View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15575_low_48 (Length: 205)
Name: NF15575_low_48
Description: NF15575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15575_low_48 |
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| [»] scaffold0121 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 154; Significance: 7e-82; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 16 - 185
Target Start/End: Original strand, 49063405 - 49063574
Alignment:
| Q |
16 |
aatatacacacaaaatgtggctatataaaatgacccctacacacccaacctcaatgtgttatttcttactctaaaattaaaatcacaaacacacccaccc |
115 |
Q |
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| T |
49063405 |
aatatacacacaaaatgtggctatataaaatgacccctacacacccaacttcaatgtgttatttcttactctaaaattaaaatcacaaacacacccacca |
49063504 |
T |
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| Q |
116 |
accaacctttccttttctatttctctttgtttgtgcttcagccatgtcgagtgcaaagaaaggccgaggc |
185 |
Q |
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| T |
49063505 |
accaacctttccttttctatttctctttgtttgtgcttcagccatgtcgagtgtaaggaaaggccgaggc |
49063574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 19 - 184
Target Start/End: Original strand, 49048362 - 49048521
Alignment:
| Q |
19 |
atacacacaaaatgtggctatataaaatgacccctacacacccaacctcaatgtgttatttcttactctaaaattaaaatcacaaacacacccacccacc |
118 |
Q |
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| T |
49048362 |
atacacacaaaaattgactatataaaaagacccctccacacccaattttaatgtgtcatttcttactctaaaataacaaacacacaatcacccac----- |
49048456 |
T |
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| Q |
119 |
aacctttccttttctat-ttctctttgtttgtgcttcagccatgtcgagtgcaaagaaaggccgagg |
184 |
Q |
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| T |
49048457 |
--ctttttcttttctttgttctctctgtttgtgtgtcagccatgtcgagtggaaagaaaggccgagg |
49048521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 3e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 39 - 184
Target Start/End: Original strand, 39705543 - 39705680
Alignment:
| Q |
39 |
tataaaatgacccctacacacccaacctcaatgtgttatttcttactctaaaattaaaatcacaaacacacccacccaccaacctttccttttctat-tt |
137 |
Q |
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| T |
39705543 |
tataaaatgacccgttcacacccaacttcaatgtgtcatttcttactcttaaat------cacaaacacacaca---aacatcctttgcttttctttgtt |
39705633 |
T |
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| Q |
138 |
ctctttgtttgtgcttcagccatgtcgagtgcaaagaaaggccgagg |
184 |
Q |
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| T |
39705634 |
atctttgtttgtgcttcagccatgtcgagcgcaaagaaaggccgagg |
39705680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0121 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: scaffold0121
Description:
Target: scaffold0121; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 38 - 181
Target Start/End: Original strand, 38732 - 38868
Alignment:
| Q |
38 |
atataaaatgacccctacacacccaacctcaatgtgttatttcttactctaaaattaaaatcacaaacacacccacccaccaacctttccttttctattt |
137 |
Q |
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| T |
38732 |
atataaaatgaccccttcacacccaacttcaatgggccatttcttactctaaa--taaaaa-acacatacacccacccacc---ctttgcttttttgtt- |
38824 |
T |
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| Q |
138 |
ctctttgtttgtgcttcagccatgtcgagtgcaaagaaaggccg |
181 |
Q |
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| T |
38825 |
ctctttgtttgtgctttagccatgtcgagcggaaagaaaggccg |
38868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 19 - 184
Target Start/End: Complemental strand, 9758066 - 9757912
Alignment:
| Q |
19 |
atacacacaaaatgtggctatataaaatgacccctacacacccaacctcaatgtgttatttcttactctaaaattaaaatcacaaacacacccacccacc |
118 |
Q |
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| T |
9758066 |
atacatacaaaat-tgactatataaaatgaccccttcacacccaacttcaatgtctcatttcttactc------taagataacaaacacactcacccac- |
9757975 |
T |
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| Q |
119 |
aacctttccttttctatttctctttgtttgtgcttcagccatgtcgagtgcaaagaaaggccgagg |
184 |
Q |
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| T |
9757974 |
--ccttttcttttct-ttgttctctctttgtgtgtcagccatgtcgagtggaaagaaaggccgagg |
9757912 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 92
Target Start/End: Original strand, 22651769 - 22651842
Alignment:
| Q |
19 |
atacacacaaaatgtggctatataaaatgacccctacacacccaacctcaatgtgttatttcttactctaaaat |
92 |
Q |
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| T |
22651769 |
atacacacaaaaattgactatacaaaatcaccccttcacacccaatttcaatgtgtcattttgtactctaaaat |
22651842 |
T |
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