View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15575_low_21 (Length: 349)

Name: NF15575_low_21
Description: NF15575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15575_low_21
NF15575_low_21
[»] chr7 (14 HSPs)
chr7 (18-346)||(31103462-31103790)
chr7 (163-346)||(31059018-31059201)
chr7 (163-346)||(31140821-31141004)
chr7 (163-346)||(31159653-31159836)
chr7 (163-346)||(31241756-31241939)
chr7 (168-344)||(31184544-31184720)
chr7 (232-343)||(17825265-17825376)
chr7 (292-346)||(14606735-14606789)
chr7 (292-346)||(16025912-16025966)
chr7 (292-346)||(16173388-16173442)
chr7 (298-346)||(15676310-15676358)
chr7 (247-343)||(17849362-17849458)
chr7 (292-346)||(15664469-15664523)
chr7 (240-346)||(16103720-16103826)
[»] scaffold0289 (2 HSPs)
scaffold0289 (240-346)||(13576-13682)
scaffold0289 (292-346)||(4795-4849)
[»] chr1 (8 HSPs)
chr1 (241-346)||(14521800-14521905)
chr1 (241-346)||(15002938-15003043)
chr1 (241-346)||(15011831-15011936)
chr1 (241-346)||(15037850-15037955)
chr1 (238-346)||(14504813-14504921)
chr1 (243-346)||(15041418-15041521)
chr1 (300-346)||(14531980-14532026)
chr1 (241-346)||(15017946-15018051)


Alignment Details
Target: chr7 (Bit Score: 300; Significance: 1e-169; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 18 - 346
Target Start/End: Complemental strand, 31103790 - 31103462
Alignment:
Q  18 aaatggactctggtacatccacataacttatctatttaattnnnnnnntgattcttttcagttggaaatgtattttagcgcatattcttttacacagatt 117  Q
    |||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31103790 aaatggactctggtacatccacataacttatctatttaattaaaaaaatgattcttttcagttggaaatgtattttagcgcatattcttttacacagatt 31103691  T
Q  118 ccactgctactagtgtatagaacgaaacttgtgtaaattaaaaatgaggagaaatggttctaacctggagctgcatacccaaaagtgcctgcaaattgtg 217  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31103690 ccactgctactagtgtatataacgaaacttgtgtaaattaaaaatgaggagaaatggttctaacctggagctgcatacccaaaagtgcctgcaaattgtg 31103591  T
Q  218 tccaactatgtaagtcaggcttaagaaacttagctgtcccaaattcggagacatgagcttcatagtcaagattgagaagaatattcttgctcgatatatc 317  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31103590 tccaactatgtaagtcaggcttaagaaacttagctgtcccaaagtcggagacatgagcttcatagtcaagattgagaagaatattcttgctcgatatatc 31103491  T
Q  318 acgatgaataataggaggtgagcaatcat 346  Q
    |||||||||||||||||||||||||||||    
T  31103490 acgatgaataataggaggtgagcaatcat 31103462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 163 - 346
Target Start/End: Complemental strand, 31059201 - 31059018
Alignment:
Q  163 gaggagaaatggttctaacctggagctgcatacccaaaagtgcctgcaaattgtgtccaactatgtaagtcaggcttaagaaacttagctgtcccaaatt 262  Q
    |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| | ||||||||||||||| || |    
T  31059201 gaggggaaatggatctaacctggagctgcatacccaaaagtgcctgcaaattgtgtccaactatgtaggccaggctttaaaaacttagctgtcccgaagt 31059102  T
Q  263 cggagacatgagcttcatagtcaagattgagaagaatattcttgctcgatatatcacgatgaataataggaggtgagcaatcat 346  Q
    |||| ||||||||||||||||||||||| ||||||| ||||||||| |||||||| |||||||| |||||||| ||||||||||    
T  31059101 cggaaacatgagcttcatagtcaagattaagaagaacattcttgcttgatatatcgcgatgaattataggaggcgagcaatcat 31059018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 163 - 346
Target Start/End: Complemental strand, 31141004 - 31140821
Alignment:
Q  163 gaggagaaatggttctaacctggagctgcatacccaaaagtgcctgcaaattgtgtccaactatgtaagtcaggcttaagaaacttagctgtcccaaatt 262  Q
    |||| ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||  | ||||| ||||||||||| || ||||| |    
T  31141004 gaggggaaatggatctaacctggagctgcatacccaaaagtgcctgcaaattgggtccaactaagtaaacctggctttagaaacttagccgttccaaagt 31140905  T
Q  263 cggagacatgagcttcatagtcaagattgagaagaatattcttgctcgatatatcacgatgaataataggaggtgagcaatcat 346  Q
