View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15576_low_1 (Length: 508)
Name: NF15576_low_1
Description: NF15576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15576_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 372; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 127 - 498
Target Start/End: Complemental strand, 49979042 - 49978671
Alignment:
| Q |
127 |
ggatatacatacatacattacagatagctagcgtgtctttatgataacaaaatatcactccattacataccatcttgaaatcgattgatcgttgaaggat |
226 |
Q |
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| T |
49979042 |
ggatatacatacatacattacagatagctagcgtgtctttatgataacaaaatatcactccattacataccatcttgaaatcgattgatcgttgaaggat |
49978943 |
T |
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| Q |
227 |
gatgatctggaaaaccttgtccaaccggtgcacctatgcacgtgtaacttgactcacctccacctgccacatattgctgcccattgttactcatcatatg |
326 |
Q |
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| T |
49978942 |
gatgatctggaaaaccttgtccaaccggtgcacctatgcacgtgtaacttgactcacctccacctgccacatattgctgcccattgttactcatcatatg |
49978843 |
T |
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| Q |
327 |
actcacatgacggtaatcgtgaggaaccaaatgtggagggaaagacataggccttgatggtgaagagtacagatattgttgaacttgagatgttgaggat |
426 |
Q |
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| T |
49978842 |
actcacatgacggtaatcgtgaggaaccaaatgtggagggaaagacataggccttgatggtgaagagtacagatattgttgaacttgagatgttgaggat |
49978743 |
T |
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| Q |
427 |
gatgaacctgcagcagagaaggatgttgggaaactcaatggcattgttgggtgatgatgatgatctcctatg |
498 |
Q |
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| T |
49978742 |
gatgaacctgcagcagagaaggatgttgggaaactcaatggcattgttgggtgatgatgatgatctcctatg |
49978671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 18 - 113
Target Start/End: Complemental strand, 49979163 - 49979068
Alignment:
| Q |
18 |
cacctagttactgttgttgctatctcttctttcttactcatgatgagtcataaccctagctatctgtcagcaccttaattaattatgaatcatcta |
113 |
Q |
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| T |
49979163 |
cacctagttactgttgttgctatctcttctttcttactcatgatgagtcataaccctagctatctgtcagcaccttaattaattatgaatcatcta |
49979068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 237 - 293
Target Start/End: Original strand, 49952122 - 49952178
Alignment:
| Q |
237 |
aaaaccttgtccaaccggtgcacctatgcacgtgtaacttgactcacctccacctgc |
293 |
Q |
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| T |
49952122 |
aaaaccttgtctaaccggtgcacctatgcaagtgtaacttgactcaccaccacctgc |
49952178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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