View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15575_low_36 (Length: 243)
Name: NF15575_low_36
Description: NF15575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15575_low_36 |
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Alignment Details
Target: chr6 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 11 - 241
Target Start/End: Original strand, 21378212 - 21378442
Alignment:
| Q |
11 |
cattaaagcacaaaatcaacatctcaataagcttaaagtgaaaacaagaaaagcaattatttttatttattacaccgatcgattggaagaaaattttcct |
110 |
Q |
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| T |
21378212 |
cattaaagcacaaaatcaacatctcaataagcttaaagtgaaaacaagaaaagcaattatttttatttattacaccgatcgattggaagaaaattttcct |
21378311 |
T |
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| Q |
111 |
tgcaaactagcatattaaaactatagtccccttctttagcaccaaaatcttcaatcatatgtgtagttaagtcaatccaagctaattctttatctatcct |
210 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21378312 |
tgcaaactagcatattaaaactacagtccccttctttagcaccaaaatcttcaatcatatgtgtagttaagtcaatccaagctaattctttatctatcct |
21378411 |
T |
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| Q |
211 |
tttgaaaagtaattttccctttgctactcca |
241 |
Q |
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|||||||| ||||||||||||||| |||||| |
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| T |
21378412 |
tttgaaaaataattttccctttgccactcca |
21378442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 39 - 241
Target Start/End: Original strand, 21374151 - 21374351
Alignment:
| Q |
39 |
aagcttaaagtgaaaacaagaaaagcaattatttttatttattacaccgatcgattggaagaaaattttccttgcaaactagcatattaaaactatagtc |
138 |
Q |
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|||||||||||||||||||||||||||| | ||||||| |||||||||||||||||| |||||||||||||| |||||||||||||| ||||| |||| |
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| T |
21374151 |
aagcttaaagtgaaaacaagaaaagcaaat---tttatttgttacaccgatcgattggatgaaaattttccttgtaaactagcatattataactacagtc |
21374247 |
T |
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| Q |
139 |
cccttctttagcaccaaaatcttcaatcatatgtgtagttaagtcaatccaagctaattc-tttatctatccttttgaaaagtaattttccctttgctac |
237 |
Q |
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|||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| || |
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| T |
21374248 |
cccttcttcagcaccaaaatcttcaattatatgtgtagttaagtcaatccaagctaattcatttatctatccttttgaaaaataattttccctttgccac |
21374347 |
T |
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| Q |
238 |
tcca |
241 |
Q |
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|||| |
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| T |
21374348 |
tcca |
21374351 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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