View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15575_low_31 (Length: 253)

Name: NF15575_low_31
Description: NF15575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15575_low_31
NF15575_low_31
[»] chr4 (3 HSPs)
chr4 (1-235)||(33485156-33485388)
chr4 (179-235)||(33498543-33498599)
chr4 (66-115)||(25525324-25525374)
[»] chr1 (2 HSPs)
chr1 (17-115)||(21629822-21629921)
chr1 (42-116)||(50414570-50414644)
[»] chr8 (1 HSPs)
chr8 (42-92)||(25273274-25273324)
[»] chr7 (1 HSPs)
chr7 (18-115)||(24978731-24978829)
[»] chr5 (1 HSPs)
chr5 (39-115)||(36017983-36018059)


Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 33485156 - 33485388
Alignment:
Q  1 ccttcgaggtttggccgtgaggtaagtataacttagacaaaaattgttccacccaggaatgaaaatcgggttttcccaaacaattcgtcatttgtggaac 100  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33485156 ccttcgaggtttggccgtgaggtaagtataacttagccaaaaattgttccacccaggaatgaaaatcgggttttcccaaacaattcgtcatttgtggaac 33485255  T
Q  101 tcattaatcacttgataattaaatatttatttttgtatttttgcacttgaggtaagtataacttatttccacctcaagactaatgaagatgtttaatttg 200  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33485256 tcattaatcacttgataattaaata-ttatttttgtatttttgcacttgaggtaagtataacttatttccacctcaagactaatgaagatgtttaatttg 33485354  T
Q  201 attttgatattttacaggctgataaatcaaccatt 235  Q
    | |||||||||||||||||||||||||||||||||    
T  33485355 a-tttgatattttacaggctgataaatcaaccatt 33485388  T

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Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 179 - 235
Target Start/End: Original strand, 33498543 - 33498599
Alignment:
Q  179 actaatgaagatgtttaatttgattttgatattttacaggctgataaatcaaccatt 235  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33498543 actaacgaagatgtttaatttgattttgatattttacaggctgataaatcaaccatt 33498599  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 115
Target Start/End: Original strand, 25525324 - 25525374
Alignment:
Q  66 tcgggttttcccaaacaattcgtcatttg-tggaactcattaatcacttga 115  Q
    ||||||||||||||||||| ||| ||||| | |||||||||||||||||||    
T  25525324 tcgggttttcccaaacaatacgttatttgatagaactcattaatcacttga 25525374  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 115
Target Start/End: Complemental strand, 21629921 - 21629822
Alignment:
Q  17 gtgaggtaagtataacttagacaaaaattgttccacccaggaatgaaaatcgggttttcccaaacaattcgtcattt-gtggaactcattaatcacttga 115  Q
    |||||||||||||| |||   |||||||||||||||| | |||| ||| ||||||| |||| ||   |||||| ||| |||||||||||||| |||||||    
T  21629921 gtgaggtaagtatagcttgaccaaaaattgttccacctatgaatcaaactcgggttatcccgaatgtttcgtcctttggtggaactcattaaccacttga 21629822  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 116
Target Start/End: Original strand, 50414570 - 50414644
Alignment:
Q  42 aattgttccacccaggaatgaaaatcgggttttcccaaacaattcgtcatttgtggaactcattaatcacttgat 116  Q
    |||||||||||||||||||  || ||||||| |||  ||||||||||| || ||||| |||||| | ||||||||    
T  50414570 aattgttccacccaggaattgaactcgggttctcctgaacaattcgtctttggtggagctcattgaccacttgat 50414644  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 92
Target Start/End: Original strand, 25273274 - 25273324
Alignment:
Q  42 aattgttccacccaggaatgaaaatcgggttttcccaaacaattcgtcatt 92  Q
    ||||||||||||||||||| ||| ||||||| || |||| |||||||||||    
T  25273274 aattgttccacccaggaatcaaactcgggttctctcaaataattcgtcatt 25273324  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 115
Target Start/End: Complemental strand, 24978829 - 24978731
Alignment:
Q  18 tgaggtaagtataacttagacaaaaattgttccacccaggaatgaaaatcgggttttcccaaacaattcgtcattt-gtggaactcattaatcacttga 115  Q
    |||||||||||||||   | ||| |||||||||||| ||||||  || ||  ||| |||||||||||| ||| ||| |||||||||||||| |||||||    
T  24978829 tgaggtaagtataacccggccaagaattgttccacctaggaatcgaactcacgttctcccaaacaatttgtcctttggtggaactcattaaccacttga 24978731  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 115
Target Start/End: Original strand, 36017983 - 36018059
Alignment:
Q  39 aaaaattgttccacccaggaatgaaaatcgggttttcccaaacaattcgtcatttgtggaactcattaatcacttga 115  Q
    ||||||||||||||||| ||||  || ||||||| |||| |||| |||||| || ||  |||||||||| |||||||    
T  36017983 aaaaattgttccacccaagaattgaactcgggttctccctaacatttcgtctttggtcaaactcattaaccacttga 36018059  T

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