View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15575_low_8 (Length: 444)

Name: NF15575_low_8
Description: NF15575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15575_low_8
NF15575_low_8
[»] chr4 (2 HSPs)
chr4 (13-426)||(48656175-48656587)
chr4 (270-378)||(38075437-38075545)
[»] scaffold0209 (1 HSPs)
scaffold0209 (314-398)||(12557-12639)
[»] chr8 (4 HSPs)
chr8 (314-398)||(583797-583879)
chr8 (270-378)||(3418512-3418620)
chr8 (270-378)||(10927609-10927717)
chr8 (316-380)||(18374011-18374075)
[»] chr3 (3 HSPs)
chr3 (270-378)||(54261225-54261333)
chr3 (269-354)||(45450446-45450531)
chr3 (306-378)||(11687145-11687217)
[»] chr2 (8 HSPs)
chr2 (19-95)||(35943165-35943241)
chr2 (270-378)||(41220634-41220742)
chr2 (271-338)||(2784971-2785038)
chr2 (270-399)||(14169608-14169737)
chr2 (316-398)||(41187828-41187910)
chr2 (325-398)||(42770705-42770778)
chr2 (270-378)||(7747273-7747381)
chr2 (270-338)||(12864263-12864331)
[»] chr5 (4 HSPs)
chr5 (270-424)||(42086282-42086435)
chr5 (270-378)||(5731919-5732027)
chr5 (325-378)||(12766131-12766184)
chr5 (270-378)||(8513519-8513627)
[»] chr6 (5 HSPs)
chr6 (270-378)||(21898651-21898759)
chr6 (65-97)||(8474926-8474958)
chr6 (270-398)||(13036003-13036131)
chr6 (270-338)||(31129220-31129288)
chr6 (348-388)||(32150189-32150229)
[»] chr1 (2 HSPs)
chr1 (270-398)||(5855502-5855630)
chr1 (270-387)||(10422779-10422896)
[»] chr7 (3 HSPs)
chr7 (316-383)||(365137-365204)
chr7 (325-378)||(29151942-29151995)
chr7 (269-338)||(29805438-29805507)


Alignment Details
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 13 - 426
Target Start/End: Complemental strand, 48656587 - 48656175
Alignment:
Q  13 aaaattgaggaatgttattataacaacaaaaatttgacaactttataagaacacactatttataactattgatttgactcgagaagataaaaaagaaact 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||    
T  48656587 aaaattgaggaatgttattataacaacaaaaatttgacaactttataagaacatactatttataactattgatttgactcgcgaagataaaaaagaaact 48656488  T
Q  113 cataataaagtgaactatatacattacataaatacgttggtgcatgaacaactaaataattgtgcaactaacatttctaacaaaattgcactcgttgtgt 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  48656487 cataataaagtgaactatatacattacataaatacgttggtgcatgaacaactaaataattgtccaactaacatttctaacaaaattgcactcgttgtgt 48656388  T
Q  213 aaattcttccccatttaattctcaataaaatattgggtacgtattcnnnnnnnnnctctttcgcaccggtttccgactcgttaatggtagacaactaatt 312  Q
    ||||||||| ||||||||||||||||||||||||| ||||||||||         |||||||||| |||||| |||  | | ||||||  |||||||||     
T  48656387 aaattcttctccatttaattctcaataaaatattgagtacgtattc-ttttttctctctttcgcatcggttttcgatccatcaatggtgaacaactaatc 48656289  T
Q  313 tgactcatgcagagaggcatgcgcacaggttaagcattgttcttcctaagaatcgaacccggtatttctcgaatatgtacttggaaaagagcgtcttgcg 412  Q
       |||||||||||||||||| |||||||| |||| |||||||||||  |||| || |||| |||||||||  || || |||||||| |||||||||||     
T  48656288 cagctcatgcagagaggcatgtgcacaggtcaagcgttgttcttcctgggaattgagcccgatatttctcgggtacgtccttggaaaggagcgtcttgcc 48656189  T
