View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15575_low_3 (Length: 562)

Name: NF15575_low_3
Description: NF15575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15575_low_3
NF15575_low_3
[»] chr2 (7 HSPs)
chr2 (9-391)||(1239157-1239542)
chr2 (410-459)||(39240864-39240913)
chr2 (410-446)||(9244253-9244289)
chr2 (410-465)||(16591530-16591585)
chr2 (410-464)||(18767574-18767628)
chr2 (410-478)||(5483904-5483973)
chr2 (410-461)||(9244003-9244054)
[»] chr1 (7 HSPs)
chr1 (410-531)||(16801982-16802104)
chr1 (410-530)||(16802620-16802741)
chr1 (410-461)||(17239414-17239465)
chr1 (410-465)||(42026905-42026960)
chr1 (410-465)||(42031697-42031752)
chr1 (410-460)||(17238606-17238656)
chr1 (410-465)||(34267985-34268040)
[»] chr6 (8 HSPs)
chr6 (410-531)||(29374980-29375102)
chr6 (410-465)||(19237607-19237662)
chr6 (410-447)||(8683878-8683915)
chr6 (413-465)||(17280703-17280755)
chr6 (410-479)||(17279893-17279963)
chr6 (410-465)||(10793583-10793638)
chr6 (410-447)||(5860559-5860596)
chr6 (410-465)||(7001777-7001832)
[»] chr7 (13 HSPs)
chr7 (410-465)||(5997615-5997670)
chr7 (410-465)||(1409385-1409440)
chr7 (410-465)||(27268246-27268301)
chr7 (410-459)||(38887340-38887389)
chr7 (410-477)||(41970897-41970965)
chr7 (410-461)||(5995262-5995313)
chr7 (410-477)||(45551007-45551075)
chr7 (410-477)||(45551796-45551864)
chr7 (410-465)||(27258111-27258167)
chr7 (410-445)||(28778123-28778158)
chr7 (498-531)||(27258046-27258079)
chr7 (498-531)||(27268178-27268211)
chr7 (423-456)||(27875955-27875988)
[»] scaffold0015 (1 HSPs)
scaffold0015 (410-464)||(45342-45396)
[»] chr8 (11 HSPs)
chr8 (410-465)||(16106028-16106083)
chr8 (410-465)||(16113268-16113323)
chr8 (410-465)||(16101532-16101587)
chr8 (410-465)||(30971294-30971349)
chr8 (410-461)||(5152461-5152512)
chr8 (410-461)||(30972014-30972065)
chr8 (410-459)||(12836707-12836756)
chr8 (410-459)||(42757615-42757664)
chr8 (410-449)||(1274127-1274166)
chr8 (410-479)||(23220017-23220087)
chr8 (410-477)||(42758394-42758462)
[»] chr4 (17 HSPs)
chr4 (410-465)||(31914532-31914587)
chr4 (410-480)||(48314376-48314447)
chr4 (410-463)||(31689186-31689239)
chr4 (410-477)||(23088285-23088353)
chr4 (410-477)||(23089261-23089329)
chr4 (410-465)||(12206773-12206828)
chr4 (410-465)||(12210922-12210977)
chr4 (410-465)||(31135179-31135234)
chr4 (410-460)||(31908362-31908412)
chr4 (410-465)||(20627536-20627591)
chr4 (410-465)||(42523889-42523944)
chr4 (424-465)||(6310842-6310883)
chr4 (424-461)||(6311792-6311829)
chr4 (410-463)||(20628344-20628397)
chr4 (413-461)||(42523214-42523262)
chr4 (410-461)||(34978353-34978404)
chr4 (410-461)||(48315193-48315244)
[»] chr3 (12 HSPs)
chr3 (410-465)||(17619148-17619203)
chr3 (410-463)||(27359841-27359894)
chr3 (410-465)||(4300942-4300997)
chr3 (414-465)||(17615035-17615086)
chr3 (410-461)||(27317483-27317534)
chr3 (410-464)||(28422850-28422904)
chr3 (419-465)||(33148303-33148348)
chr3 (410-447)||(54285837-54285874)
chr3 (410-461)||(40929865-40929916)
chr3 (410-480)||(51341883-51341954)
chr3 (410-447)||(29032826-29032863)
chr3 (424-465)||(33147355-33147396)
[»] scaffold0676 (1 HSPs)
scaffold0676 (410-459)||(3171-3220)
[»] chr5 (4 HSPs)
chr5 (410-461)||(33471174-33471225)
chr5 (413-462)||(22671618-22671667)
chr5 (410-459)||(30667873-30667922)
chr5 (410-461)||(33471861-33471912)
[»] scaffold0112 (1 HSPs)
scaffold0112 (410-448)||(24737-24775)


Alignment Details
Target: chr2 (Bit Score: 364; Significance: 0; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 9 - 391
Target Start/End: Complemental strand, 1239542 - 1239157
Alignment:
Q  9 gcagagagcatgaattaatatatatggtggagttattgaagaggtggaaatggagaagttacaaatagagtaattaagttaatatctcactgagtttcat 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  1239542 gcagagagcatgaattaatatatatggtggagttattgaagaggtggaaatggagaagttacaaatagagtaatcaagttaatatctcactgagtttcat 1239443  T
Q  109 gcatagcagcatgcagtagaggcaaacccttattattgaggcccacgaagaccaatttcgcacgtgtcaaataagaagctaaaacgtgtaagtttttcta 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1239442 gcatagcagcatgcagtagaggcaaacccttattattgaggcccacgaagaccaatttcgcacgtgtcaaataagaagctaaaacgtgtaagtttttcta 1239343  T
