View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15575_low_38 (Length: 242)
Name: NF15575_low_38
Description: NF15575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15575_low_38 |
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Alignment Details
Target: chr1 (Bit Score: 57; Significance: 6e-24; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 84 - 216
Target Start/End: Complemental strand, 13150743 - 13150611
Alignment:
| Q |
84 |
gctattttcgtgttaattgaagtgtttcccgttgaacaaaaacaattatttgctcctattttatgaagcctttggaaaccccagaatttaaaggtatggg |
183 |
Q |
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| T |
13150743 |
gctattttcgcgttgattgaaacgttacccgttgaaaagaaacaattattttctcctactttgtggagcctttggaaacaccagaacttaaagggatgcg |
13150644 |
T |
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| Q |
184 |
aggacatgacagaagttgttgctgttgttgttg |
216 |
Q |
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| T |
13150643 |
aggacttgacaaaagatgttgttgttgttgttg |
13150611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 84 - 216
Target Start/End: Complemental strand, 13166847 - 13166715
Alignment:
| Q |
84 |
gctattttcgtgttaattgaagtgtttcccgttgaacaaaaacaattatttgctcctattttatgaagcctttggaaaccccagaatttaaaggtatggg |
183 |
Q |
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| T |
13166847 |
gctattttcgcgttgattgaaacgttacccgttgaaaagaaacaattattttctcctattttgtggagcctttggaaacaccagaacttaaagggatgtg |
13166748 |
T |
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| Q |
184 |
aggacatgacagaagttgttgctgttgttgttg |
216 |
Q |
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| T |
13166747 |
aggacttgacaaaagttgttattgttgtggttg |
13166715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 84 - 209
Target Start/End: Complemental strand, 13178988 - 13178863
Alignment:
| Q |
84 |
gctattttcgtgttaattgaagtgtttcccgttgaacaaaaacaattatttgctcctattttatgaagcctttggaaaccccagaatttaaaggtatggg |
183 |
Q |
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| T |
13178988 |
gctattttcgcgttgattgaaacgttacccgctgaaaagaaacaattattttctccgattttatggagcctttggaaacaccataacttaaagggatgtg |
13178889 |
T |
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| Q |
184 |
aggacatgacagaagttgttgctgtt |
209 |
Q |
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| T |
13178888 |
aggacttgacaaaagttgttgttgtt |
13178863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 61
Target Start/End: Complemental strand, 13166924 - 13166879
Alignment:
| Q |
16 |
ctatccaagtatggcgcttgtcgggacttttgtctcaaattcatca |
61 |
Q |
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| T |
13166924 |
ctatccaagtatggcggttgtctgggctttagtctcaaattcatca |
13166879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 30677883 - 30677833
Alignment:
| Q |
1 |
ttacttgtccgtttgctatccaagtatggcgcttgtcgggacttttgtctc |
51 |
Q |
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| T |
30677883 |
ttacttgtccgtttgctatccaagtatggcgcttgtcgggactttggtctc |
30677833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 4 - 62
Target Start/End: Original strand, 6339537 - 6339595
Alignment:
| Q |
4 |
cttgtccgtttgctatccaagtatggcgcttgtcgggacttttgtctcaaattcatcat |
62 |
Q |
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| T |
6339537 |
cttgtccttttgctatcctagtatggcgtttgtcggggctttggtcccaaattcatcat |
6339595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 223
Target Start/End: Original strand, 33213052 - 33213125
Alignment:
| Q |
150 |
agcctttggaaaccccagaatttaaaggtatgggaggacatgacagaagttgttgctgttgttgttgatcgtgc |
223 |
Q |
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| T |
33213052 |
agcctttggaaacaccggaacttaaaggtttgggaggatgtaacggaagttgctgcagttgttgttgaccgtgc |
33213125 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 50
Target Start/End: Original strand, 28416856 - 28416900
Alignment:
| Q |
6 |
tgtccgtttgctatccaagtatggcgcttgtcgggacttttgtct |
50 |
Q |
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| T |
28416856 |
tgtccgtttgctatacaagtatggcgtttgtcggggctttggtct |
28416900 |
T |
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