Q  413 accggagcccaaat 426  Q
    || |||||||||||    
T  48656188 actggagcccaaat 48656175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 270 - 378
Target Start/End: Complemental strand, 38075545 - 38075437
Alignment:
Q  270 ctttcgcaccggtttccgactcgttaatggtagacaactaatttgactcatgcagagaggcatgcgcacaggttaagcattgttcttcctaagaatcgaa 369  Q
    |||||||| ||||||||||| |   || ||| ||||| ||||| | |||||||  |||||||||||||| ||  |||| |||||   ||| |||||||||    
T  38075545 ctttcgcatcggtttccgacccaccaaaggtggacaattaattcggctcatgcgtagaggcatgcgcactggccaagcgttgtttcccctgagaatcgaa 38075446  T
Q  370 cccggtatt 378  Q
    |||||||||    
T  38075445 cccggtatt 38075437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0209 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 314 - 398
Target Start/End: Complemental strand, 12639 - 12557
Alignment:
Q  314 gactcatgcagagaggcatgcgcacaggttaagcattgttcttcctaagaatcgaacccggtatttctcgaatatgtacttggaa 398  Q
    |||||||||  |||||||||||||| ||| |||| ||||||  |||| ||||||||||||||||||||||| || || |||||||    
T  12639 gactcatgcgtagaggcatgcgcactggtcaagcgttgttc--cctaggaatcgaacccggtatttctcgagtacgtccttggaa 12557  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 314 - 398
Target Start/End: Complemental strand, 583879 - 583797
Alignment:
Q  314 gactcatgcagagaggcatgcgcacaggttaagcattgttcttcctaagaatcgaacccggtatttctcgaatatgtacttggaa 398  Q
    |||||||||  |||||||||||||| ||| |||| ||||||  |||| ||||||||||||||||||||||| || || |||||||    
T  583879 gactcatgcgtagaggcatgcgcactggtcaagcgttgttc--cctaggaatcgaacccggtatttctcgagtacgtccttggaa 583797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 270 - 378
Target Start/End: Original strand, 3418512 - 3418620
Alignment:
Q  270 ctttcgcaccggtttccgactcgttaatggtagacaactaatttgactcatgcagagaggcatgcgcacaggttaagcattgttcttcctaagaatcgaa 369  Q
    |||||||||||||||| ||| |  ||| ||| ||| |||||| ||||||||||  ||| |||||||||| ||  |||  |||||| |||||| |||||||    
T  3418512 ctttcgcaccggtttctgacccactaaaggtggacgactaatctgactcatgcgtagacgcatgcgcactggccaagtgttgttcctcctaaaaatcgaa 3418611  T
Q  370 cccggtatt 378  Q
    |||| ||||    
T  3418612 cccgatatt 3418620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 270 - 378
Target Start/End: Complemental strand, 10927717 - 10927609
Alignment:
Q  270 ctttcgcaccggtttccgactcgttaatggtagacaactaatttgactcatgcagagaggcatgcgcacaggttaagcattgttcttcctaagaatcgaa 369  Q
    |||||||| ||||||||||| |  ||| |||  || ||||||  | |||||||  |||||||||||||| ||  |||| |||||| ||||| ||||||||    
T  10927717 ctttcgcatcggtttccgacccactaaaggtgaacgactaatccggctcatgcgtagaggcatgcgcactggccaagcgttgttcctcctaggaatcgaa 10927618  T
Q  370 cccggtatt 378  Q
    |||||||||    
T  10927617 cccggtatt 10927609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 316 - 380
Target Start/End: Complemental strand, 18374075 - 18374011
Alignment:
Q  316 ctcatgcagagaggcatgcgcacaggttaagcattgttcttcctaagaatcgaacccggtatttc 380  Q
    |||||||  |||||||||||||| ||| |||| ||||||| ||| ||||||||||| ||||||||    