Q  209 tagtaacaacgtagatgatgacgtgtaagtaaccaaacaaacgaacactgccgctttaattcacctttggaat---cttcattcactataaatacagaca 305  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||   ||||||||||||||||||||||||    
T  1239342 tagtaacaacgtagatgatgacgtgtaagtaaccaaacaaacaaacactgccgctttaattcacctttggaatcttcttcattcactataaatacagaca 1239243  T
Q  306 cacccttctttgtttcatttcatctcatgcatgtgtcacttaatattcactctcttaattaagtgaaatttcaacgtaaatatata 391  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1239242 cacccttctttgtttcatttcatctcatgcatgtgtcacttaatattcactctcttaattaagtgaaatttcaacgtaaatatata 1239157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 410 - 459
Target Start/End: Complemental strand, 39240913 - 39240864
Alignment:
Q  410 atagacccactcattttcatgaaggtctattttagcaaggagcacctttt 459  Q
    |||||||||| ||||||||||||||||||||||||||||  |||||||||    
T  39240913 atagacccacccattttcatgaaggtctattttagcaagatgcacctttt 39240864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 410 - 446
Target Start/End: Original strand, 9244253 - 9244289
Alignment:
Q  410 atagacccactcattttcatgaaggtctattttagca 446  Q
    ||||||||||||||||| |||||||||||||||||||    
T  9244253 atagacccactcatttttatgaaggtctattttagca 9244289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 410 - 465
Target Start/End: Complemental strand, 16591585 - 16591530
Alignment:
Q  410 atagacccactcattttcatgaaggtctattttagcaaggagcaccttttcacttg 465  Q
    ||||||||| | | ||||||||||||||||||||||||  | ||||||||||||||    
T  16591585 atagacccatttaatttcatgaaggtctattttagcaaccaacaccttttcacttg 16591530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 410 - 464
Target Start/End: Complemental strand, 18767628 - 18767574
Alignment:
Q  410 atagacccactcattttcatgaaggtctattttagcaaggagcaccttttcactt 464  Q
    |||||| |||||||||| || |||||||||||||||||  | |||||||||||||    
T  18767628 atagactcactcatttttataaaggtctattttagcaaccaacaccttttcactt 18767574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 410 - 478
Target Start/End: Complemental strand, 5483973 - 5483904
Alignment:
Q  410 atagacccactcattttcatgaaggtctattttagcaaggagcaccttttcactt-gacaaaaataccca 478  Q
    ||||||| |||||||||||| ||||||||||||||||   | |||||||||| || |||||||| |||||    
T  5483973 atagaccaactcattttcataaaggtctattttagcatccaacaccttttcaattggacaaaaacaccca 5483904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 410 - 461
Target Start/End: Original strand, 9244003 - 9244054
Alignment:
Q  410 atagacccac-tcattttcatgaaggtctattttagcaaggagcaccttttca 461  Q
    |||||||||| ||||||| |||||||||||||||||||  |||||||||||||    
T  9244003 atagacccacttcatttt-atgaaggtctattttagcaccgagcaccttttca 9244054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 71; Significance: 7e-32; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 410 - 531
Target Start/End: Original strand, 16801982 - 16802104
Alignment:
Q  410 atagacccactcattttcatgaaggtctattttagcaaggagcaccttttcactt-gacaaaaatacccatgnnnnnnnnnnnngaaccaattaaaatta 508  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||            ||||||||||||||||    
T  16801982 atagacccactcattttcatgaaggtctattttagcaaggggcaccttttcacttggacaaaaatacccatgtttttgttttttgaaccaattaaaatta 16802081  T
Q  509 aaggacacaattgtaattgtcag 531  Q
     ||||||||||||||||||||||    
T  16802082 taggacacaattgtaattgtcag 16802104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 410 - 530
Target Start/End: Complemental strand, 16802741 - 16802620
Alignment:
Q  410 atagacccactcattttcatgaaggtctattttagcaaggagcaccttttcactt-gacaaaaatacccatgnnnnnnnnnnnngaaccaattaaaatta 508  Q
    ||||||||||||||||| || |||||||||||||||||| || |||||||||||| |||||||  ||||||             ||||||||||||||||    
T  16802741 atagacccactcatttttataaaggtctattttagcaagaagtaccttttcacttggacaaaaggacccatatttttgttttttgaaccaattaaaatta 16802642  T
Q  509 aaggacacaattgtaattgtca 530  Q
    |||||||||| |||||||||||    
T  16802641 aaggacacaaatgtaattgtca 16802620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 410 - 461
Target Start/End: Complemental strand, 17239465 - 17239414
Alignment:
Q  410 atagacccactcattttcatgaaggtctattttagcaaggagcaccttttca 461  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  17239465 atagacccactcatttttatgaaggtctattttagcaagtagcaccttttca 17239414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 410 - 465
Target Start/End: Original strand, 42026905 - 42026960