    ||||||| |||||||||||||||||||| ||||| | ||||||||| |||||||||||||||||||||||||| || |||||||    
T  31140904 cggagacttgagcttcatagtcaagattaagaaggacattcttgcttgatatatcacgatgaataataggaggagaacaatcat 31140821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 163 - 346
Target Start/End: Complemental strand, 31159836 - 31159653
Alignment:
Q  163 gaggagaaatggttctaacctggagctgcatacccaaaagtgcctgcaaattgtgtccaactatgtaagtcaggcttaagaaacttagctgtcccaaatt 262  Q
    |||| ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||  | ||||| ||||||||||| || ||||| |    
T  31159836 gaggggaaatggatctaacctggagctgcatacccaaaagtgcctgcaaattgggtccaactaagtaaacctggctttagaaacttagccgttccaaagt 31159737  T
Q  263 cggagacatgagcttcatagtcaagattgagaagaatattcttgctcgatatatcacgatgaataataggaggtgagcaatcat 346  Q
    ||||||| |||||||||||||||||||| ||||| | |||||||||||||||||||||||||| ||||||||| || |||||||    
T  31159736 cggagacttgagcttcatagtcaagattaagaaggacattcttgctcgatatatcacgatgaacaataggaggagaacaatcat 31159653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 163 - 346
Target Start/End: Complemental strand, 31241939 - 31241756
Alignment:
Q  163 gaggagaaatggttctaacctggagctgcatacccaaaagtgcctgcaaattgtgtccaactatgtaagtcaggcttaagaaacttagctgtcccaaatt 262  Q
    |||| ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||  | ||||| ||||||||||| || ||||| |    
T  31241939 gaggggaaatggatctaacctggagctgcatacccaaaagtgcctgcaaattgggtccaactaagtaaacctggctttagaaacttagccgttccaaagt 31241840  T
Q  263 cggagacatgagcttcatagtcaagattgagaagaatattcttgctcgatatatcacgatgaataataggaggtgagcaatcat 346  Q
    ||||||| |||||||||||||||||||| ||||| | |||||||||||||||||||||||||| ||||||||| || |||||||    
T  31241839 cggagacttgagcttcatagtcaagattaagaaggacattcttgctcgatatatcacgatgaacaataggaggagaacaatcat 31241756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 168 - 344
Target Start/End: Complemental strand, 31184720 - 31184544
Alignment:
Q  168 gaaatggttctaacctggagctgcatacccaaaagtgcctgcaaattgtgtccaacta-tgtaagtcaggcttaagaaacttagctgtcccaaattcgga 266  Q
    |||||||||||||||||||||||||||||| | ||| |||||||| || |||| | || | | | |||||||| |||||||||||  |||| || |||||    
T  31184720 gaaatggttctaacctggagctgcataccctagagttcctgcaaaatgggtccgattagtctca-tcaggctttagaaacttagcgatcccgaagtcgga 31184622  T
Q  267 gacatgagcttcatagtcaagattgagaagaatattcttgctcgatatatcacgatgaataataggaggtgagcaatc 344  Q
    |||||||||||||||||||||||||| ||||| ||| || ||||||||||||||||||| ||||||||||||||||||    
T  31184621 gacatgagcttcatagtcaagattgataagaacatttttactcgatatatcacgatgaacaataggaggtgagcaatc 31184544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 232 - 343
Target Start/End: Original strand, 17825265 - 17825376
Alignment:
Q  232 tcaggcttaagaaacttagctgtcccaaattcggagacatgagcttcatagtcaagattgagaagaatattcttgctcgatatatcacgatgaataatag 331  Q
    ||||| ||||||| ||||||| | ||||| || |||||||||||  |||| || | ||| ||||| ||||||||||| |||||||| ||||||| ||| |    
T  17825265 tcaggattaagaagcttagctattccaaagtcagagacatgagccacatattccaaatttagaagtatattcttgcttgatatatctcgatgaacaattg 17825364  T
Q  332 gaggtgagcaat 343  Q
    ||||||||||||    
T  17825365 gaggtgagcaat 17825376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 292 - 346
Target Start/End: Complemental strand, 14606789 - 14606735
Alignment:
Q  292 agaagaatattcttgctcgatatatcacgatgaataataggaggtgagcaatcat 346  Q
    ||||||||||||||||| |||||||| ||||||| ||| ||||| ||||||||||    
T  14606789 agaagaatattcttgcttgatatatctcgatgaacaattggaggcgagcaatcat 14606735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 292 - 346
Target Start/End: Complemental strand, 16025966 - 16025912
Alignment:
Q  292 agaagaatattcttgctcgatatatcacgatgaataataggaggtgagcaatcat 346  Q
    ||||||||||||||||| |||||||| ||||||| ||| ||||| ||||||||||    