T  18374075 ctcatgcgtagaggcatgcgcactggtcaagcgttgttctccctgagaatcgaacctggtatttc 18374011  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 270 - 378
Target Start/End: Complemental strand, 54261333 - 54261225
Alignment:
Q  270 ctttcgcaccggtttccgactcgttaatggtagacaactaatttgactcatgcagagaggcatgcgcacaggttaagcattgttcttcctaagaatcgaa 369  Q
    |||||||||||||||||||| |  ||| |||  || ||||||  | |||||||  |||||||||||||| ||  |||| |||||| ||||| ||||||||    
T  54261333 ctttcgcaccggtttccgacccactaaaggtgaacgactaatccggctcatgcgtagaggcatgcgcactggccaagcgttgttcctcctaggaatcgaa 54261234  T
Q  370 cccggtatt 378  Q
    |||||||||    
T  54261233 cccggtatt 54261225  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 269 - 354
Target Start/End: Original strand, 45450446 - 45450531
Alignment:
Q  269 tctttcgcaccggtttccgactcgttaatggtagacaactaatttgactcatgcagagaggcatgcgcacaggttaagcattgttc 354  Q
    |||||||||||||||||| |||| | || ||| ||| |||||| |  || ||||  |||||||||||||| ||| |||||||||||    
T  45450446 tctttcgcaccggtttccaactcatcaaaggtggacgactaatctagcttatgcgtagaggcatgcgcactggtcaagcattgttc 45450531  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 306 - 378
Target Start/End: Original strand, 11687145 - 11687217
Alignment:
Q  306 actaatttgactcatgcagagaggcatgcgcacaggttaagcattgttcttcctaagaatcgaacccggtatt 378  Q
    |||||| |||||||| |  |||||||||||||| ||  |||||||||||  ||| |||||| |||||||||||    
T  11687145 actaatctgactcatacgtagaggcatgcgcactggccaagcattgttccccctgagaatcaaacccggtatt 11687217  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 95
Target Start/End: Complemental strand, 35943241 - 35943165
Alignment:
Q  19 gaggaatgttattataacaacaaaaatttgacaactttataagaacacactatttataactattgatttgactcgag 95  Q
    ||||||||||| || |||||| |||||||||||||  ||| | || |||| ||||||||||||||||||| ||||||    
T  35943241 gaggaatgttactagaacaaccaaaatttgacaaccgtattaaaatacacaatttataactattgatttggctcgag 35943165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 270 - 378
Target Start/End: Complemental strand, 41220742 - 41220634
Alignment:
Q  270 ctttcgcaccggtttccgactcgttaatggtagacaactaatttgactcatgcagagaggcatgcgcacaggttaagcattgttcttcctaagaatcgaa 369  Q
    |||||||||||||||||||| |  ||| |||  || ||||||| | |||||||  |||||||||||||| ||  |||| |||||| ||||  ||||||||    
T  41220742 ctttcgcaccggtttccgacccactaaaggtgaacgactaattcggctcatgcgtagaggcatgcgcactggccaagcgttgttcctcctgggaatcgaa 41220643  T
Q  370 cccggtatt 378  Q
    |||||||||    
T  41220642 cccggtatt 41220634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 271 - 338
Target Start/End: Complemental strand, 2785038 - 2784971
Alignment:
Q  271 tttcgcaccggtttccgactcgttaatggtagacaactaatttgactcatgcagagaggcatgcgcac 338  Q
    ||||||||||||||||||||| | |||| | ||| |||||| ||||||||||  ||||||||||||||    
T  2785038 tttcgcaccggtttccgactcatcaatgatggacgactaatctgactcatgcgtagaggcatgcgcac 2784971  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 270 - 399
Target Start/End: Original strand, 14169608 - 14169737
Alignment:
