View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15575_low_10 (Length: 438)
Name: NF15575_low_10
Description: NF15575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15575_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 200 - 419
Target Start/End: Original strand, 11708525 - 11708746
Alignment:
| Q |
200 |
aatcaaaatatcatccttaaattt--atttaaaagattgacatttttcgacatatatttttccaatttttgctctcactgttttactatattttaaataa |
297 |
Q |
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| T |
11708525 |
aatcaaaatatcatccttaaatttttatttaagagattgacatttttcgacatatatttttccaatttttgctctcactgttttactatattttaaataa |
11708624 |
T |
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| Q |
298 |
aacttagtataaagaatactatagtgtataatcatggaaagatttcttaggaccacattcactctgaggaatacatacaatattacatgttaatatatac |
397 |
Q |
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| T |
11708625 |
aactttgtataaagaatactatagtgtataatcatggaaagatttcttaggaccatattcactatgaggaatacatacaatattacatattaatatatac |
11708724 |
T |
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| Q |
398 |
acgaaaagggtagacaatccct |
419 |
Q |
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|||||||||||| ||||||||| |
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| T |
11708725 |
acgaaaagggtaaacaatccct |
11708746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 3 - 144
Target Start/End: Original strand, 11708326 - 11708467
Alignment:
| Q |
3 |
gagagagatgaagggtaaagaaattggaaagggaagtgatgttggaaaagaaagtgaaaatgaagaggttctaaagaagattattgctagccatcctttg |
102 |
Q |
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|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
11708326 |
gagagagatggagagtaaagaaattggaaagggaagtgatgttggaaaagaaagtgaaaatgaagaggttctaaagaagattattgcaagccatcctttg |
11708425 |
T |
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| Q |
103 |
tttgaagtattgattgagtctcacatcaattgtttgaaggta |
144 |
Q |
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| T |
11708426 |
tttgaagtattgattgagtctcacatcaattgtttgaaggta |
11708467 |
T |
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