View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15575_low_33 (Length: 246)
Name: NF15575_low_33
Description: NF15575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15575_low_33 |
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Alignment Details
Target: chr8 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 42936705 - 42936476
Alignment:
| Q |
1 |
atttgcaaaactaagattgctactgaattataactggnnnnnnnnnttaccccaatacgaaaatctctaaattgataaacaaactaaacccaaggcgtta |
100 |
Q |
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| T |
42936705 |
atttggaaaactaagattgctactgaattatcactggaaaaaaaaattactccaatacgaaaatctctaaattgataaacaaactaaacccaaggcgtta |
42936606 |
T |
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| Q |
101 |
atacttttattttggctctcagctccgctccttttatgtagaatgatagctttggaacaataaataagaggagtcaaaattaaaatcaggttcaatattt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42936605 |
atacttttattttggctctcagctccgctccttttatgtagaatgatagctttggaacaataaataagaggagtcaaaattaaaatcaggttcaatattt |
42936506 |
T |
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| Q |
201 |
tccggtctttgtattatagatatttgaaag |
230 |
Q |
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|||||||||||||||||| |||||||||| |
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| T |
42936505 |
tccggtctttgtattataactatttgaaag |
42936476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 47 - 110
Target Start/End: Complemental strand, 26084600 - 26084537
Alignment:
| Q |
47 |
ttaccccaatacgaaaatctctaaattgataaacaaactaaacccaaggcgttaatacttttat |
110 |
Q |
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| T |
26084600 |
ttaccccaatacgaaaatccctaaattgataaacaaactaaacccaaggcgttaatacttttat |
26084537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 9046198 - 9045978
Alignment:
| Q |
1 |
atttgcaaaactaagattgctactgaattataactggnnnnnnnnnttaccccaatacgaaaatctctaaattgataaacaaactaaacccaaggcgtta |
100 |
Q |
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||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||| |||| |
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| T |
9046198 |
atttgcaaaactaagattgctactgaattatcactggaaaaaaaa-ttaccccaatacgaaaatccctagattgataaacaaactaaacccaaggtgtta |
9046100 |
T |
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| Q |
101 |
atacttttattttggctctcagctccgctccttttatgtagaatgatagctttggaacaataaataagaggagtcaaaattaaaatcaggttcaatattt |
200 |
Q |
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||||||||||||||||||||||||| | ||||||||||||||||| || ||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
9046099 |
atacttttattttggctctcagctctgttccttttatgtagaatggta------gaacaataaataagaggagtc--aattaaaatcaggttcaatattt |
9046008 |
T |
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| Q |
201 |
tccggtctttgtattatagatatttgaaag |
230 |
Q |
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||| ||||||||||||| |||||||||| |
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| T |
9046007 |
tccagtctttgtattatttctatttgaaag |
9045978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 47 - 230
Target Start/End: Complemental strand, 21763176 - 21762993
Alignment:
| Q |
47 |
ttaccccaatacgaaaatctctaaattgataaacaaactaaacccaaggcgttaatacttttattttggctctcagctccgctccttttatgtagaatga |
146 |
Q |
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|||||| |||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||||||||||| |
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| T |
21763176 |
ttaccctaatatgaaaatccctaaattgataaacaaactaaacccaaggggttaatacttttattttggctctcagctctgctcctgttatgtagaatag |
21763077 |
T |
|
| Q |
147 |
tagctttggaacaataaataagaggagtcaaaattaaaatcaggttcaatattttccggtctttgtattatagatatttgaaag |
230 |
Q |
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||| ||||||||||||||||||||| ||||||||||| |||||| |||||||||| ||||||||||||| | |||||||||| |
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| T |
21763076 |
cagcgctggaacaataaataagaggaggcaaaattaaaaccaggttaaatattttccagtctttgtattattgctatttgaaag |
21762993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 115
Target Start/End: Original strand, 12806805 - 12806861
Alignment:
| Q |
59 |
gaaaatctctaaattgataaacaaactaaacccaaggcgttaatacttttattttgg |
115 |
Q |
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||||||| ||| ||||||||||||||||||||||||| ||| ||| |||||||||| |
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| T |
12806805 |
gaaaatccctagattgataaacaaactaaacccaaggggttgttacctttattttgg |
12806861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 115
Target Start/End: Original strand, 14444429 - 14444485
Alignment:
| Q |
59 |
gaaaatctctaaattgataaacaaactaaacccaaggcgttaatacttttattttgg |
115 |
Q |
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||||||| ||| ||||||||||||||||||||||||| ||| ||| |||||||||| |
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| T |
14444429 |
gaaaatccctagattgataaacaaactaaacccaaggggttgttacctttattttgg |
14444485 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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