View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15575_high_5 (Length: 476)
Name: NF15575_high_5
Description: NF15575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15575_high_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 18 - 466
Target Start/End: Original strand, 8040182 - 8040614
Alignment:
| Q |
18 |
gaatcaagttaatcttgcaaggaaaaatactttagttatatgacacaagttagtttatatgagtaccattttggtattgtgagtgattcaaaaggagtgg |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8040182 |
gaatcaagttaatcttgcaaggaaaaatactatagttatatgacacaagttagtttatatgagtaccattttggtattgtgagtgattcaaaaggagtgg |
8040281 |
T |
|
| Q |
118 |
tttgtacctaaaatggataagagcctaagacataagacataatgaacatgatttcttctaaaatggttcaagagtcaagagataaccaaattcatgaagc |
217 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8040282 |
----------------ataagagcctaagacctaagacataatgaacatgatttcttctaaaatggttcaagagtcaagagataaccaaattcatgaagc |
8040365 |
T |
|
| Q |
218 |
tataatgcatgttacgagtgcagaaatgcaagtgcacaattgtcaaagcataaaacatgaattgaagttctaatgtacattacttatcgacgtcgtctac |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
8040366 |
tataatgcatgttacgagtgcagaaatgcaagtgcacaattgtcaaagcataaaacatgaatcgaagttctaatgtacattacttatcgaagtcgtctac |
8040465 |
T |
|
| Q |
318 |
catgtaaaataaactcatacgaaaatgttacaaacctgaataacataatttccatattgatcatgtgctaaagtgcagacagattgcatgatttcttcta |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8040466 |
catgtaaaataaactcatacgaaaatgttacaaacctgaataacataatttccatattgatcatgtgctaaagtgcagacagattgcatgatttcttcta |
8040565 |
T |
|
| Q |
418 |
tgacaatttcttgagtttttagatcatcgaagtgttctagaaccctatg |
466 |
Q |
| |
|
||| |||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
8040566 |
tgataatttcttaagtttttagatcatcgaagtgttctagaaccctatg |
8040614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 124 - 463
Target Start/End: Complemental strand, 42529077 - 42528735
Alignment:
| Q |
124 |
cctaaaatggataagagcctaagacataagacataatgaacat---gatttcttctaaaatggttcaagagtcaagagataaccaaattcatgaagctat |
220 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||| |||||||| |||||||||||||||| ||||||| |||||||||||||||| ||||||| |||| |
|
|
| T |
42529077 |
cctaaaatggataagagcccaagacctaagacagaatgaacagcaagatttcttctaaaatgattcaagattcaagagataaccaaagtcatgaaactat |
42528978 |
T |
|
| Q |
221 |
aatgcatgttacgagtgcagaaatgcaagtgcacaattgtcaaagcataaaacatgaattgaagttctaatgtacattacttatcgacgtcgtctaccat |
320 |
Q |
| |
|
| |||||||||||||||||||||| ||||||||||||||||||||||||||| |||| || |||| |||| |||||||||||||| |||||||||||||| |
|
|
| T |
42528977 |
actgcatgttacgagtgcagaaatacaagtgcacaattgtcaaagcataaaagatgatttaaagtgctaaagtacattacttatcaacgtcgtctaccat |
42528878 |
T |
|
| Q |
321 |
gtaaaataaactcatacgaaaatgttacaaacctgaataacataatttccatattgatcatgtgctaaagtgcagacagattgcatgatttcttctatga |
420 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
42528877 |
gtaaaataaactcatacgaaaatgttacaaacctgaataacataatttccatattgatcctgtgctaaagtgcagacagattgcatgatttcttccatga |
42528778 |
T |
|
| Q |
421 |
caatttcttgagtttttagatcatcgaagtgttctagaaccct |
463 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
42528777 |
taatttcttgagtttttagatcatcgcagtgttctagaaccct |
42528735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University