View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15575_low_6 (Length: 462)
Name: NF15575_low_6
Description: NF15575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15575_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 15 - 445
Target Start/End: Complemental strand, 35723474 - 35723039
Alignment:
| Q |
15 |
aagaagtgtggtcaacaacataacctattttcctaaaaataaaaataccctattaatattaataagaaaggcgccaaacaaattgcgtcaacctctataa |
114 |
Q |
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| T |
35723474 |
aagaagtgtggtcaacaacataacctattttcctaaaaataaaaataccctattaatattaataagaaaggcgccaaacaaattgcgtcaacctctataa |
35723375 |
T |
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| Q |
115 |
atttattttgttccaattgctttgctccatttatgaagaaaatagatacattaaatagattagtattttagtggattccaattggctatcatgtgtgtct |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35723374 |
atttattttgttccaattgctttgctccatttatgaagaaaatagatacattaaatagattagtattttagtggattccaattggctatcatgtgtgtct |
35723275 |
T |
|
| Q |
215 |
atctattttataaatggacaataaataaagcaaaacaaatggaacaagcttttgtcaac---nnnnnnnnntggaacaagctgaactc--tagtattttt |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |
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| T |
35723274 |
atctattttataaatggacaataaataaagcaaaacaaatggaacaagcttttgtcaacaaaaaaaaaaaatggaacaagctgaactctatagtattttt |
35723175 |
T |
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| Q |
310 |
taccatgaactgcaatgaaactaaaactagagacattgagaaaacacatagagcttgtcataaaaagttatgaaaaattgattgtgatggtcgaattagt |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35723174 |
taccatgaactgcaatgaaactaaaactagagacattgagaaaacacatagagcttgtcataaaaagttatgaaaaattgattgtgatggtcgaattagt |
35723075 |
T |
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| Q |
410 |
taaccagcctattgaaattagcgattgcctattaat |
445 |
Q |
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||| |||||||||||||||||||||||||||||||| |
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| T |
35723074 |
taatcagcctattgaaattagcgattgcctattaat |
35723039 |
T |
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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 212 - 255
Target Start/End: Complemental strand, 44534452 - 44534409
Alignment:
| Q |
212 |
tctatctattttataaatggacaataaataaagcaaaacaaatg |
255 |
Q |
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||||||| ||||||||||||||||||||||||| |||| ||||| |
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| T |
44534452 |
tctatctcttttataaatggacaataaataaagtaaaataaatg |
44534409 |
T |
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