View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15575_low_13 (Length: 424)
Name: NF15575_low_13
Description: NF15575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15575_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 42 - 400
Target Start/End: Original strand, 38899120 - 38899478
Alignment:
| Q |
42 |
agtagtaatctagaaacatggttgccaaggacttaaaataaaccacatacttgttctcatgccaacacttccaccaactagatttcactataaatgccgg |
141 |
Q |
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| T |
38899120 |
agtagtaatctagaaacatggttgccaaggacttaaaataaaccacatacttgttctcatgccaacacttccaccaactagatttcactataaatgccgg |
38899219 |
T |
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| Q |
142 |
ttaatagcagcatgtaacaatgaactatttcgagttggtttttaaatcattgtttaacattacatttatcaatcaaatattttctaaagtaaatcaatgg |
241 |
Q |
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| T |
38899220 |
ttaatagcagcatgtaacaatgaactatttcgagttggtttttaaatcattgtttaacattacatttatcaatcaaatattttctaaagtaaaacaatgg |
38899319 |
T |
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| Q |
242 |
aaatttatatccttttctgatttgttgtccgtggctaaaggctctggcatcttgatcaacatatagttgaaattcttacaagatcttgattaataacgtc |
341 |
Q |
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|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
38899320 |
aaatttgtaaccttttctgatttgttgtccgtggctaaaggctctggcatcttgatcaatatatagttgaaattcttacaagatcttgattaataacgtc |
38899419 |
T |
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| Q |
342 |
attagtgctattaacggaaaaacgatctatcggtttttatgttgcatttaattgtatat |
400 |
Q |
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| T |
38899420 |
attagtgctattaacggaaaaacgatctatcggtttttatgttgcatttaattgtatat |
38899478 |
T |
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