View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15575_low_30 (Length: 253)
Name: NF15575_low_30
Description: NF15575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15575_low_30 |
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Alignment Details
Target: chr7 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 18 - 228
Target Start/End: Complemental strand, 8074933 - 8074723
Alignment:
| Q |
18 |
attatgggatttaattctacaaaatccgactcattccaagctattcaatgatgctatggaaagtgattctaatatggtgaggtttgcaatgagtgattgc |
117 |
Q |
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| T |
8074933 |
attatgggatttaattttacaaaatccgactcattccaagttattcaatgatgctatggaaagtgattctaatatggtgaggtttgcaatgagtgattgc |
8074834 |
T |
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| Q |
118 |
aaatcagtttttgagggcttaacttctttggttgatgttggaggtggaaccggaaacactgttaaaattatttgtgaggcgtttcctacgttaaaatgta |
217 |
Q |
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| T |
8074833 |
aaatcagtttttgagggcttaacttcgttggttgatgttggaggtggaaccggaaacactgttaaaattatttgtgaggcgtttcctacgttaaaatgta |
8074734 |
T |
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| Q |
218 |
tattcttcgac |
228 |
Q |
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| T |
8074733 |
tagtgttcgac |
8074723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 59 - 228
Target Start/End: Complemental strand, 8066457 - 8066288
Alignment:
| Q |
59 |
tattcaatgatgctatggaaagtgattctaatatggtgaggtttgcaatgagtgattgcaaatcagtttttgagggcttaacttctttggttgatgttgg |
158 |
Q |
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| T |
8066457 |
tattcaatgatgctatggagagtgactctaatatgatgaggtttgcaatgagtgattgcaaatcagtttttgagggcataacttctttggttgatgttgg |
8066358 |
T |
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| Q |
159 |
aggtggaaccggaaacactgttaaaattatttgtgaggcgtttcctacgttaaaatgtatattcttcgac |
228 |
Q |
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| T |
8066357 |
aggtggaaccggaaacacggttaaaattatttctgaggcgtttcctacgttaaaatgtatagtgttcgac |
8066288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 151 - 218
Target Start/End: Complemental strand, 4177512 - 4177445
Alignment:
| Q |
151 |
gatgttggaggtggaaccggaaacactgttaaaattatttgtgaggcgtttcctacgttaaaatgtat |
218 |
Q |
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| T |
4177512 |
gatgttggtggtggaaatggaaccactggtaaaattatttgtgagacttttcctaagttgaaatgtat |
4177445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 64 - 203
Target Start/End: Complemental strand, 34951456 - 34951317
Alignment:
| Q |
64 |
aatgatgctatggaaagtgattctaatatggtgaggtttgcaatgagtgattgcaaatcagtttttgagggcttaacttctttggttgatgttggaggtg |
163 |
Q |
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| T |
34951456 |
aatgatgctatggaaagtgattctcatgttgtgaggttggctttgagagattgtaattctgtttttgaagggattggttcattggttgatgttggtggtg |
34951357 |
T |
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| Q |
164 |
gaaccggaaacactgttaaaattatttgtgaggcgtttcc |
203 |
Q |
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| T |
34951356 |
gaactggaaacacagctaagattatttgtgaggcgtttcc |
34951317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 64 - 203
Target Start/End: Complemental strand, 34946985 - 34946846
Alignment:
| Q |
64 |
aatgatgctatggaaagtgattctaatatggtgaggtttgcaatgagtgattgcaaatcagtttttgagggcttaacttctttggttgatgttggaggtg |
163 |
Q |
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| T |
34946985 |
aatgatgctatggaaagtgattctcatgttgtgaggttggccttgagagattgtaagtctgtttttcaagggattggttcattggttgatgttggtggtg |
34946886 |
T |
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| Q |
164 |
gaaccggaaacactgttaaaattatttgtgaggcgtttcc |
203 |
Q |
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| T |
34946885 |
gaactggaaacacagctaagattatatgtgaggcgtttcc |
34946846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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