View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15575_high_9 (Length: 443)
Name: NF15575_high_9
Description: NF15575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15575_high_9 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 184; Significance: 2e-99; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 245 - 428
Target Start/End: Original strand, 30172908 - 30173091
Alignment:
| Q |
245 |
gaccaggacaagattattgactttaagaaaataaaattcgcactttattttggaatgtaccatatatgtttaatcaagttaaggaagttaatcattcatt |
344 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30172908 |
gaccaggacaagattattgactttaagaaaataaaattcgcactttattttggaatgtaccatatatgtttaatcaagttaaggaagttaatcattcatt |
30173007 |
T |
|
| Q |
345 |
cccatattatgtttccagaagagaacatgccacagccagtggatggaatatgcggacatccaaaaccgatctcaagcatataca |
428 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30173008 |
cccatattatgtttccagaagagaacatgccacagccagtggatggaatatgcggacatccaaaaccgatctcaagcatataca |
30173091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 13 - 152
Target Start/End: Original strand, 30172680 - 30172815
Alignment:
| Q |
13 |
aatatggagtaatttt-aaaaaattcatatctaaaaattgttaactaaaattcnnnnnnnnnnnnccttcaaactttgcttactttccgccaaatttcag |
111 |
Q |
| |
|
||||||||||||||| ||||||||||| |||||||||||||||||||||||| | ||||||| ||||||||||||||||||||||| |
|
|
| T |
30172680 |
aatatggagtaatttacaaaaaattcatctctaaaaattgttaactaaaattcatttttttt-----tccaaacttcgcttactttccgccaaatttcag |
30172774 |
T |
|
| Q |
112 |
attatcggagtccttttctcttaagaacagagagttaacac |
152 |
Q |
| |
|
||||| |||||||||||||||||||||| |||||||||||| |
|
|
| T |
30172775 |
attattggagtccttttctcttaagaaccgagagttaacac |
30172815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University