View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15575_high_24 (Length: 318)

Name: NF15575_high_24
Description: NF15575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15575_high_24
NF15575_high_24
[»] chr2 (1 HSPs)
chr2 (1-318)||(30677898-30678215)
[»] chr1 (5 HSPs)
chr1 (10-318)||(13179099-13179407)
chr1 (10-318)||(13166954-13167262)
chr1 (53-318)||(13150849-13151114)
chr1 (60-198)||(30930608-30930746)
chr1 (83-203)||(44313791-44313908)
[»] chr7 (1 HSPs)
chr7 (7-270)||(18892327-18892590)
[»] chr6 (2 HSPs)
chr6 (98-288)||(16322491-16322681)
chr6 (98-288)||(16334639-16334829)
[»] chr4 (1 HSPs)
chr4 (7-273)||(34215545-34215811)
[»] chr8 (1 HSPs)
chr8 (98-203)||(33212659-33212764)
[»] chr3 (1 HSPs)
chr3 (134-231)||(49498499-49498596)
[»] chr5 (1 HSPs)
chr5 (284-316)||(28792445-28792477)


Alignment Details
Target: chr2 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 30678215 - 30677898
Alignment:
Q  1 ctcatgagcagataaaatcatgagcacgcccctcatttctcatgcgtagttagaccgcttgatttggaaggatgaaaagcatgggaaatattatgtaaag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30678215 ctcatgagcagataaaatcatgagcacgcccctcatttctcatgcgtagttagaccgcttgatttggaaggatgaaaagcatgggaaatattatgtaaag 30678116  T
Q  101 agtgcttatcgtttttgtgtcgaggaactcttcgattcttctcatcttcgccgtcccggtaattggtccggaatttggaagcttaaagtacctcctaagg 200  Q
    |||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30678115 agtgcttatcgtttttgtgtcgaggaactcttcgattcttcttaccttcaccgtcccggtaattggtccggaatttggaagcttaaagtacctcctaagg 30678016  T
Q  201 ttcaaaacttagtctggaggatgtgtaggggttgtttacctactagaatccgacttcatgacaaaggtgtgcagtgccctttgcattgcgttagctgtgt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30678015 ttcaaaacttagtctggaggatgtgtaggggttgtttacctacgagaatccgacttcatgacaaaggtgtgcagtgccctttgcattgcgttagctgtgt 30677916  T
Q  301 ttccactcatgaggatct 318  Q
    ||||||||||||||||||    
T  30677915 ttccactcatgaggatct 30677898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 145; Significance: 3e-76; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 10 - 318
Target Start/End: Complemental strand, 13179407 - 13179099
Alignment:
Q  10 agataaaatcatgagcacgcccctcatttctcatgcgtagttagaccgcttgatttggaaggatgaaaagcatgggaaatattatgtaaagagtgcttat 109  Q
    |||| |||||| |||||| ||||| ||| |||||| | ||| |||||| || ||||||||||  ||||||||||||||||||| |   ||||||||||||    
T  13179407 agattaaatcacgagcacaccccttattactcatgtgcagtcagaccgttttatttggaaggcagaaaagcatgggaaatattctacgaagagtgcttat 13179308  T
Q  110 cgtttttgtgtcgaggaactcttcgattcttctcatcttcgccgtcccggtaattggtccggaatttggaagcttaaagtacctcctaaggttcaaaact 209  Q
    ||||| ||||||||||||||  | ||||||||||| |||||||| ||||  ||||||||||| |||| |||||| ||| |||||||||||||||||||||    
T  13179307 cgtttgtgtgtcgaggaacttatagattcttctcaccttcgccgccccgaaaattggtccggcatttagaagctaaaattacctcctaaggttcaaaact 13179208  T
Q  210 tagtctggaggatgtgtaggggttgtttacctactagaatccgacttcatgacaaaggtgtgcagtgccctttgcattgcgttagctgtgtttccactca 309  Q
    |||  ||||||||||  ||||||||||||||||| || || ||||||||||||||||||||  ||||||||  | |||||||||| ||||||||||||||    
