View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15575_low_23 (Length: 332)
Name: NF15575_low_23
Description: NF15575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15575_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 21 - 319
Target Start/End: Original strand, 49298199 - 49298488
Alignment:
| Q |
21 |
accaagacattgaatttcttccttattccgtgcaaaacttccctgttttgggcgggaaatcaagttaatacctttttcgtttttgatcatgatcctcacg |
120 |
Q |
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| T |
49298199 |
accaagacattgaatttcttccttattccgtgcaaaacttccctgttttgggcgggaaatcaagttaatacctttttcgttttcgatcatgatcctcacg |
49298298 |
T |
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| Q |
121 |
cggttaagagagtcatttcaataacattattcacagggtcaaaatagtcattagagtttacactcgttcaaatattgacgacannnnnnnnnnnnnnnac |
220 |
Q |
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|||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
49298299 |
cggttaagagagtcatttcaattac---attcacagggtcaaaatagtcattagagtttacactcgttcaaatattgacgac-----ggtgcccccctcc |
49298390 |
T |
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| Q |
221 |
atatacaatgatatcggtaacaaaaaagtttctaaacagaaagatatgatcacatctatatctccatcactataccatagctcacattcacttcatctc |
319 |
Q |
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|||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
49298391 |
atatacaatgat-tcgataacaaaaaagtttctaaacagaaagatatgataacatctatatctccatcactataccatagctcatattcacttcatctc |
49298488 |
T |
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