View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15575_low_12 (Length: 427)
Name: NF15575_low_12
Description: NF15575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15575_low_12 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 16 - 427
Target Start/End: Original strand, 5743966 - 5744377
Alignment:
| Q |
16 |
tatctttcataccaactcatatctagcaacagcacgcaactagcttgccttccctgcaccatattctatatacacaacagaaatgtgtacattattctcg |
115 |
Q |
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| T |
5743966 |
tatctttcataccaactcatatctagcaacaacacgcaactagtttgctttccctgcaccatattctatatacacaacagaaatgtgtacattattctcg |
5744065 |
T |
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| Q |
116 |
cctcaatatgcgaatgcacgagaattttactattttgtgctnnnnnnnncatgcaacacttacgcatacatatgtgtatgcatgaacctcacatgataca |
215 |
Q |
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| T |
5744066 |
cctcaatatgcgaatgcacgagaattttactattttgtgctaaaaaaaacatgcaacacttacgcatacatatgtgtatgcatgaacctcacatgataca |
5744165 |
T |
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| Q |
216 |
aactaaatttcatgtgccttatgttaccatcctttgaagatctcttctataagtagagcaagagagaaatagtttatatattgatacatactctcatctt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5744166 |
aactaaatttcatgtgccttatgttaccatcctttgaagatctcttctataagtagagcaagagagaaatagtttatatattgatacatactctcatctt |
5744265 |
T |
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| Q |
316 |
tccaatttttccttctagtgttttattatctattgaaaatgacaatgaaacaaatgatttttgttatgtttttctcattcttttcccttaacctcgtctc |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
5744266 |
tccaatttttccttctagtgttttattatctattgaaaatgacaatgaaacaaatgatttttgttatgtttttctcattcttttcccttaacctcctctc |
5744365 |
T |
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| Q |
416 |
cccaatctttac |
427 |
Q |
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| T |
5744366 |
cccaatctttac |
5744377 |
T |
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