View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15575_low_7 (Length: 451)
Name: NF15575_low_7
Description: NF15575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15575_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 282; Significance: 1e-158; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 15812103 - 15811803
Alignment:
| Q |
1 |
tcgtattttgttcagagttaagtagaatcagaagtcactaaaatcctatggaattaacatgaacgcataaaggaagcgattcaattcacttcatgtatat |
100 |
Q |
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| T |
15812103 |
tcgtagtttgttcagagttaagtagaatcagaagtcactaaaatcctatggaattaacatgaacgcataaaggaagcgattcaattcacttcatgtatat |
15812004 |
T |
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| Q |
101 |
caaatatatcaatatcaacaaaacctataatcctcatagtccttacaagcaacaagtaaaccaaaatattaacgaataaagttttgaacaatctcatttc |
200 |
Q |
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| T |
15812003 |
caaatatatcaatatcaacaaaacctataatcctcatagtccttacaagcaacaagtaaaccaaaatattaacgaataaagttttgaacaatctcatttc |
15811904 |
T |
|
| Q |
201 |
tcctgattgagaggtgtattacaatagtagttctgcataaggaaagaaacaaacac--tgtttttcaatcagatgctataaatcaaaaccacatggtatt |
298 |
Q |
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| T |
15811903 |
tcctgattgagaggtgtattacaatagtagttctgcataaggaaagaaacaaacactgtgtttttcaatcagatgctataaatcaaaaccgcatggtatt |
15811804 |
T |
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| Q |
299 |
a |
299 |
Q |
| |
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| |
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| T |
15811803 |
a |
15811803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 381 - 441
Target Start/End: Complemental strand, 15811740 - 15811680
Alignment:
| Q |
381 |
gttatcttaaatcttaaagaaaacacagaagaaagcacctggttaaaccacgacatctgtg |
441 |
Q |
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| T |
15811740 |
gttatcttaaatcttaaagaaaacacagaagaaagcacctggttaaaccacgacatctgtg |
15811680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 107 - 227
Target Start/End: Complemental strand, 15798501 - 15798380
Alignment:
| Q |
107 |
tatcaatatcaacaaaacctataatcctcatagtccttacaagcaacaagtaaaccaaaatattaacgaataaagttttg-aacaatctcatttctcctg |
205 |
Q |
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|||||||||||||||| ||| ||||| ||||| ||||| ||| ||||||||||||||||||||||||||||||||||| | ||||| |||||||||| | |
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| T |
15798501 |
tatcaatatcaacaaagcctctaatcttcatactccttccaatcaacaagtaaaccaaaatattaacgaataaagtttcgaaacaacctcatttctctta |
15798402 |
T |
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| Q |
206 |
attgagaggtgtattacaatag |
227 |
Q |
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|||| ||||||||| ||||| |
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| T |
15798401 |
tttgatgggtgtattaaaatag |
15798380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 163 - 202
Target Start/End: Complemental strand, 15804073 - 15804033
Alignment:
| Q |
163 |
aaaatattaacgaataaagttttgaa-caatctcatttctc |
202 |
Q |
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| T |
15804073 |
aaaatattaacgaataaagttttgaagcaatctcatttctc |
15804033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 98
Target Start/End: Complemental strand, 15804171 - 15804126
Alignment:
| Q |
54 |
ttaacatg-aacgcataaaggaagcgattcaattcacttcatgtat |
98 |
Q |
| |
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|||||||| ||| |||||||||||||||||||||| |||||||||| |
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|
| T |
15804171 |
ttaacatgtaacacataaaggaagcgattcaattcgcttcatgtat |
15804126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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