Alignment:
Q  410 atagacccactcattttcatgaaggtctattttagcaaggagcaccttttcacttg 465  Q
    ||||||||||||||||||||||||||||||||||||||   |||||||||||||||    
T  42026905 atagacccactcattttcatgaaggtctattttagcaacctgcaccttttcacttg 42026960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 410 - 465
Target Start/End: Complemental strand, 42031752 - 42031697
Alignment:
Q  410 atagacccactcattttcatgaaggtctattttagcaaggagcaccttttcacttg 465  Q
    ||||||||||||||||||||||||||||||||||||||   |||||||||||||||    
T  42031752 atagacccactcattttcatgaaggtctattttagcaacctgcaccttttcacttg 42031697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 410 - 460
Target Start/End: Original strand, 17238606 - 17238656
Alignment:
Q  410 atagacccactcattttcatgaaggtctattttagcaaggagcaccttttc 460  Q
    ||||||||||||||||| ||||||||||||||||||||| |||||||||||    
T  17238606 atagacccactcatttttatgaaggtctattttagcaagtagcaccttttc 17238656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 410 - 465
Target Start/End: Original strand, 34267985 - 34268040
Alignment:
Q  410 atagacccactcattttcatgaaggtctattttagcaaggagcaccttttcacttg 465  Q
    ||||||||||||  ||| || |||||||||||||||||| | ||||||||||||||    
T  34267985 atagacccactccattttatcaaggtctattttagcaagcaacaccttttcacttg 34268040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 2e-29; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 410 - 531
Target Start/End: Complemental strand, 29375102 - 29374980
Alignment:
Q  410 atagacccactcattttcatgaaggtctattttagcaaggagcaccttttcactt-gacaaaaatacccatgnnnnnnnnnnnngaaccaattaaaatta 508  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |||||            ||||||||||||||||    
T  29375102 atagatccactcattttcatgaaggtccattttagcaaggagcaccttttcacttggacaaaaatatccatgtttttgttttttgaaccaattaaaatta 29375003  T
Q  509 aaggacacaattgtaattgtcag 531  Q
    |||||||||||||||||||||||    
T  29375002 aaggacacaattgtaattgtcag 29374980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 410 - 465
Target Start/End: Complemental strand, 19237662 - 19237607
Alignment:
Q  410 atagacccactcattttcatgaaggtctattttagcaaggagcaccttttcacttg 465  Q
    ||||||||||||||||||||||||||||||||||||||  | ||||||||||||||    
T  19237662 atagacccactcattttcatgaaggtctattttagcaaccaacaccttttcacttg 19237607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 410 - 447
Target Start/End: Complemental strand, 8683915 - 8683878
Alignment:
Q  410 atagacccactcattttcatgaaggtctattttagcaa 447  Q
    ||||||||||||||||||||||||||||||||||||||    
T  8683915 atagacccactcattttcatgaaggtctattttagcaa 8683878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 413 - 465
Target Start/End: Complemental strand, 17280755 - 17280703
Alignment:
Q  413 gacccactcattttcatgaaggtctattttagcaaggagcaccttttcacttg 465  Q
    ||||||||||||||||| |||||||||||||||||  | ||||||||||||||    
T  17280755 gacccactcattttcattaaggtctattttagcaaccaacaccttttcacttg 17280703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 410 - 479
Target Start/End: Original strand, 17279893 - 17279963
Alignment:
Q  410 atagacccactcattttcatgaaggtctattttagcaaggagcaccttttcactt-gacaaaaatacccat 479  Q
    ||||||| | ||||||| ||||||||||||||||||||  |||||||||| |||| |||| ||||||||||    
T  17279893 atagacctattcatttttatgaaggtctattttagcaaccagcacctttttacttggacacaaatacccat 17279963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 410 - 465
Target Start/End: Complemental strand, 10793638 - 10793583
Alignment:
Q  410 atagacccactcattttcatgaaggtctattttagcaaggagcaccttttcacttg 465  Q
    ||||||||||||  ||| || |||||||||||||||||| | ||||||||||||||    
T  10793638 atagacccactccattttatcaaggtctattttagcaagcaacaccttttcacttg 10793583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 410 - 447
Target Start/End: Original strand, 5860559 - 5860596
Alignment:
Q  410 atagacccactcattttcatgaaggtctattttagcaa 447  Q
    ||||||||||||||||| |||||||| |||||||||||    
T  5860559 atagacccactcatttttatgaaggtgtattttagcaa 5860596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 410 - 465
Target Start/End: Complemental strand, 7001832 - 7001777
Alignment:
Q  410 atagacccact-cattttcatgaaggtctattttagcaaggagcaccttttcacttg 465  Q
    ||||||||||| |||||| ||||||||||||||||||| | | ||||||||||||||    
