View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15576_low_10 (Length: 225)
Name: NF15576_low_10
Description: NF15576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15576_low_10 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 9839484 - 9839708
Alignment:
| Q |
1 |
tcgtatacaacaggcacaatctcggttgtacactgcaatttaaaaccttagtttaaactaaagatagaaaccttttgctactcattaacaaactaaagga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
9839484 |
tcgtatacaacaggcacaatctcggttgtacactgcaatttaaaaccttagtttaaactaaagatagaaaccttttgctactcattaacaaacttaagga |
9839583 |
T |
|
| Q |
101 |
taaagataacttttgccacaagaatagtaggtggcatgtgaaggaaccataatcactgaattaataaaacaaacatgaaggtatatacatgagtttagtt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |
|
|
| T |
9839584 |
taaagataacttttgccacaagaatagtaggtggcatgtgaaggaaccataatcactgaattaataagacaaacatgaaggtatatacatgagtttaatt |
9839683 |
T |
|
| Q |
201 |
gatcatatacctgctaactctaact |
225 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
9839684 |
gatcatatacctgctaactctaact |
9839708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University