T  16025966 agaagaatattcttgcttgatatatctcgatgaacaattggaggcgagcaatcat 16025912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 292 - 346
Target Start/End: Complemental strand, 16173442 - 16173388
Alignment:
Q  292 agaagaatattcttgctcgatatatcacgatgaataataggaggtgagcaatcat 346  Q
    ||||||||||||||||| |||||||| ||||||| ||| ||||| ||||||||||    
T  16173442 agaagaatattcttgcttgatatatctcgatgaacaattggaggcgagcaatcat 16173388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 298 - 346
Target Start/End: Original strand, 15676310 - 15676358
Alignment:
Q  298 atattcttgctcgatatatcacgatgaataataggaggtgagcaatcat 346  Q
    ||||||||||| |||||||| ||||||| ||| ||||||||||||||||    
T  15676310 atattcttgcttgatatatctcgatgaacaattggaggtgagcaatcat 15676358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 343
Target Start/End: Complemental strand, 17849458 - 17849362
Alignment:
Q  247 ttagctgtcccaaattcggagacatgagcttcatagtcaagattgagaagaatattcttgctcgatatatcacgatgaataataggaggtgagcaat 343  Q
    |||||| | ||||| || |||||||||||| |||| || |  |  ||||| ||||||||||| |||||||| ||||||| ||| |||||||||||||    
T  17849458 ttagctattccaaagtcagagacatgagctacatattccaagtctagaagtatattcttgcttgatatatctcgatgaacaatcggaggtgagcaat 17849362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 292 - 346
Target Start/End: Original strand, 15664469 - 15664523
Alignment:
Q  292 agaagaatattcttgctcgatatatcacgatgaataataggaggtgagcaatcat 346  Q
    ||||||||||||||||| |||||||| ||||||| ||| ||||| | ||||||||    
T  15664469 agaagaatattcttgcttgatatatctcgatgaacaattggaggggtgcaatcat 15664523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 346
Target Start/End: Complemental strand, 16103826 - 16103720
Alignment:
Q  240 aagaaacttagctgtcccaaattcggagacatgagcttcatagtcaagattgagaagaatattcttgctcgatatatcacgatgaataataggaggtgag 339  Q
    ||||| ||||||||| ||||| || |||||| ||||  |||| || | ||  ||||||||||||||||| |||||||| |  |||| ||| ||||| |||    
T  16103826 aagaagcttagctgttccaaagtccgagacacgagccacatattctaaatccagaagaatattcttgcttgatatatctctgtgaacaattggaggcgag 16103727  T
Q  340 caatcat 346  Q
    |||||||    
T  16103726 caatcat 16103720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0289 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0289
Description:

Target: scaffold0289; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 346
Target Start/End: Original strand, 13576 - 13682
Alignment:
Q  240 aagaaacttagctgtcccaaattcggagacatgagcttcatagtcaagattgagaagaatattcttgctcgatatatcacgatgaataataggaggtgag 339  Q
    ||||| ||||||||| ||||| || |||||| ||||  |||| || | ||  ||||||||||||||||| |||||||| ||||||| ||| ||||| | |    
T  13576 aagaagcttagctgttccaaagtccgagacacgagccacatattctaaatccagaagaatattcttgcttgatatatctcgatgaacaattggaggggtg 13675  T
Q  340 caatcat 346  Q
    |||||||    
T  13676 caatcat 13682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0289; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 292 - 346
Target Start/End: Original strand, 4795 - 4849
Alignment:
Q  292 agaagaatattcttgctcgatatatcacgatgaataataggaggtgagcaatcat 346  Q
    ||||||||||||||||| |||||||| ||||||| ||| ||||| | ||||||||    
T  4795 agaagaatattcttgcttgatatatctcgatgaacaattggaggggtgcaatcat 4849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 241 - 346
Target Start/End: Original strand, 14521800 - 14521905
Alignment:
Q  241 agaaacttagctgtcccaaattcggagacatgagcttcatagtcaagattgagaagaatattcttgctcgatatatcacgatgaataataggaggtgagc 340  Q
    |||||||||| ||| ||||| || |||||||||||| || | || | ||  | || || ||||||||| |||||||| ||||||| ||||||||||||||    
T  14521800 agaaacttagatgttccaaagtctgagacatgagctacacattccaaatccaaaataacattcttgctggatatatctcgatgaacaataggaggtgagc 14521899  T
Q  341 aatcat 346  Q
    | ||||    
