View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15575_low_17 (Length: 373)
Name: NF15575_low_17
Description: NF15575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15575_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 15 - 348
Target Start/End: Complemental strand, 44027913 - 44027583
Alignment:
| Q |
15 |
aagttggctacctgtaaattaagttcaatctattaaaatcctaaagtatcttcaagaataagatt-catgcttggcatatttcttttcttcttttccaaa |
113 |
Q |
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| T |
44027913 |
aagttggctacctgtaaattaagttcaatctattaaaatcctaaagtatcttcaagaataagatttcatgcttggcatatttctttttttcttttccaaa |
44027814 |
T |
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| Q |
114 |
tccgtttatatttttgccggatcataacaggatggtgtaaacagtatttttagtccacttgtgagttgtctcatacacatgatttagatagcattgtaat |
213 |
Q |
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| T |
44027813 |
tccgtttatatttttgccggatcataacaggatggtgtaaacggtatttttagtccacttgtgagttgtttcatacacatgatttagatagcattgtaat |
44027714 |
T |
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| Q |
214 |
ctttcttacacatgcataatgtgtaggattttggccttgtttgcttccatttcagttaattaaattgggataaattttcacatcaaatatgtgggttgtt |
313 |
Q |
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| T |
44027713 |
ctttcttacacatgcataatgtgtaggattttggccttgtttgcttccatttc----aattaaattgggataaattttcacatcaaatatgtgggttgtt |
44027618 |
T |
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| Q |
314 |
ttctatatggttgaaccgacataaatttcaaccaa |
348 |
Q |
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| T |
44027617 |
ttctatatggttgaaccgacataaatttcaaccaa |
44027583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 15 - 311
Target Start/End: Original strand, 43293065 - 43293357
Alignment:
| Q |
15 |
aagttggctacctgtaaattaagttcaatctattaaaatcctaaagtatcttcaagaataagattcatgcttggcatatttcttttcttcttttccaaat |
114 |
Q |
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| T |
43293065 |
aagttggctacctgtaaattaagttcaatctattaaaatcctaaagtatcttcaagaataagattcatgcttggcatatttcttttcttcttttccaaat |
43293164 |
T |
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| Q |
115 |
ccgtttatatttttgccggatcataacaggatggtgtaaacagtatttttagtccacttgtgagttgtctcatacacatgatttagatagcattgtaatc |
214 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43293165 |
ccgtttatatttttgccggatcataacatgatggtgtaaacagtatttttagtccacttgtgagttgtctcatacacatgatttagatagcattgtaatc |
43293264 |
T |
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| Q |
215 |
tttcttacacatgcataatgtgtaggattttggccttgtttgcttccatttcagttaattaaattgggataaattttcacatcaaatatgtgggttg |
311 |
Q |
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| T |
43293265 |
tttcttacacatgcataatgtgtaggattttggccttgtttgcttccatttcag----ttaaattgggataaattttcacatcaaatatgtgggttg |
43293357 |
T |
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