View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15575_high_27 (Length: 299)
Name: NF15575_high_27
Description: NF15575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15575_high_27 |
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Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 16 - 283
Target Start/End: Original strand, 6152889 - 6153157
Alignment:
| Q |
16 |
ctacattaaatataagtgatgggtatttgagctatgttcaacccaaattctgagattagttgtttaggttatagattggatactacttt-gtgatgatgt |
114 |
Q |
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| T |
6152889 |
ctacattaaatataagtggtgggtatttgagttatgttcaacccaaattctgagattagttgtttaggttatagattggatactacttttgtgattatgt |
6152988 |
T |
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| Q |
115 |
tgctaaatcgcaaacatgtggagatttaatactattccgtttattatgttaatacatttaccaactcannnnnnnacacctttatcaattcattttaagc |
214 |
Q |
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| T |
6152989 |
tactaaatcgcaaacatgtcgaaatttaatactattacgtttattatgttaatacatttaccaactcatttttttacacctttatcaattcattttaagc |
6153088 |
T |
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| Q |
215 |
actatttatatgaagggttgtagagctcctgctaaatcatgtgcttgaaagtctgattaaactcaaaac |
283 |
Q |
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| T |
6153089 |
actatttatatgaagggttgtagagctcctgctaaatcatgtgcttgaaagtctgattaaactcaaaac |
6153157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 26 - 110
Target Start/End: Original strand, 6146739 - 6146823
Alignment:
| Q |
26 |
tataagtgatgggtatttgagctatgttcaacccaaattctgagattagttgtttaggttatagattggatactactttgtgatg |
110 |
Q |
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| T |
6146739 |
tataagtggtgggtatttaagttatgttcaacccaaattctgatattagttatttagattatagattggatactattttatgatg |
6146823 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 48 - 110
Target Start/End: Original strand, 6127439 - 6127501
Alignment:
| Q |
48 |
tatgttcaacccaaattctgagattagttgtttaggttatagattggatactactttgtgatg |
110 |
Q |
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| T |
6127439 |
tatgttcaacctaaattctgagattagttatttaggttatagattggatactattttatgatg |
6127501 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 39 - 109
Target Start/End: Complemental strand, 33801854 - 33801784
Alignment:
| Q |
39 |
tatttgagctatgttcaacccaaattctgagattagttgtttaggttatagattggatactactttgtgat |
109 |
Q |
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| T |
33801854 |
tatttgagttatgtttaacccaaatttttagattagttatttaggtaaaagattgaatactactttgtgat |
33801784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 109
Target Start/End: Complemental strand, 33730576 - 33730506
Alignment:
| Q |
39 |
tatttgagctatgttcaacccaaattctgagattagttgtttaggttatagattggatactactttgtgat |
109 |
Q |
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| T |
33730576 |
tatttgagttatgtttaacccaaatttttagattaattatttaggtaaaagattgaatactactttgtgat |
33730506 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 106
Target Start/End: Complemental strand, 7917124 - 7917067
Alignment:
| Q |
48 |
tatgttcaacccaaattctgagattagttgtttaggttatagattggatactactttgt |
106 |
Q |
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| T |
7917124 |
tatgtccaactcaaattttaagattagttatttaggttatagattggata-tactttgt |
7917067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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