T  14521900 agtcat 14521905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 241 - 346
Target Start/End: Complemental strand, 15003043 - 15002938
Alignment:
Q  241 agaaacttagctgtcccaaattcggagacatgagcttcatagtcaagattgagaagaatattcttgctcgatatatcacgatgaataataggaggtgagc 340  Q
    |||||||||| ||| ||||| || |||||||||||| |||| || | ||  | || || ||||||||| |||||||| ||||||| ||||||||| || |    
T  15003043 agaaacttagatgttccaaaatctgagacatgagctacatattccaaatccaaaataacattcttgctggatatatctcgatgaacaataggaggggaac 15002944  T
Q  341 aatcat 346  Q
    ||||||    
T  15002943 aatcat 15002938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 241 - 346
Target Start/End: Complemental strand, 15011936 - 15011831
Alignment:
Q  241 agaaacttagctgtcccaaattcggagacatgagcttcatagtcaagattgagaagaatattcttgctcgatatatcacgatgaataataggaggtgagc 340  Q
    |||||||||| ||| ||||| || |||||||||||| |||| || | ||  | || || ||||||||| |||||||| ||||||| ||||||||| ||||    
T  15011936 agaaacttagatgttccaaagtctgagacatgagctacatattccaaatccaaaataacattcttgctggatatatctcgatgaacaataggaggcgagc 15011837  T
Q  341 aatcat 346  Q
    | ||||    
T  15011836 agtcat 15011831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 241 - 346
Target Start/End: Complemental strand, 15037955 - 15037850
Alignment:
Q  241 agaaacttagctgtcccaaattcggagacatgagcttcatagtcaagattgagaagaatattcttgctcgatatatcacgatgaataataggaggtgagc 340  Q
    |||||||||| ||| ||||| || |||||||||||| |||| || | ||  | || || ||||||||| |||||||| ||||||| ||||||||| || |    
T  15037955 agaaacttagatgttccaaagtctgagacatgagctacatattccatatccaaaataacattcttgctggatatatctcgatgaacaataggaggggaac 15037856  T
Q  341 aatcat 346  Q
    ||||||    
T  15037855 aatcat 15037850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 346
Target Start/End: Complemental strand, 14504921 - 14504813
Alignment:
Q  238 ttaagaaacttagctgtcccaaattcggagacatgagcttcatagtcaagattgagaagaatattcttgctcgatatatcacgatgaataataggaggtg 337  Q
    ||||||||||||||||| || || || |||||||||||  |||| || | ||  | || ||||||||| ||||||||||| ||||||| ||| | |||||    
T  14504921 ttaagaaacttagctgttccgaaatccgagacatgagccacatattccaaatccaaaacaatattcttactcgatatatcgcgatgaacaattgcaggtg 14504822  T
Q  338 agcaatcat 346  Q
    ||| |||||    
T  14504821 agcgatcat 14504813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 243 - 346
Target Start/End: Complemental strand, 15041521 - 15041418
Alignment:
Q  243 aaacttagctgtcccaaattcggagacatgagcttcatagtcaagattgagaagaatattcttgctcgatatatcacgatgaataataggaggtgagcaa 342  Q
    |||||||| ||| ||||| || |||||||||||| |||| || | ||  | || || ||||||||| |||||||| ||||||| ||||||||| || |||    
T  15041521 aaacttagatgttccaaagtctgagacatgagctacatattccaaatccaaaataacattcttgctggatatatctcgatgaacaataggaggggaacaa 15041422  T
Q  343 tcat 346  Q
    ||||    
T  15041421 tcat 15041418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 300 - 346
Target Start/End: Original strand, 14531980 - 14532026
Alignment:
Q  300 attcttgctcgatatatcacgatgaataataggaggtgagcaatcat 346  Q
    ||||||||| |||||||| ||||||| ||||||||||||||| ||||    
T  14531980 attcttgctggatatatctcgatgaacaataggaggtgagcagtcat 14532026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 346
Target Start/End: Complemental strand, 15018051 - 15017946
Alignment:
Q  241 agaaacttagctgtcccaaattcggagacatgagcttcatagtcaagattgagaagaatattcttgctcgatatatcacgatgaataataggaggtgagc 340  Q
    |||||||||| ||| ||||| || |||||||||||| |||| || | ||  | || || ||||||||| |||||||| |||||||  |||||||| || |    
T  15018051 agaaacttagatgttccaaaatctgagacatgagctacatattccaaatccaaaataacattcttgctggatatatctcgatgaactataggaggggaac 15017952  T
Q  341 aatcat 346  Q
    ||||||    
T  15017951 aatcat 15017946  T

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