View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15576_high_7 (Length: 262)
Name: NF15576_high_7
Description: NF15576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15576_high_7 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 14 - 262
Target Start/End: Original strand, 16842533 - 16842781
Alignment:
| Q |
14 |
attattcttcgataattggtactcttgtgagtgtttgagagggctgggaaagtttatgagttgccgtgttttcttaaaggtttgttttatctgtatattt |
113 |
Q |
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| T |
16842533 |
attattcttcgataattggtactcttgtgagtgtttgagagggctgggaaagtttatgagttgccgtgttttcttaaaggtttgttttatctgtatattt |
16842632 |
T |
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| Q |
114 |
tggttaatcggagttgttgttccactgtggttatggcttatgtgaagaataagttggtagatgatttgttcttgtaaagaggcaggtttgctcgaggatg |
213 |
Q |
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| T |
16842633 |
tggttaatcggagttgttgttccactgtggttatggcttatgtgaagaataagttggtagatgatttgttcttgtaaagaggcaggtttgctcgaggatg |
16842732 |
T |
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| Q |
214 |
ctgttggaatatataaccagatgatgaaaagtgatgctgacgagaagaa |
262 |
Q |
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| T |
16842733 |
ctgttggaatatataaccagatgatgaaaagtgatgctgacgagaagaa |
16842781 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 14 - 178
Target Start/End: Original strand, 24209372 - 24209538
Alignment:
| Q |
14 |
attattcttcgataattggtactcttgtgagtgttt--gagagggctgggaaagtttatgagttgccgtgttttcttaaaggtttgttttatctgtatat |
111 |
Q |
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| T |
24209372 |
attattcttcgataattggtactcttgtgagtgtttatgagagggctgggaaagtttatgagttgccgcgtttgcttaaaggttcgttttatcggtatat |
24209471 |
T |
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| Q |
112 |
tttggttaatcggagttgttgttccactgtggttatggcttatgtgaagaataagttggtagatgat |
178 |
Q |
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| T |
24209472 |
tttggttaatcagagctgttgttccactgtggttatggcttatgtgaagaataagttggtggatgat |
24209538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 175 - 262
Target Start/End: Original strand, 24209606 - 24209693
Alignment:
| Q |
175 |
tgatttgttcttgtaaagaggcaggtttgctcgaggatgctgttggaatatataaccagatgatgaaaagtgatgctgacgagaagaa |
262 |
Q |
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| T |
24209606 |
tgatttgttcttgtaaagaggcaggtttgcttgaggatgctgttggaatatataaccagatgatgaaaagtaatgctgacgagaagaa |
24209693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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