T  7001832 atagacccacttcatttt-atgaaggtctattttagcatgcaacaccttttcacttg 7001777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 4e-18; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 410 - 465
Target Start/End: Complemental strand, 5997670 - 5997615
Alignment:
Q  410 atagacccactcattttcatgaaggtctattttagcaaggagcaccttttcacttg 465  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  5997670 atagacccactcattttcatgaaggtctattttagcaaccagcaccttttcacttg 5997615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 410 - 465
Target Start/End: Original strand, 1409385 - 1409440
Alignment:
Q  410 atagacccactcattttcatgaaggtctattttagcaaggagcaccttttcacttg 465  Q
    ||||||||||||||||| |||||||||||||||||||||| |||||||||| ||||    
T  1409385 atagacccactcatttttatgaaggtctattttagcaaggtgcaccttttctcttg 1409440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 410 - 465
Target Start/End: Complemental strand, 27268301 - 27268246
Alignment:
Q  410 atagacccactcattttcatgaaggtctattttagcaaggagcaccttttcacttg 465  Q
    ||||| ||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  27268301 atagatccactcattttcatgaaggtctattttagcaatcagcaccttttcacttg 27268246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 410 - 459
Target Start/End: Original strand, 38887340 - 38887389
Alignment:
Q  410 atagacccactcattttcatgaaggtctattttagcaaggagcacctttt 459  Q
    |||||| ||||||||||||||||||||||||||||||||| |||||||||    
T  38887340 atagactcactcattttcatgaaggtctattttagcaaggtgcacctttt 38887389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 410 - 477
Target Start/End: Original strand, 41970897 - 41970965
Alignment:
Q  410 atagacccactcattttcatgaaggtctattttagcaaggagcaccttttcactt-gacaaaaataccc 477  Q
    |||||||||||||||||||||||| |||||||||||||  | ||||||||||||| ||||| |||||||    
T  41970897 atagacccactcattttcatgaagatctattttagcaaccaacaccttttcacttggacaagaataccc 41970965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 410 - 461
Target Start/End: Original strand, 5995262 - 5995313
Alignment:
Q  410 atagacccactcattttcatgaaggtctattttagcaaggagcaccttttca 461  Q
    ||||||||||||||||||||||||||||||||||||||  | ||||||||||    
T  5995262 atagacccactcattttcatgaaggtctattttagcaaccaacaccttttca 5995313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 410 - 477
Target Start/End: Original strand, 45551007 - 45551075
Alignment:
Q  410 atagacccactcattttcatgaaggtctattttagcaaggagcaccttttca-cttgacaaaaataccc 477  Q
    ||||||||||||| ||||||||||||||||||||||||  | ||||||||||  |||||||||| ||||    
T  45551007 atagacccactcaatttcatgaaggtctattttagcaaccaacaccttttcattttgacaaaaagaccc 45551075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 410 - 477
Target Start/End: Complemental strand, 45551864 - 45551796
Alignment:
Q  410 atagacccactcattttcatgaaggtctattttagcaaggagcaccttttca-cttgacaaaaataccc 477  Q
    ||||||||||||| ||||||||||||||||||||||||  | ||||||||||  |||||||||| ||||    
T  45551864 atagacccactcaatttcatgaaggtctattttagcaaccaacaccttttcattttgacaaaaagaccc 45551796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 410 - 465
Target Start/End: Complemental strand, 27258167 - 27258111
Alignment:
Q  410 atagacccactcattttcatgaagg-tctattttagcaaggagcaccttttcacttg 465  Q
    ||||| ||||||||||||||||||| |||||||||||||  | ||||||||||||||    
T  27258167 atagatccactcattttcatgaagggtctattttagcaatcaacaccttttcacttg 27258111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 410 - 445
Target Start/End: Complemental strand, 28778158 - 28778123
Alignment:
Q  410 atagacccactcattttcatgaaggtctattttagc 445  Q
    |||||||||||||||||||| |||||||||||||||    
T  28778158 atagacccactcattttcatcaaggtctattttagc 28778123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 498 - 531
Target Start/End: Complemental strand, 27258079 - 27258046
Alignment:
Q  498 aattaaaattaaaggacacaattgtaattgtcag 531  Q
    ||||||||||||||||||||| ||||||||||||    
T  27258079 aattaaaattaaaggacacaaatgtaattgtcag 27258046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 498 - 531
Target Start/End: Complemental strand, 27268211 - 27268178
Alignment:
Q  498 aattaaaattaaaggacacaattgtaattgtcag 531  Q
    ||||||||||||||||||||| ||||||||||||    
T  27268211 aattaaaattaaaggacacaactgtaattgtcag 27268178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 423 - 456