Q  270 ctttcgcaccggtttccgactcgttaatggtagacaactaatttgactcatgcagagaggcatgcgcacaggttaagcattgttcttcctaagaatcgaa 369  Q
    |||||||||||||||||||| |   |||||||||| ||||||  | |||||||  |||| ||||||||| ||| |||  ||||||  ||  |||||||||    
T  14169608 ctttcgcaccggtttccgacccaccaatggtagacgactaatccggctcatgcgtagagacatgcgcactggtcaagtgttgttcccccggagaatcgaa 14169707  T
Q  370 cccggtatttctcgaatatgtacttggaaa 399  Q
    |||| |||| | |||||| || ||||||||    
T  14169708 cccgatattccccgaatacgtccttggaaa 14169737  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 316 - 398
Target Start/End: Complemental strand, 41187910 - 41187828
Alignment:
Q  316 ctcatgcagagaggcatgcgcacaggttaagcattgttcttcctaagaatcgaacccggtatttctcgaatatgtacttggaa 398  Q
    |||||||  |||||||||||||| ||| |||| ||||| ||||||||||| |||  ||||||| |||| ||| || |||||||    
T  41187910 ctcatgcgtagaggcatgcgcactggtcaagcgttgtttttcctaagaattgaattcggtattcctcggatacgtccttggaa 41187828  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 398
Target Start/End: Original strand, 42770705 - 42770778
Alignment:
Q  325 agaggcatgcgcacaggttaagcattgttcttcctaagaatcgaacccggtatttctcgaatatgtacttggaa 398  Q
    |||||||||||||| ||  |||| ||||||  ||| ||||| ||||||||||||||||| ||| || |||||||    
T  42770705 agaggcatgcgcactggccaagcgttgttccccctgagaattgaacccggtatttctcggatacgtccttggaa 42770778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 270 - 378
Target Start/End: Complemental strand, 7747381 - 7747273
Alignment:
Q  270 ctttcgcaccggtttccgactcgttaatggtagacaactaatttgactcatgcagagaggcatgcgcacaggttaagcattgttcttcctaagaatcgaa 369  Q
    |||||||||||||||||||| |  ||| |||  || ||||||  | |||||||  |||||||||| ||| ||  || | |||||| ||||| ||||||||    
T  7747381 ctttcgcaccggtttccgacccactaaaggtgaacgactaatccggctcatgcgtagaggcatgcacactggccaaacgttgttcctcctaggaatcgaa 7747282  T
Q  370 cccggtatt 378  Q
    |||||||||    
T  7747281 cccggtatt 7747273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 270 - 338
Target Start/End: Complemental strand, 12864331 - 12864263
Alignment:
Q  270 ctttcgcaccggtttccgactcgttaatggtagacaactaatttgactcatgcagagaggcatgcgcac 338  Q
    |||||||||||||||||||| |   |||||| ||| |||||| || |||||||  ||||||||||||||    
T  12864331 ctttcgcaccggtttccgacccaccaatggtggacgactaatctggctcatgcgcagaggcatgcgcac 12864263  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 270 - 424
Target Start/End: Complemental strand, 42086435 - 42086282
Alignment:
Q  270 ctttcgcaccggtttccgactcgttaatggtagacaactaatttgactcatgcagagaggcatgcgcacaggttaagcattgttcttcctaagaatcgaa 369  Q
    |||||||||||||||||||| |   || ||| ||| ||||||  | |||||||  |||||||||||||| ||| |||| ||||||  |||  ||||||||    
T  42086435 ctttcgcaccggtttccgacccaccaaaggtggacgactaatccggctcatgcgtagaggcatgcgcactggtcaagcgttgttccccctgggaatcgaa 42086336  T
Q  370 cccggtatttctcgaatatgtacttggaaaagagcgtcttgcgaccggagcccaa 424  Q
    ||||||||| ||||  || || ||||| || ||||  ||||| ||||||||||||    
T  42086335 cccggtattcctcgggtacgtccttgg-aaggagctccttgccaccggagcccaa 42086282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 270 - 378
