View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15576_high_3 (Length: 481)
Name: NF15576_high_3
Description: NF15576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15576_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 206; Significance: 1e-112; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 147 - 444
Target Start/End: Original strand, 8439334 - 8439626
Alignment:
| Q |
147 |
tattatacttttgttaaaccaatccaatggttggaataacaactgtgttgttttttaca--actggatccaaatatgtgctctcaaccgttatatctagg |
244 |
Q |
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| T |
8439334 |
tattatacttttgttaaaccaatccaatgattggaataacaactgtgttgttttttacagcactggatccaaatatgtgctcacaaccgttatatctagg |
8439433 |
T |
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| Q |
245 |
tcaatggttgcgatcatttcattgcatgatctcaaatcaaccaataaaattaattaccacgtacgtagtaataaacaaatttatctcatttcatttatga |
344 |
Q |
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| T |
8439434 |
ttaatggttgagatcatttcattgcatgatctcaaatcaaccaataaaattaattacc----atgtagtaataaataaatttatctcatttcatttatga |
8439529 |
T |
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| Q |
345 |
aagtagttctttnnnnnnnnnttaattcatcaaagtagtcacaatataagctagaacataatcaaaagtgttgtgattagcataaaataatgtcactcta |
444 |
Q |
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| T |
8439530 |
aagtagttcttttaaaaaaa---aaatcatcaaagtagtcacaatataagctagaacataatcaaaagtgttgtgattagcataaaataatgtcactcta |
8439626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 22 - 88
Target Start/End: Original strand, 8438937 - 8439003
Alignment:
| Q |
22 |
gtgagatgataagacattaccaaaatcttatactgcatttcacaactttaatttaccatgtacgtgt |
88 |
Q |
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| T |
8438937 |
gtgagatgataagacattaccaaaatcttatgctgcatttcacaactttaatttaccatgtacgtgt |
8439003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 115 - 191
Target Start/End: Complemental strand, 62365 - 62289
Alignment:
| Q |
115 |
aataataaccattaaatcttatttgatagtactattatacttttgttaaaccaatccaatggttggaataacaactg |
191 |
Q |
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| T |
62365 |
aataatagccattaaattttatcggatgctactattacacttttgtcaaactcatccaatggttgggataacaactg |
62289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 108 - 160
Target Start/End: Original strand, 18055510 - 18055562
Alignment:
| Q |
108 |
agttttcaataataaccattaaatcttatttgatagtactattatacttttgt |
160 |
Q |
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| T |
18055510 |
agttttcaataataaccattgaatcttattggatggtactgttatatttttgt |
18055562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 92 - 166
Target Start/End: Original strand, 45482952 - 45483025
Alignment:
| Q |
92 |
caacacaatttcacatagttttcaataataaccattaaatcttatttgatagtactattatacttttgttaaacc |
166 |
Q |
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| T |
45482952 |
caacacagtttcacacagttttcaataatagccattggatc-tattggttggtactattatacttttgtcaaacc |
45483025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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