Target Start/End: Original strand, 27875955 - 27875988
Alignment:
Q  423 ttttcatgaaggtctattttagcaaggagcacct 456  Q
    ||||||||||||||||||||||||||| ||||||    
T  27875955 ttttcatgaaggtctattttagcaaggtgcacct 27875988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 410 - 464
Target Start/End: Original strand, 45342 - 45396
Alignment:
Q  410 atagacccactcattttcatgaaggtctattttagcaaggagcaccttttcactt 464  Q
    |||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  45342 atagacccactcattttcatgaaggtctattttagcaagatgcaccttttcactt 45396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 9e-16; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 410 - 465
Target Start/End: Complemental strand, 16106083 - 16106028
Alignment:
Q  410 atagacccactcattttcatgaaggtctattttagcaaggagcaccttttcacttg 465  Q
    ||||||||||||||||||||||||||||||||||||||   |||||||||||||||    
T  16106083 atagacccactcattttcatgaaggtctattttagcaacctgcaccttttcacttg 16106028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 410 - 465
Target Start/End: Complemental strand, 16113323 - 16113268
Alignment:
Q  410 atagacccactcattttcatgaaggtctattttagcaaggagcaccttttcacttg 465  Q
    ||||||||||||||||||||||||||||||||||||||   |||||||||||||||    
T  16113323 atagacccactcattttcatgaaggtctattttagcaacctgcaccttttcacttg 16113268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 410 - 465
Target Start/End: Original strand, 16101532 - 16101587
Alignment:
Q  410 atagacccactcattttcatgaaggtctattttagcaaggagcaccttttcacttg 465  Q
    |||||| |||||||||||||||||||||||||||||||   |||||||||||||||    
T  16101532 atagacacactcattttcatgaaggtctattttagcaacctgcaccttttcacttg 16101587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 410 - 465
Target Start/End: Original strand, 30971294 - 30971349
Alignment:
Q  410 atagacccactcattttcatgaaggtctattttagcaaggagcaccttttcacttg 465  Q
    ||||||||||||||||||||||||||||||||||||||  | ||| ||||||||||    
T  30971294 atagacccactcattttcatgaaggtctattttagcaaccatcactttttcacttg 30971349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 410 - 461
Target Start/End: Complemental strand, 5152512 - 5152461
Alignment:
Q  410 atagacccactcattttcatgaaggtctattttagcaaggagcaccttttca 461  Q
    |||||||| |||||||| |||||||||||||||||||||  |||||||||||    
T  5152512 atagacccgctcatttttatgaaggtctattttagcaagtggcaccttttca 5152461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 410 - 461
Target Start/End: Complemental strand, 30972065 - 30972014
Alignment:
Q  410 atagacccactcattttcatgaaggtctattttagcaaggagcaccttttca 461  Q
    ||||||||||||| ||||||||||||||||||||||||  | ||||||||||    
T  30972065 atagacccactcaatttcatgaaggtctattttagcaaccaacaccttttca 30972014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 410 - 459
Target Start/End: Original strand, 12836707 - 12836756
Alignment:
Q  410 atagacccactcattttcatgaaggtctattttagcaaggagcacctttt 459  Q
    ||||||||||   ||||||||||||||||||||||||||| |||||||||    
T  12836707 atagacccacattttttcatgaaggtctattttagcaaggtgcacctttt 12836756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 410 - 459
Target Start/End: Original strand, 42757615 - 42757664
Alignment:
Q  410 atagacccactcattttcatgaaggtctattttagcaaggagcacctttt 459  Q
    ||||||||||||||||| |||||||| ||||||||||||  |||||||||    
T  42757615 atagacccactcatttttatgaaggtttattttagcaagctgcacctttt 42757664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 410 - 449
Target Start/End: Complemental strand, 1274166 - 1274127
Alignment:
Q  410 atagacccactcattttcatgaaggtctattttagcaagg 449  Q
    ||||||| ||| ||||||||||||||||||||||||||||    
T  1274166 atagaccaacttattttcatgaaggtctattttagcaagg 1274127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 410 - 479
Target Start/End: Original strand, 23220017 - 23220087
Alignment:
Q  410 atagacccactcattttcatgaaggtctattttagcaaggagcacc-ttttcacttgacaaaaatacccat 479  Q
    |||||||||| | |||| |||||||||||||||||||||  ||||| |||||  |||||| ||||||||||    
T  23220017 atagacccacccttttttatgaaggtctattttagcaagctgcacctttttcttttgacataaatacccat 23220087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 410 - 477
Target Start/End: Complemental strand, 42758462 - 42758394
Alignment:
Q  410 atagacccactcattttcatgaaggtctattttagcaaggagcaccttttcacttg-acaaaaataccc 477  Q