Target Start/End: Original strand, 5731919 - 5732027
Alignment:
Q  270 ctttcgcaccggtttccgactcgttaatggtagacaactaatttgactcatgcagagaggcatgcgcacaggttaagcattgttcttcctaagaatcgaa 369  Q
    |||||||||||||||||||| |  ||| |||  || |||||| || ||||| |  |||||||||||||| ||  |||| |||||| ||||  ||||||||    
T  5731919 ctttcgcaccggtttccgacccactaaaggtgaacgactaatctggctcatacgtagaggcatgcgcactggccaagcgttgttcctcctgggaatcgaa 5732018  T
Q  370 cccggtatt 378  Q
    |||||||||    
T  5732019 cccggtatt 5732027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 378
Target Start/End: Complemental strand, 12766184 - 12766131
Alignment:
Q  325 agaggcatgcgcacaggttaagcattgttcttcctaagaatcgaacccggtatt 378  Q
    |||||||||| ||| ||  ||||||||||| |||| ||||||||||||||||||    
T  12766184 agaggcatgcacactggccaagcattgttcctcctcagaatcgaacccggtatt 12766131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 270 - 378
Target Start/End: Complemental strand, 8513627 - 8513519
Alignment:
Q  270 ctttcgcaccggtttccgactcgttaatggtagacaactaatttgactcatgcagagaggcatgcgcacaggttaagcattgttcttcctaagaatcgaa 369  Q
    |||||||||||||||||||| |   || ||| ||| |||||| || ||| |||  ||||||||| |||| ||  ||||||||||   |||| ||||||||    
T  8513627 ctttcgcaccggtttccgacccaccaaaggtggacgactaatctggctcgtgcgtagaggcatgtgcactggccaagcattgtttcccctaggaatcgaa 8513528  T
Q  370 cccggtatt 378  Q
    |||||||||    
T  8513527 cccggtatt 8513519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 270 - 378
Target Start/End: Complemental strand, 21898759 - 21898651
Alignment:
Q  270 ctttcgcaccggtttccgactcgttaatggtagacaactaatttgactcatgcagagaggcatgcgcacaggttaagcattgttcttcctaagaatcgaa 369  Q
    |||||||||||||||||||| |  ||| |||  || ||||||  | |||||||  |||||||||||||| ||  |||| |||||| ||||  ||||||||    
T  21898759 ctttcgcaccggtttccgacccactaaaggtgaacgactaatccggctcatgcgtagaggcatgcgcactggccaagcgttgttcctcctgggaatcgaa 21898660  T
Q  370 cccggtatt 378  Q
    |||||||||    
T  21898659 cccggtatt 21898651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 97
Target Start/End: Complemental strand, 8474958 - 8474926
Alignment:
Q  65 acactatttataactattgatttgactcgagaa 97  Q
    ||||||||||||||||||||||||||| |||||    
T  8474958 acactatttataactattgatttgacttgagaa 8474926  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 270 - 398
Target Start/End: Original strand, 13036003 - 13036131
Alignment:
Q  270 ctttcgcaccggtttccgactcgttaatggtagacaactaatttgactcatgcagagaggcatgcgcacaggttaagcattgttcttcctaagaatcgaa 369  Q
    |||||||||||||||||||| |   ||| || ||| |||||| || |||||||  |||||||||||||| ||  |||  ||||||  ||| | |||||||    
T  13036003 ctttcgcaccggtttccgacccaccaatagtggacgactaatctggctcatgcgtagaggcatgcgcactggccaagtgttgttccccctgaaaatcgaa 13036102  T
Q  370 cccggtatttctcgaatatgtacttggaa 398  Q
    |||| |||| | |||||| || |||||||    
T  13036103 cccgatattccccgaatacgtccttggaa 13036131  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 270 - 338
Target Start/End: Complemental strand, 31129288 - 31129220
