgattcatctgtccatatctcaatcttcgtaatatcattccannnnnnnacttacaattccaactcaacagtcaacaccaca-tnnnnnnngacac |
227 |
Q |
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| T |
32542807 |
atcttgattcatctgtccatatctcaatctttgtaatatcattcca-ttttttacttacaattccaactcaacagtcaacaccacacaaaaaaaagacac |
32542709 |
T |
|
| Q |
228 |
atatgtgtctcctccactaaccaatcaacgttgtacacacaatcatgtctctctctttctcttaccgacctcgttcccgttcccgccggaaccacacacc |
327 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32542708 |
atatgtgtctcctccactaaccaatcaacgttgtacacacaatcatgtctctctctttctcttaccgacctcgttcccgttcccgccggaaccacacacc |
32542609 |
T |
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| Q |
328 |
accgttc |
334 |
Q |
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||||||| |
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| T |
32542608 |
accgttc |
32542602 |
T |
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