    |||||||||||||||   |||||||||||||||||||||  |||| |||||  ||| ||||||||||||    
T  42758462 atagacccactcattaatatgaaggtctattttagcaagctgcacattttcctttgtacaaaaataccc 42758394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 9e-16; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 410 - 465
Target Start/End: Original strand, 31914532 - 31914587
Alignment:
Q  410 atagacccactcattttcatgaaggtctattttagcaaggagcaccttttcacttg 465  Q
    |||||||||||||||||||||||| |||||||||||||  ||||||||||||||||    
T  31914532 atagacccactcattttcatgaagatctattttagcaaccagcaccttttcacttg 31914587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 410 - 480
Target Start/End: Original strand, 48314376 - 48314447
Alignment:
Q  410 atagacccactcattttcatgaaggtctattttagcaaggagcaccttttcactt-gacaaaaatacccatg 480  Q
    ||||||||||||||||||||||| ||||||||||||||| | |||||||||| || ||| ||||||||||||    
T  48314376 atagacccactcattttcatgaaagtctattttagcaagcaacaccttttcatttagactaaaatacccatg 48314447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 410 - 463
Target Start/End: Original strand, 31689186 - 31689239
Alignment:
Q  410 atagacccactcattttcatgaaggtctattttagcaaggagcaccttttcact 463  Q
    ||||||||||||||||||||||||||||||||||||||   |||||||||||||    
T  31689186 atagacccactcattttcatgaaggtctattttagcaacctgcaccttttcact 31689239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 410 - 477
Target Start/End: Original strand, 23088285 - 23088353
Alignment:
Q  410 atagacccactcattttcatgaaggtctattttagcaaggagcaccttttcactt-gacaaaaataccc 477  Q
    ||||||||||||||||||||||||||||||||||||||  | |||||| |||||| ||||| |||||||    
T  23088285 atagacccactcattttcatgaaggtctattttagcaaccaacaccttctcacttcgacaagaataccc 23088353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 410 - 477
Target Start/End: Complemental strand, 23089329 - 23089261
Alignment:
Q  410 atagacccactcattttcatgaaggtctattttagcaaggagcaccttttcactt-gacaaaaataccc 477  Q
    ||||||||||||||||||||| ||||||||||||||||  | ||||||||||||| ||||| |||||||    
T  23089329 atagacccactcattttcatgtaggtctattttagcaaccaacaccttttcacttggacaagaataccc 23089261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 410 - 465
Target Start/End: Original strand, 12206773 - 12206828
Alignment:
Q  410 atagacccactcattttcatgaaggtctattttagcaaggagcaccttttcacttg 465  Q
    ||||||||||||||||| ||||||||||||||||||||   |||||||||||||||    
T  12206773 atagacccactcatttttatgaaggtctattttagcaacctgcaccttttcacttg 12206828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 410 - 465
Target Start/End: Complemental strand, 12210977 - 12210922
Alignment:
Q  410 atagacccactcattttcatgaaggtctattttagcaaggagcaccttttcacttg 465  Q
    ||||||| ||||||||||||||||||||||||||||||   |||||||||||||||    
T  12210977 atagaccaactcattttcatgaaggtctattttagcaacctgcaccttttcacttg 12210922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 410 - 465
Target Start/End: Original strand, 31135179 - 31135234
Alignment:
Q  410 atagacccactcattttcatgaaggtctattttagcaaggagcaccttttcacttg 465  Q
    ||||||| ||||||||||||||||||||||||||||||  | ||||||||||||||    
T  31135179 atagaccaactcattttcatgaaggtctattttagcaaccaacaccttttcacttg 31135234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 410 - 460
Target Start/End: Complemental strand, 31908412 - 31908362
Alignment:
Q  410 atagacccactcattttcatgaaggtctattttagcaaggagcaccttttc 460  Q
    ||||||||||||||||| |||||||||||||||||||||  ||||||||||    
T  31908412 atagacccactcatttttatgaaggtctattttagcaagttgcaccttttc 31908362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 410 - 465
Target Start/End: Original strand, 20627536 - 20627591
Alignment:
Q  410 atagacccactcattttcatgaaggtctattttagcaaggagcaccttttcacttg 465  Q
    ||||||||||||||||||||||| |||||||||||||   | ||||||||||||||    
T  20627536 atagacccactcattttcatgaaagtctattttagcacccaacaccttttcacttg 20627591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 410 - 465
Target Start/End: Complemental strand, 42523944 - 42523889
Alignment:
Q  410 atagacccactcattttcatgaaggtctattttagcaaggagcaccttttcacttg 465  Q
    |||||| |||||||||||||||| |||| |||||||||| | ||||||||||||||    
T  42523944 atagactcactcattttcatgaaagtctgttttagcaagtaacaccttttcacttg 42523889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 424 - 465