T  13179207 tagaatggaggatgttcaggggttgtttacctacgaggattcgacttcatgacaaaggtgtatagtgccctacgaattgcgttagttgtgtttccactca 13179108  T
Q  310 tgaggatct 318  Q
    |||||||||    
T  13179107 tgaggatct 13179099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 10 - 318
Target Start/End: Complemental strand, 13167262 - 13166954
Alignment:
Q  10 agataaaatcatgagcacgcccctcatttctcatgcgtagttagaccgcttgatttggaaggatgaaaagcatgggaaatattatgtaaagagtgcttat 109  Q
    |||| ||||||||||||| ||||| ||| |||||| | |||  ||||  |||||||||||||  ||||||||||||||||||| |   |||| |||||||    
T  13167262 agattaaatcatgagcacaccccttattactcatgtgcagtcggaccatttgatttggaaggcagaaaagcatgggaaatattctccgaagattgcttat 13167163  T
Q  110 cgtttttgtgtcgaggaactcttcgattcttctcatcttcgccgtcccggtaattggtccggaatttggaagcttaaagtacctcctaaggttcaaaact 209  Q
    ||||| ||||||||||||||  | ||||||||||| |||||||| || || |||||| |||| |||| |||| | ||| |||||||||||||||||||||    
T  13167162 cgtttgtgtgtcgaggaacttatagattcttctcaccttcgccgcccaggaaattggcccggcatttagaagttaaaattacctcctaaggttcaaaact 13167063  T
Q  210 tagtctggaggatgtgtaggggttgtttacctactagaatccgacttcatgacaaaggtgtgcagtgccctttgcattgcgttagctgtgtttccactca 309  Q
    |||  | ||||||||| | ||||||||||||||| || || ||||||||| |||||||||| |||||||||    |||||||||| ||||||||||||||    
T  13167062 tagaatcgaggatgtgcaagggttgtttacctacgaggattcgacttcataacaaaggtgtacagtgccctacaaattgcgttagttgtgtttccactca 13166963  T
Q  310 tgaggatct 318  Q
    |||||||||    
T  13166962 tgaggatct 13166954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 53 - 318
Target Start/End: Complemental strand, 13151114 - 13150849
Alignment:
Q  53 gaccgcttgatttggaaggatgaaaagcatgggaaatattatgtaaagagtgcttatcgtttttgtgtcgaggaactcttcgattcttctcatcttcgcc 152  Q
    ||||| |||||||||||||  ||||||||||||||||||| |   |||| |||||||||||| ||||||||||||||  | ||||||||||| |||||||    
T  13151114 gaccgtttgatttggaaggcagaaaagcatgggaaatattctccgaagattgcttatcgtttgtgtgtcgaggaacttatagattcttctcaccttcgcc 13151015  T
Q  153 gtcccggtaattggtccggaatttggaagcttaaagtacctcctaaggttcaaaacttagtctggaggatgtgtaggggttgtttacctactagaatccg 252  Q
    | || || ||||||| ||| |||| |||||| ||| ||||||||||||||||||||||||  | ||||||||| ||||||||||||||||| || || ||    
T  13151014 gcccgggaaattggtacggcatttagaagctaaaattacctcctaaggttcaaaacttagaatcgaggatgtgcaggggttgtttacctacgaggattcg 13150915  T
Q  253 acttcatgacaaaggtgtgcagtgccctttgcattgcgttagctgtgtttccactcatgaggatct 318  Q
    |||||| ||||||||||| || ||||||    |||||||||| |||||||||||||||||||||||    
T  13150914 acttcacgacaaaggtgtacaatgccctacaaattgcgttagttgtgtttccactcatgaggatct 13150849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 60 - 198
Target Start/End: Complemental strand, 30930746 - 30930608
Alignment:
Q  60 tgatttggaaggatgaaaagcatgggaaatattatgtaaagagtgcttatcgtttttgtgtcgaggaactcttcgattcttctcatcttcgccgtcccgg 159  Q
    |||||||||| | |||||  || || ||||||||||| || |||||||| ||||| ||| |||| |||||  | ||||| ||||||||||| ||||| ||    
T  30930746 tgatttggaaagctgaaatacacggcaaatattatgtgaaaagtgcttaccgtttgtgtatcgaagaactaattgattcctctcatcttcgtcgtccagg 30930647  T
