View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15575_low_2 (Length: 582)
Name: NF15575_low_2
Description: NF15575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15575_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 500; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 19 - 570
Target Start/End: Original strand, 30854599 - 30855149
Alignment:
| Q |
19 |
acgtgtgagctttgaatctctataaggtatatgaccacttctttttccaatactgcatatcatggaaaagtaaaaaatcagaaggagaatctctagttgc |
118 |
Q |
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| T |
30854599 |
acgtgtgagctttgaatctctataaggtatatgaccgcttctttttccaatactgcatatcatggaaaagtaaaaaatcagaaggtgaatctctaattgc |
30854698 |
T |
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| Q |
119 |
actactaaatcaacttccagaaaacaacaccgacactgacctgagcttcctgataacagttgtaagagtcatcaaactaaggttaatatggcagccttct |
218 |
Q |
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| T |
30854699 |
actacaaaatcaacttccagaaaacaacgccgacactgacctgagcttcctgataacagttgtaagagtcatcaaactaaggttaatatggcagccttct |
30854798 |
T |
|
| Q |
219 |
ttgagcctagtgccatctgcatgtgtctgcgcagccctctcacttccagccagatcaacaaagttctgcattcatttacacaaataattcagtcagcatc |
318 |
Q |
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| T |
30854799 |
ttgagcctggtgccatctgcatgtgtctgcgcagccctctcacttccagccagatcaacaaagttctgcattcatttacacaaataattcagtctgcgtc |
30854898 |
T |
|
| Q |
319 |
tcagcgagaactattatatccattttaaagttgataaggaggaaacttcaattaccagagtagcaacaaaagatttcacacagtctgctgtttcacgaag |
418 |
Q |
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||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30854899 |
tcagcgagaactattatatccattttaaagttgataaaggggaaacttcaattaccagagtagcaacaaaagatttcacacagtctgctgtttcacgaag |
30854998 |
T |
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| Q |
419 |
agtactttgaattgtctgcaatataaacatgccatattagttacaaaagtgaatggaagagaaaaggatcgagttctgcaaattccagcaaggaatatta |
518 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
30854999 |
agtactttgaattgtctgcaatataaacgtgccatattagttacaaaagtgaatggaagagaaaaggat-gagttctgcaaattccagcaaggaatatta |
30855097 |
T |
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| Q |
519 |
ctctcactgaccagtctaattatctggtgagaccttgagctgttatcgttca |
570 |
Q |
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| T |
30855098 |
ctctcactgaccagtctaattatctggtgagaccttgagctgttatcgttca |
30855149 |
T |
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