View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15575_low_24 (Length: 331)
Name: NF15575_low_24
Description: NF15575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15575_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 103; Significance: 3e-51; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 126 - 276
Target Start/End: Complemental strand, 32241755 - 32241606
Alignment:
| Q |
126 |
aaccaagatagaaatactaatagcagcttaacatactcaacatagacatttttgcagttcagaaataaaaaaggtgtaaactaaccatgttggataacga |
225 |
Q |
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| T |
32241755 |
aaccaagatagaaatactaattgcagcttaacatactcaacatagacgtttttgcagttcacaaataaaaaaggtgtaaactaaccatgttggataacga |
32241656 |
T |
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| Q |
226 |
tcaaccacaacctgcatctgaaacaacaactcatatcagctcctttttgca |
276 |
Q |
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| T |
32241655 |
tcaaccacaatctgcatccg-aataacaacccatatctggttctttttgca |
32241606 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 271 - 316
Target Start/End: Complemental strand, 32241157 - 32241109
Alignment:
| Q |
271 |
tttgcaaataaatatgc---agagcaaaagaaagaaagataaatataac |
316 |
Q |
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| T |
32241157 |
tttgcaaataaatatgctggagagcaaaagaaagaaagataaatttaac |
32241109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 188 - 243
Target Start/End: Complemental strand, 23044044 - 23043989
Alignment:
| Q |
188 |
aaataaaaaaggtgtaaactaaccatgttggataacgatcaaccacaacctgcatc |
243 |
Q |
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| T |
23044044 |
aaatcaaaaaggttaagactaaccacgtcggataacgatcaaccacaacctgcatc |
23043989 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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