View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15575_high_31 (Length: 247)
Name: NF15575_high_31
Description: NF15575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15575_high_31 |
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| [»] scaffold0031 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 164; Significance: 9e-88; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 10 - 238
Target Start/End: Original strand, 3682555 - 3682778
Alignment:
| Q |
10 |
ttttaataagaacattagaagtagacaccatattttggaaaaatacggtaattcctttcattccataaaatccaaactgtagcaaaccaaattgtcgtaa |
109 |
Q |
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||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||| ||| |||||||||||||| ||||||||||||||||| ||| |
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| T |
3682555 |
ttttaataagaacatcagaagtagacaccatattttggaaaa-tacggtaattcatttccttctataaaatccaaactatagcaaaccaaattgtcctaa |
3682653 |
T |
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| Q |
110 |
agaataaataaataggaagatcttggccatcccgccatcttagtaaattgcatgaattgatggcgcaaatgaaatggcataacgaacgaaatacctaacc |
209 |
Q |
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|||||| |||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
3682654 |
agaata----aataggaagatcttggccatcctgtcatcttagtaaattgcatgaattgatggcgcaaatgaaattgcataacgaacgaaatacctaacc |
3682749 |
T |
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| Q |
210 |
agttaaggacattataccaaagctctctg |
238 |
Q |
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| T |
3682750 |
aattaaggacattataccaaagctctctg |
3682778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0031 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: scaffold0031
Description:
Target: scaffold0031; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 51294 - 51525
Alignment:
| Q |
1 |
acttaacctttttaataagaacattagaagtagacaccatattttggaaaaatacggtaattcctttcattccataaaatccaaactgtagcaaaccaaa |
100 |
Q |
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|||||||||||| ||||||| || |||||||| |||||||||||||| | |||||||||||||||| |||||||||||||||||||| |||||||||| |
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| T |
51294 |
acttaaccttttcaataagatcaacggaagtagagaccatattttggaata-tacggtaattcctttccttccataaaatccaaactgttgcaaaccaaa |
51392 |
T |
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| Q |
101 |
ttgtcgtaaagaataaataaataggaagatcttggccatcccgccatcttagtaaattgcatgaattgatggcgcaaatgaaatggcataacgaacgaaa |
200 |
Q |
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| T |
51393 |
ttttcgtgaa----aaataaataggaagatctgaaccaacccgccatcttagtaaattgcatgaagtgatgtcgcaaaaatgatggcataacgaaagaga |
51488 |
T |
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| Q |
201 |
tacctaaccagttaaggacattataccaaagctctct |
237 |
Q |
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| T |
51489 |
tacctagccaattaaaaacattattccaaagctctct |
51525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 93; Significance: 2e-45; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 52 - 237
Target Start/End: Original strand, 643843 - 644024
Alignment:
| Q |
52 |
atacggtaattcctttcattccataaaatccaaactgtagcaaaccaaattgtcgtaaagaataaataaataggaagatcttggccatcccgccatctta |
151 |
Q |
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| T |
643843 |
atacggtgattcctttccttccatagaacccaaactgtagcaaaccaaattgtcgtaaagaataaatgagtag----atcttggccatcccgccatttta |
643938 |
T |
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| Q |
152 |
gtaaattgcatgaattgatggcgcaaatgaaatggcataacgaacgaaatacctaaccagttaaggacattataccaaagctctct |
237 |
Q |
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| T |
643939 |
gtaaattgcataaagtgatgtcgcaactgaaaaggcattaccaaaaaaattcctagccagttaagaacattataccaaagctctct |
644024 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 54 - 206
Target Start/End: Complemental strand, 42831146 - 42830998
Alignment:
| Q |
54 |
acggtaattcctttcattccataaaatccaaactgtagcaaaccaaattgtcgtaaagaataaataaataggaagatcttggccatcccgccatcttagt |
153 |
Q |
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| T |
42831146 |
acggtaattcatatccttccataaaacccaaattgtggcaaaccaaatagtcgtaaaaaacaaatga----gaagatcttgaccatcccgccatcttagt |
42831051 |
T |
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| Q |