Target Start/End: Original strand, 6310842 - 6310883
Alignment:
Q  424 tttcatgaaggtctattttagcaaggagcaccttttcacttg 465  Q
    ||||||||||||||||||||| |||| |||||||||||||||    
T  6310842 tttcatgaaggtctattttaggaaggtgcaccttttcacttg 6310883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 424 - 461
Target Start/End: Complemental strand, 6311829 - 6311792
Alignment:
Q  424 tttcatgaaggtctattttagcaaggagcaccttttca 461  Q
    |||||||||||||||||||||||||| |||||||||||    
T  6311829 tttcatgaaggtctattttagcaaggtgcaccttttca 6311792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 410 - 463
Target Start/End: Complemental strand, 20628397 - 20628344
Alignment:
Q  410 atagacccactcattttcatgaaggtctattttagcaaggagcaccttttcact 463  Q
    |||||||||| |||||| |||||||||||||||| |||| | ||||||||||||    
T  20628397 atagacccacccatttttatgaaggtctattttaccaagcaacaccttttcact 20628344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 413 - 461
Target Start/End: Original strand, 42523214 - 42523262
Alignment:
Q  413 gacccactcattttcatgaaggtctattttagcaaggagcaccttttca 461  Q
    |||||||||||||| |||||||||| |||||||||| | ||||||||||    
T  42523214 gacccactcatttttatgaaggtctcttttagcaagtaacaccttttca 42523262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 410 - 461
Target Start/End: Original strand, 34978353 - 34978404
Alignment:
Q  410 atagacccactcattttcatgaaggtctattttagcaaggagcaccttttca 461  Q
    ||||||||||||||||| |||||||||||||||| |||  | ||||||||||    
T  34978353 atagacccactcatttttatgaaggtctattttatcaaccaacaccttttca 34978404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 410 - 461
Target Start/End: Complemental strand, 48315244 - 48315193
Alignment:
Q  410 atagacccactcattttcatgaaggtctattttagcaaggagcaccttttca 461  Q
    ||||||||||| |||||||| ||||| |||||||||||| | ||||||||||    
T  48315244 atagacccacttattttcataaaggtttattttagcaagcaacaccttttca 48315193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 9e-16; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 410 - 465
Target Start/End: Complemental strand, 17619203 - 17619148
Alignment:
Q  410 atagacccactcattttcatgaaggtctattttagcaaggagcaccttttcacttg 465  Q
    ||||||||||||||||||||||||||||||||||||||  || |||||||||||||    
T  17619203 atagacccactcattttcatgaaggtctattttagcaaccagtaccttttcacttg 17619148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 410 - 463
Target Start/End: Complemental strand, 27359894 - 27359841
Alignment:
Q  410 atagacccactcattttcatgaaggtctattttagcaaggagcaccttttcact 463  Q
    ||||||||||||||||||||||||||||||||||||||  | ||||||||||||    
T  27359894 atagacccactcattttcatgaaggtctattttagcaaacaacaccttttcact 27359841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 410 - 465
Target Start/End: Original strand, 4300942 - 4300997
Alignment:
Q  410 atagacccactcattttcatgaaggtctattttagcaaggagcaccttttcacttg 465  Q
    ||||||||||| |||||||||||| |||||||||||||  | ||||||||||||||    
T  4300942 atagacccacttattttcatgaagatctattttagcaaccaacaccttttcacttg 4300997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 414 - 465
Target Start/End: Original strand, 17615035 - 17615086
Alignment:
Q  414 acccactcattttcatgaaggtctattttagcaaggagcaccttttcacttg 465  Q
    ||||||||||||| ||||||||||||||||||||   |||||||||||||||    
T  17615035 acccactcatttttatgaaggtctattttagcaacttgcaccttttcacttg 17615086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 410 - 461
Target Start/End: Complemental strand, 27317534 - 27317483
Alignment:
Q  410 atagacccactcattttcatgaaggtctattttagcaaggagcaccttttca 461  Q
    |||||||| ||||||||||||||||| |||||||||||| | ||||||||||    
T  27317534 atagacccgctcattttcatgaaggtttattttagcaagcaacaccttttca 27317483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 410 - 464
Target Start/End: Complemental strand, 28422904 - 28422850
Alignment:
Q  410 atagacccactcattttcatgaaggtctattttagcaaggagcaccttttcactt 464  Q
    ||||||||||||||||| ||||| ||||||||||||||  | |||||||||||||    
T  28422904 atagacccactcatttttatgaaagtctattttagcaaccatcaccttttcactt 28422850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 419 - 465
Target Start/End: Complemental strand, 33148348 - 33148303
Alignment:
Q  419 ctcattttcatgaaggtctattttagcaaggagcaccttttcacttg 465  Q
    |||||||| |||||||||||||||||||||| |||||||||||||||    