Alignment:
Q  270 ctttcgcaccggtttccgactcgttaatggtagacaactaatttgactcatgcagagaggcatgcgcac 338  Q
    ||||||||||||||||||||||   || |||  ||||||||| || |||||||  ||||||||||||||    
T  31129288 ctttcgcaccggtttccgactcaccaaaggtgcacaactaatctggctcatgcgtagaggcatgcgcac 31129220  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 348 - 388
Target Start/End: Original strand, 32150189 - 32150229
Alignment:
Q  348 attgttcttcctaagaatcgaacccggtatttctcgaatat 388  Q
    |||||||||||||||||||||| ||| |||||||| |||||    
T  32150189 attgttcttcctaagaatcgaatccgatatttctcaaatat 32150229  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 270 - 398
Target Start/End: Complemental strand, 5855630 - 5855502
Alignment:
Q  270 ctttcgcaccggtttccgactcgttaatggtagacaactaatttgactcatgcagagaggcatgcgcacaggttaagcattgttcttcctaagaatcgaa 369  Q
    |||||||| ||||||||||| |  ||| |||  || ||||||  | |||||||  |||||||||||||| ||  |||| |||||| ||||  ||||||||    
T  5855630 ctttcgcatcggtttccgacccactaaaggtgaacgactaatccgcctcatgcgtagaggcatgcgcactggccaagcgttgttcctcctgggaatcgaa 5855531  T
Q  370 cccggtatttctcgaatatgtacttggaa 398  Q
    ||||||||| | |||||| || |||||||    
T  5855530 cccggtattccccgaatacgtccttggaa 5855502  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 270 - 387
Target Start/End: Complemental strand, 10422896 - 10422779
Alignment:
Q  270 ctttcgcaccggtttccgactcgttaatggtagacaactaatttgactcatgcagagaggcatgcgcacaggttaagcattgttcttcctaagaatcgaa 369  Q
    |||||||||||||||||||||    || ||| ||| ||||||  | |||||||  |||||||||||||| ||  |||  |||||| |||||  |||||||    
T  10422896 ctttcgcaccggtttccgacttaccaaaggtggacgactaatccggctcatgcgtagaggcatgcgcactggccaagtgttgttcctcctagaaatcgaa 10422797  T
Q  370 cccggtatttctcgaata 387  Q
    ||||||||| | ||||||    
T  10422796 cccggtattccccgaata 10422779  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 316 - 383
Target Start/End: Complemental strand, 365204 - 365137
Alignment:
Q  316 ctcatgcagagaggcatgcgcacaggttaagcattgttcttcctaagaatcgaacccggtatttctcg 383  Q
    |||||||  |||||||||||||| | |||||| |||||| ||||  ||||||||||||||||| ||||    
T  365204 ctcatgcgtagaggcatgcgcactgattaagcgttgttcctcctgtgaatcgaacccggtattcctcg 365137  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 378
Target Start/End: Complemental strand, 29151995 - 29151942
Alignment:
Q  325 agaggcatgcgcacaggttaagcattgttcttcctaagaatcgaacccggtatt 378  Q
    |||||||||||||| ||| || | |||||||||||  |||||||||||||||||    
T  29151995 agaggcatgcgcactggtcaaacgttgttcttcctgggaatcgaacccggtatt 29151942  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 269 - 338
Target Start/End: Original strand, 29805438 - 29805507
Alignment:
Q  269 tctttcgcaccggtttccgactcgttaatggtagacaactaatttgactcatgcagagaggcatgcgcac 338  Q
    |||||||||| ||||||||||||  ||| ||||||| | ||||||| |||||||  |||| |||||||||    
T  29805438 tctttcgcactggtttccgactcactaaaggtagacgattaatttggctcatgcgtagagacatgcgcac 29805507  T

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