View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15575_low_41 (Length: 237)
Name: NF15575_low_41
Description: NF15575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15575_low_41 |
 | |
|
| [»] chr6 (7 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 200; Significance: 1e-109; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 18 - 237
Target Start/End: Original strand, 10982462 - 10982681
Alignment:
| Q |
18 |
acaaggtgcgatattaaagcatgactcgattggtggattcgtgacacattgtggatggaactcggtgttggaagctgtatgtgaaggagtgcctatggtg |
117 |
Q |
| |
|
||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10982462 |
acaaggtgcaatattaaagcatgactcgatcggtggattcgtgacacattgtggatggaactcggtgttggaagctgtatgtgaaggagtgcctatggtg |
10982561 |
T |
|
| Q |
118 |
gcatggccattgtatggagaacaaaggttgaacaaggtgattttggttgaggagatgaaggttgctttggaactgaaggattcaaaagacgggtttgtga |
217 |
Q |
| |
|
|||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
10982562 |
gcatggccattgtatgcagaacaaaggctgaacaaggtgattttggttgaggagatgaaggttgctttggaattgaaggattcaaaagacgggtttgtga |
10982661 |
T |
|
| Q |
218 |
gtggaaccgagttaggggat |
237 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
10982662 |
gtggaaccgagttaggggat |
10982681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 18 - 237
Target Start/End: Original strand, 10968512 - 10968731
Alignment:
| Q |
18 |
acaaggtgcgatattaaagcatgactcgattggtggattcgtgacacattgtggatggaactcggtgttggaagctgtatgtgaaggagtgcctatggtg |
117 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |
|
|
| T |
10968512 |
acaaggtgcaatattaaagcatgactcgattggtggattcgtgacacattgtggatggaactcggtgttggaagctatttgtgaaggagtgcctatggtg |
10968611 |
T |
|
| Q |
118 |
gcatggccattgtatggagaacaaaggttgaacaaggtgattttggttgaggagatgaaggttgctttggaactgaaggattcaaaagacgggtttgtga |
217 |
Q |
| |
|
|| |||||||| |||| |||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10968612 |
gcgtggccattatatgcagaacaaaggctgaacaaggtgattttggttgacgagatgaaggttgctttggaactgaaggattcaaaagacgggtttgtga |
10968711 |
T |
|
| Q |
218 |
gtggaaccgagttaggggat |
237 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
10968712 |
gtggaaccgagttaggggat |
10968731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 47 - 236
Target Start/End: Original strand, 11002721 - 11002910
Alignment:
| Q |
47 |
ttggtggattcgtgacacattgtggatggaactcggtgttggaagctgtatgtgaaggagtgcctatggtggcatggccattgtatggagaacaaaggtt |
146 |
Q |
| |
|
|||||||||||||||| || |||||||||||||| |||||||||||| | |||||||||||||||||| | |||||||| ||||||| |||||||||||| |
|
|
| T |
11002721 |
ttggtggattcgtgactcactgtggatggaactcagtgttggaagctatttgtgaaggagtgcctatgattgcatggcctttgtatgcagaacaaaggtt |
11002820 |
T |
|
| Q |
147 |
gaacaaggtgattttggttgaggagatgaaggttgctttggaactgaaggattcaaaagacgggtttgtgagtggaaccgagttagggga |
236 |
Q |
| |
|
|||||| |||||||||||||||| |||||||| ||||||||||| || | |||||| | |||||||||||||||| ||||| ||||| |
|
|
| T |
11002821 |
gaacaaaatgattttggttgaggaaatgaaggtggctttggaactaaatgggtcaaaaaaagggtttgtgagtggaaatgagttggggga |
11002910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 49 - 144
Target Start/End: Original strand, 11019104 - 11019199
Alignment:
| Q |
49 |
ggtggattcgtgacacattgtggatggaactcggtgttggaagctgtatgtgaaggagtgcctatggtggcatggccattgtatggagaacaaagg |
144 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||| |||||||||||| | |||||||| ||||| ||| | |||||||| |||| | |||||||||| |
|
|
| T |
11019104 |
ggtggatttgtgactcattgtggatggaactccgtgttggaagctatttgtgaaggggtgccaatgattgcatggcctttgttcgcagaacaaagg |
11019199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 64 - 144
Target Start/End: Original strand, 11050235 - 11050315
Alignment:
| Q |
64 |
cattgtggatggaactcggtgttggaagctgtatgtgaaggagtgcctatggtggcatggccattgtatggagaacaaagg |
144 |
Q |
| |
|
||||||||||||||||| |||||||||||| | | |||||| ||||| ||| | |||||||| |||| || |||||||||| |
|
|
| T |
11050235 |
cattgtggatggaactccgtgttggaagctatttatgaaggggtgccaatgattgcatggcctttgtttgcagaacaaagg |
11050315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 47 - 107
Target Start/End: Original strand, 11079862 - 11079922
Alignment:
| Q |
47 |
ttggtggattcgtgacacattgtggatggaactcggtgttggaagctgtatgtgaaggagt |
107 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||| |||||||||||| | || |||||||| |
|
|
| T |
11079862 |
ttggtgggttcgtgactcattgtggatggaactccgtgttggaagctatttgcgaaggagt |
11079922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 80
Target Start/End: Complemental strand, 4493290 - 4493253
Alignment:
| Q |
43 |
tcgattggtggattcgtgacacattgtggatggaactc |
80 |
Q |
| |
|
||||||||||||||| |||| ||||||||||||||||| |
|
|
| T |
4493290 |
tcgattggtggattcttgactcattgtggatggaactc |
4493253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 91
Target Start/End: Complemental strand, 23628149 - 23628117
Alignment:
| Q |
59 |
tgacacattgtggatggaactcggtgttggaag |
91 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |
|
|
| T |
23628149 |
tgactcattgtggatggaactcggtgttggaag |
23628117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University