T  33148348 ctcatttt-atgaaggtctattttagcaaggtgcaccttttcacttg 33148303  T

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Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 410 - 447
Target Start/End: Complemental strand, 54285874 - 54285837
Alignment:
Q  410 atagacccactcattttcatgaaggtctattttagcaa 447  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  54285874 atagacccactcatttttatgaaggtctattttagcaa 54285837  T

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Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 410 - 461
Target Start/End: Complemental strand, 40929916 - 40929865
Alignment:
Q  410 atagacccactcattttcatgaaggtctattttagcaaggagcaccttttca 461  Q
    ||||||||||||||||| |||||||| |||||||||||  | ||||||||||    
T  40929916 atagacccactcatttttatgaaggtttattttagcaaccaacaccttttca 40929865  T

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Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 410 - 480
Target Start/End: Original strand, 51341883 - 51341954
Alignment:
Q  410 atagacccactcattttcatgaaggtctattttagcaaggagcaccttttcacttg-acaaaaatacccatg 480  Q
    ||||||| ||||||| |||||||||||||||||| |||  | |||||||| ||||| |||| ||||||||||    
T  51341883 atagacctactcattctcatgaaggtctattttaacaaccaacacctttttacttgaacaagaatacccatg 51341954  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 410 - 447
Target Start/End: Complemental strand, 29032863 - 29032826
Alignment:
Q  410 atagacccactcattttcatgaaggtctattttagcaa 447  Q
    ||||||||| ||||||| ||||||||||||||||||||    
T  29032863 atagacccattcatttttatgaaggtctattttagcaa 29032826  T

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Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 424 - 465
Target Start/End: Original strand, 33147355 - 33147396
Alignment:
Q  424 tttcatgaaggtctattttagcaaggagcaccttttcacttg 465  Q
    |||||||||| ||||||||||||||  |||||||||||||||    
T  33147355 tttcatgaagatctattttagcaagatgcaccttttcacttg 33147396  T

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Target: scaffold0676 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0676
Description:

Target: scaffold0676; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 410 - 459
Target Start/End: Original strand, 3171 - 3220
Alignment:
Q  410 atagacccactcattttcatgaaggtctattttagcaaggagcacctttt 459  Q
    |||||||| ||||||||||||||||||||||||||||||  |||||||||    
T  3171 atagacccgctcattttcatgaaggtctattttagcaagatgcacctttt 3220  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 410 - 461
Target Start/End: Original strand, 33471174 - 33471225
Alignment:
Q  410 atagacccactcattttcatgaaggtctattttagcaaggagcaccttttca 461  Q
    ||||||||| ||||||||||||||||||||||||||||  | ||||||||||    
T  33471174 atagacccattcattttcatgaaggtctattttagcaaccaacaccttttca 33471225  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 413 - 462
Target Start/End: Original strand, 22671618 - 22671667
Alignment:
Q  413 gacccactcattttcatgaaggtctattttagcaaggagcaccttttcac 462  Q
    ||||||||||||||||||||||||||||||| |||  | |||||||||||    
T  22671618 gacccactcattttcatgaaggtctattttaacaaccaacaccttttcac 22671667  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 410 - 459
Target Start/End: Original strand, 30667873 - 30667922
Alignment:
Q  410 atagacccactcattttcatgaaggtctattttagcaaggagcacctttt 459  Q
    ||||||||||   ||||||||||||| ||||||||||||| |||||||||    
T  30667873 atagacccaccttttttcatgaaggtatattttagcaaggtgcacctttt 30667922  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 410 - 461
Target Start/End: Complemental strand, 33471912 - 33471861
Alignment:
Q  410 atagacccact-cattttcatgaaggtctattttagcaaggagcaccttttca 461  Q
    ||||||||||| |||||| ||||||||||||||||||||  ||||||||||||    
T  33471912 atagacccacttcatttt-atgaaggtctattttagcaactagcaccttttca 33471861  T

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Target: scaffold0112 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 410 - 448
Target Start/End: Original strand, 24737 - 24775
Alignment:
Q  410 atagacccactcattttcatgaaggtctattttagcaag 448  Q
    |||||||||||||||||||||||| ||||||||| ||||    
T  24737 atagacccactcattttcatgaagttctattttaacaag 24775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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