Q  160 taattggtccggaatttggaagcttaaagtacctcctaa 198  Q
    |||||||||  | || |||||||||||||||||||||||    
T  30930646 taattggtcgtgtatatggaagcttaaagtacctcctaa 30930608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 83 - 203
Target Start/End: Complemental strand, 44313908 - 44313791
Alignment:
Q  83 gggaaatattatgtaaagagtgcttatcgtttttgtgtcgaggaactcttcgattcttctcatcttcgccgtcccggtaattggtccggaatttggaagc 182  Q
    ||||||||||  || ||||||||||| ||  | ||||||||||||||| | ||| ||||||||||||| |||||||||||||||||   ||  ||||| |    
T  44313908 gggaaatattcagtgaagagtgcttaccgcctgtgtgtcgaggaactcattgatgcttctcatcttcgtcgtcccggtaattggtc---aagctggaaac 44313812  T
Q  183 ttaaagtacctcctaaggttc 203  Q
    |||||||||||||||||||||    
T  44313811 ttaaagtacctcctaaggttc 44313791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 84; Significance: 7e-40; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 7 - 270
Target Start/End: Complemental strand, 18892590 - 18892327
Alignment:
Q  7 agcagataaaatcatgagcacgcccctcatttctcatgcgtagttagaccgcttgatttggaaggatgaaaagcatgggaaatattatgtaaagagtgct 106  Q
    |||||||||||||||||| ||| ||||  || ||||||   ||| |||||| || |||||||||| | ||||| |||| ||||||||||| ||||| ||     
T  18892590 agcagataaaatcatgagtacgtcccttgttgctcatgtacagtcagaccgtttaatttggaaggctaaaaagaatggaaaatattatgtgaagagcgcc 18892491  T
Q  107 tatcgtttttgtgtcgaggaactcttcgattcttctcatcttcgccgtcccggtaattggtccggaatttggaagcttaaagtacctcctaaggttcaaa 206  Q
    |||||||| ||||||||||||||  |||| |||||||| |||||||||||| | ||||||||  | ||||| || ||||||  || ||| ||| ||||||    
T  18892490 tatcgtttatgtgtcgaggaacttatcgaatcttctcaccttcgccgtcccagcaattggtcaagtatttgaaaacttaaaacacttcccaagcttcaaa 18892391  T
Q  207 acttagtctggaggatgtgtaggggttgtttacctactagaatccgacttcatgacaaaggtgt 270  Q
    ||||| | |||||||||||||||||||| ||||| || || || || ||||| || ||||||||    
T  18892390 acttaatatggaggatgtgtaggggttgcttaccgacgaggatgcggcttcaagataaaggtgt 18892327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 98 - 288
Target Start/End: Original strand, 16322491 - 16322681
Alignment:
Q  98 aagagtgcttatcgtttttgtgtcgaggaactcttcgattcttctcatcttcgccgtcccggtaattggtccggaatttggaagcttaaagtacctccta 197  Q
    ||||| || |||||||| ||||||||||| ||  | || ||||||||||||| |||||| |||||||||||  | ||||||||||||||||| ||||| |    
T  16322491 aagagcgcctatcgtttatgtgtcgaggagcttattgactcttctcatcttctccgtcctggtaattggtcaagtatttggaagcttaaagttcctccaa 16322590  T
Q  198 aggttcaaaacttagtctggaggatgtgtaggggttgtttacctactagaatccgacttcatgacaaaggtgtgcagtgccctttgcattg 288  Q
    || ||| ||||||| | |||||||||||| |||||||||||||||| |||||  | ||||| || ||||||||||| || ||| |||||||    
T  16322591 agattcgaaacttaatttggaggatgtgtcggggttgtttacctacgagaatgaggcttcaagataaaggtgtgcaatgtcctatgcattg 16322681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 98 - 288
Target Start/End: Original strand, 16334639 - 16334829
Alignment:
Q  98 aagagtgcttatcgtttttgtgtcgaggaactcttcgattcttctcatcttcgccgtcccggtaattggtccggaatttggaagcttaaagtacctccta 197  Q
    ||||| || |||||||| ||||||||||| ||  | || ||||||||||||| |||||| |||||||||||  | ||||||||||||||||| ||||| |    
