View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15575_low_11 (Length: 429)
Name: NF15575_low_11
Description: NF15575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15575_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 13 - 364
Target Start/End: Complemental strand, 48672104 - 48671751
Alignment:
| Q |
13 |
aatattcatgtacatataattgcaaccttggaagtgttattgtaaaagacaatcaacgcgtggtagaaaaatacgtctagtatctttgattaaaatggtn |
112 |
Q |
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| T |
48672104 |
aatattcatgtacatatagttgcaaccttggtagtgttattataaaagacaatcaacgcgtggtagaaaaatacgtctagtatctttgattaaaatggta |
48672005 |
T |
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| Q |
113 |
nnnnnntattacgaatacactatgaatttcaaaatgttaccacaaaacaaccaaacatgtctggcgctgtttgataaatatgataaaacgtttgaaatgt |
212 |
Q |
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| T |
48672004 |
aaaaa-tattacgaatacactatgaatttcaaaatgttaccacaaaacaaccaaacatgtctggcgctgtttgataaatatggtaaaacgtttgaaatgt |
48671906 |
T |
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| Q |
213 |
aatccatcaaacatagtaacattatcacgaaaatgggtaagacatttaaatgtaatcgcgagtttaatgatgtgccaaaaataaaacaccttgaaatgta |
312 |
Q |
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| T |
48671905 |
aatccatcaaacatagtaacgttatcacgaaaatgggtaagacatttaaatgtaatcgcgag-ttaaagatgtgccaaaaataaaacaccttgaaatgta |
48671807 |
T |
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| Q |
313 |
taaacttagatatttggttagttttatatata----tttagtaaatggttaattct |
364 |
Q |
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| T |
48671806 |
taaacttaaatatttggttagtcttatatatatatttttagtaaatggttaattct |
48671751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 364 - 429
Target Start/End: Complemental strand, 48671724 - 48671659
Alignment:
| Q |
364 |
tttctttaagaactataaataaaaaaggaaatgagcattgagcaagtaattcattagtgtccaaaa |
429 |
Q |
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| T |
48671724 |
tttctttaaaaactataaataaaaaaggaaatgagcattgagcaagtaattcattagtgtccaaaa |
48671659 |
T |
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