154 |
aaattgcatgaattgatggcgcaaatgaaatggcataacgaacgaaataccta |
206 |
Q |
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| T |
42831050 |
aaattgcaagaaatgatgtcgcaactgtaatggcatcaccaaagagataccta |
42830998 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 118
Target Start/End: Original strand, 31874442 - 31874508
Alignment:
| Q |
52 |
atacggtaattcctttcattccataaaatccaaactgtagcaaaccaaattgtcgtaaagaataaat |
118 |
Q |
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| T |
31874442 |
atacagtagttcctttccttccagattacccaaactgttgcaaaccaaattgtcctaaagaataaat |
31874508 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 9 - 237
Target Start/End: Original strand, 2089228 - 2089450
Alignment:
| Q |
9 |
tttttaataagaacattagaagtagacaccatattttggaaaaatacggtaattcctttcattccataaaatccaaactgtagcaaaccaaattgtcgta |
108 |
Q |
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|||| ||||||| || ||||||||| || |||||||||| | |||| |||||||||| ||||||| || || ||||||||||||||||||| |||| |
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| T |
2089228 |
ttttcaataagagcaacagaagtagaggccgtattttggaata-tacgataattccttttcttccatagaacccgtactgtagcaaaccaaattgccgta |
2089326 |
T |
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| Q |
109 |
aagaataaataaataggaagatcttggccatcccgccatcttagtaaattgcatgaattgatggcgcaaatgaaatggcataacgaacgaaatacctaac |
208 |
Q |
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|||||||||| | |||||||||| ||||||||||||||||||||||| ||| |||||||| ||||||||||||||||| || || |||||||||||| |
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| T |
2089327 |
aagaataaatga----gaagatcttg-ccatcccgccatcttagtaaattacataaattgatgtcgcaaatgaaatggcattaccaaagaaatacctaac |
2089421 |
T |
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| Q |
209 |
cagttaaggacattataccaaagctctct |
237 |
Q |
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|| || | |||||||||||||||||||| |
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| T |
2089422 |
caattgaaaacattataccaaagctctct |
2089450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 127 - 237
Target Start/End: Complemental strand, 4534991 - 4534881
Alignment:
| Q |
127 |
agatcttggccatcccgccatcttagtaaattgcatgaattgatggcgcaaatgaaatggcataacgaacgaaatacctaaccagttaaggacattatac |
226 |
Q |
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|||||||||||||||| ||| || ||||| ||||| || ||||| ||||| ||||| ||||| || || ||||| |||| ||||||||| ||||||||| |
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| T |
4534991 |
agatcttggccatcccaccaattttgtaaaatgcataaagtgatgtcgcaagtgaaaaggcattaccaaagaaattcctagccagttaagaacattatac |
4534892 |
T |
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| Q |
227 |
caaagctctct |
237 |
Q |
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||||||||||| |
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| T |
4534891 |
caaagctctct |
4534881 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 52 - 110
Target Start/End: Complemental strand, 4535089 - 4535031
Alignment:
| Q |
52 |
atacggtaattcctttcattccataaaatccaaactgtagcaaaccaaattgtcgtaaa |
110 |
Q |
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||||||| ||||||||| ||||||| || |||||||||||||||||||||||||||||| |
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| T |
4535089 |
atacggtgattcctttccttccatagaacccaaactgtagcaaaccaaattgtcgtaaa |
4535031 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 118
Target Start/End: Complemental strand, 1947561 - 1947495
Alignment:
| Q |
52 |
atacggtaattcctttcattccataaaatccaaactgtagcaaaccaaattgtcgtaaagaataaat |
118 |
Q |
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|||| ||||||| |||| ||||| | ||||||||||||||||||||||||||| | || ||||||| |
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| T |
1947561 |
atacagtaattcttttccttccaaattatccaaactgtagcaaaccaaattgtccttaaaaataaat |
1947495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 52 - 118
Target Start/End: Original strand, 25056878 - 25056944
Alignment:
| Q |
52 |
atacggtaattcctttcattccataaaatccaaactgtagcaaaccaaattgtcgtaaagaataaat |
118 |
Q |
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| T |
25056878 |
atacggtaattcctttccttccatattacccagactgtagcaaaccaaattgtcctaaacaataaat |
25056944 |
T |
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