T  16334639 aagagcgcctatcgtttatgtgtcgaggagcttattgactcttctcatcttctccgtcctggtaattggtcaagtatttggaagcttaaagttcctccaa 16334738  T
Q  198 aggttcaaaacttagtctggaggatgtgtaggggttgtttacctactagaatccgacttcatgacaaaggtgtgcagtgccctttgcattg 288  Q
    || ||| ||||||| | |||||||||||| |||||||||||||||| |||||  | ||||| || ||||||||||| || ||| |||||||    
T  16334739 agattcgaaacttaatttggaggatgtgtcggggttgtttacctacgagaatgaggcttcaagataaaggtgtgcaatgtcctatgcattg 16334829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 7 - 273
Target Start/End: Complemental strand, 34215811 - 34215545
Alignment:
Q  7 agcagataaaatcatgagcacgcccctcatttctcatgcgtagttagaccgcttgatttggaaggatgaaaagcatgggaaatattatgtaaagagtgct 106  Q
    ||||||||||||||||||||| || ||  || ||||||   |  |||| || || |||||||||| ||||||  |||| | |||||  || |||||  ||    
T  34215811 agcagataaaatcatgagcactccactagttgctcatgtacaagtagatcgtttaatttggaaggctgaaaaaaatggaagatattccgtgaagagcact 34215712  T
Q  107 tatcgtttttgtgtcgaggaactcttcgattcttctcatcttcgccgtcccggtaattggtccggaatttggaagcttaaagtacctcctaaggttcaaa 206  Q
    |||| ||| ||||||||||| ||  |  | |||||||||||||||||||| |||||||||||  | ||||||||||||||||| ||||| ||| ||| ||    
T  34215711 tatcatttatgtgtcgaggagcttattaactcttctcatcttcgccgtcctggtaattggtcgagtatttggaagcttaaagttcctccaaagattcgaa 34215612  T
Q  207 acttagtctggaggatgtgtaggggttgtttacctactagaatccgacttcatgacaaaggtgtgca 273  Q
    ||||| | |||||||||||| |||||||||||||||| |||||  | ||||  || |||||||||||    
T  34215611 acttaatttggaggatgtgtcggggttgtttacctacgagaatgaggcttcgagataaaggtgtgca 34215545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 9e-27; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 98 - 203
Target Start/End: Original strand, 33212659 - 33212764
Alignment:
Q  98 aagagtgcttatcgtttttgtgtcgaggaactcttcgattcttctcatcttcgccgtcccggtaattggtccggaatttggaagcttaaagtacctccta 197  Q
    ||||||||||| || || ||||||||||||||| | ||| ||||||||||||| |||||||||||||||||  | |||||||| ||||||||||||||||    
T  33212659 aagagtgcttaccgcttgtgtgtcgaggaactcattgatgcttctcatcttcgtcgtcccggtaattggtcaagcatttggaaacttaaagtacctccta 33212758  T
Q  198 aggttc 203  Q
    ||||||    
T  33212759 aggttc 33212764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 134 - 231
Target Start/End: Original strand, 49498499 - 49498596
Alignment:
Q  134 gattcttctcatcttcgccgtcccggtaattggtccggaatttggaagcttaaagtacctcctaaggttcaaaacttagtctggaggatgtgtagggg 231  Q
    |||||||||||||| || ||||| |||  |||||| |||||||||||||||||||| |||||||| ||| |||| ||||| ||| | |||||| ||||    
T  49498499 gattcttctcatctccgtcgtccaggttcttggtcaggaatttggaagcttaaagttcctcctaaagttaaaaatttagtgtggcgtatgtgtcgggg 49498596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 284 - 316
Target Start/End: Original strand, 28792445 - 28792477
Alignment:
Q  284 cattgcgttagctgtgtttccactcatgaggat 316  Q
    ||||||||||||||||| |||||||||||||||    
T  28792445 cattgcgttagctgtgtctccactcatgaggat 28792477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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