View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15576_low_11 (Length: 220)

Name: NF15576_low_11
Description: NF15576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15576_low_11
NF15576_low_11
[»] chr4 (6 HSPs)
chr4 (80-204)||(27074351-27074475)
chr4 (80-204)||(27154442-27154566)
chr4 (9-87)||(27074509-27074586)
chr4 (9-87)||(27154600-27154677)
chr4 (9-77)||(6800169-6800237)
chr4 (9-72)||(6804611-6804674)
[»] chr5 (3 HSPs)
chr5 (80-184)||(34154038-34154142)
chr5 (9-77)||(41361468-41361536)
chr5 (9-70)||(41038055-41038116)
[»] chr3 (1 HSPs)
chr3 (9-69)||(53833662-53833722)
[»] chr2 (1 HSPs)
chr2 (80-190)||(13310564-13310674)
[»] chr1 (1 HSPs)
chr1 (80-124)||(2114951-2114995)


Alignment Details
Target: chr4 (Bit Score: 101; Significance: 3e-50; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 80 - 204
Target Start/End: Complemental strand, 27074475 - 27074351
Alignment:
Q  80 ctcaaagctagtgatctccaagatacaacaaccacttctcactaatattgtacgtgaaatattaagggcacaggaacagttattggatgctcaagggaac 179  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| || |||||||||| |||||||||||||||||||||||||||    
T  27074475 ctcaaagctagtaatctccaagatacaacaaccacttctcactaatattgtacctgaactagtaagggcacaagaacagttattggatgctcaagggaac 27074376  T
Q  180 ttaatatatattttatttattgtta 204  Q
    ||||||||||||||||| |||||||    
T  27074375 ttaatatatattttattaattgtta 27074351  T

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Target: chr4; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 80 - 204
Target Start/End: Complemental strand, 27154566 - 27154442
Alignment:
Q  80 ctcaaagctagtgatctccaagatacaacaaccacttctcactaatattgtacgtgaaatattaagggcacaggaacagttattggatgctcaagggaac 179  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| || |||||||||| |||||||||||||||||||||||||||    
T  27154566 ctcaaagctagtaatctccaagatacaacaaccacttctcactaatattgtacctgaactagtaagggcacaagaacagttattggatgctcaagggaac 27154467  T
Q  180 ttaatatatattttatttattgtta 204  Q
    ||||||||||||||||| |||||||    
T  27154466 ttaatatatattttattaattgtta 27154442  T

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Target: chr4; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 9 - 87
Target Start/End: Complemental strand, 27074586 - 27074509
Alignment:
Q  9 ataattctcattaaaataaagaagaacgggagaacttatcggttattggctgaggcgtgcaaacacacttgctcaaagc 87  Q
    |||||||| ||||||||||||||||| ||||||| |||||| ||||||||||||| ||||||||||||||||| |||||    
T  27074586 ataattcttattaaaataaagaagaaggggagaatttatcg-ttattggctgaggtgtgcaaacacacttgcttaaagc 27074509  T

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Target: chr4; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 9 - 87
Target Start/End: Complemental strand, 27154677 - 27154600
Alignment:
Q  9 ataattctcattaaaataaagaagaacgggagaacttatcggttattggctgaggcgtgcaaacacacttgctcaaagc 87  Q
    |||||||| ||||||||||||||||| ||||||| |||||| ||||||||||||| ||||||||||||||||| |||||    
T  27154677 ataattcttattaaaataaagaagaaggggagaatttatcg-ttattggctgaggtgtgcaaacacacttgcttaaagc 27154600  T

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Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 77
Target Start/End: Original strand, 6800169 - 6800237
Alignment:
Q  9 ataattctcattaaaataaagaagaacgggagaacttatcggttattggctgaggcgtgcaaacacact 77  Q
    |||||| ||| ||||||||||||||| || |||||||||||||  ||||||||||||||||||| ||||    
T  6800169 ataattatcactaaaataaagaagaaaggaagaacttatcggtccttggctgaggcgtgcaaacgcact 6800237  T

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Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 9 - 72
Target Start/End: Original strand, 6804611 - 6804674
Alignment:
Q  9 ataattctcattaaaataaagaagaacgggagaacttatcggttattggctgaggcgtgcaaac 72  Q
    |||||| ||| ||||||||||||||| || |||||||||||||  |||||||||||||||||||    
T  6804611 ataattatcactaaaataaagaagaaaggaagaacttatcggtccttggctgaggcgtgcaaac 6804674  T

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Target: chr5 (Bit Score: 45; Significance: 8e-17; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 80 - 184
Target Start/End: Original strand, 34154038 - 34154142
Alignment:
Q  80 ctcaaagctagtgatctccaagatacaacaaccacttctcactaatattgtacgtgaaatattaagggcacaggaacagttattggatgctcaagggaac 179  Q
    ||||||||||||| |||||| ||||||||| |||||| ||||||| | || |||||||  |  ||||||||||||||   ||||||||||||| ||||||    
T  34154038 ctcaaagctagtgctctccaggatacaacagccacttttcactaacactgcacgtgaaccagcaagggcacaggaaccactattggatgctcatgggaac 34154137  T
Q  180 ttaat 184  Q
    |||||    
T  34154138 ttaat 34154142  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 77
Target Start/End: Complemental strand, 41361536 - 41361468
Alignment:
Q  9 ataattctcattaaaataaagaagaacgggagaacttatcggttattggctgaggcgtgcaaacacact 77  Q
    |||||| ||| ||||||||||||||| || |||||||||||||  ||||||||||||||||||| ||||    
T  41361536 ataattatcagtaaaataaagaagaaaggaagaacttatcggtccttggctgaggcgtgcaaacgcact 41361468  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 9 - 70
Target Start/End: Original strand, 41038055 - 41038116
Alignment:
Q  9 ataattctcattaaaataaagaagaacgggagaacttatcggttattggctgaggcgtgcaa 70  Q
    |||||||||| ||||||||||||||| |  |||  ||||||||  |||||||||||||||||    
T  41038055 ataattctcagtaaaataaagaagaaggaaagagtttatcggtcgttggctgaggcgtgcaa 41038116  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 53833722 - 53833662
Alignment:
Q  9 ataattctcattaaaataaagaagaacgggagaacttatcggttattggctgaggcgtgca 69  Q
    |||||||||| ||||||||||||||| || ||||||||||| |  ||||||||||||||||    
T  53833722 ataattctcagtaaaataaagaagaaaggaagaacttatcgatcgttggctgaggcgtgca 53833662  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 80 - 190
Target Start/End: Original strand, 13310564 - 13310674
Alignment:
Q  80 ctcaaagctagtgatctccaagatacaacaaccacttctcactaatattgtacgtgaaatattaagggcacaggaacagttattggatgctcaagggaac 179  Q
    ||||||||||| | |||| | |||| |||| |||| ||||||||| | |  ||||||| || |||||||||| ||||   ||||||||| | ||||||||    
T  13310564 ctcaaagctagcgctctctaggataaaacagccacctctcactaacactacacgtgaattagtaagggcacatgaaccactattggatgtttaagggaac 13310663  T
Q  180 ttaatatatat 190  Q
    |||||||||||    
T  13310664 ttaatatatat 13310674  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 124
Target Start/End: Original strand, 2114951 - 2114995
Alignment:
Q  80 ctcaaagctagtgatctccaagatacaacaaccacttctcactaa 124  Q
    ||||||||||||  |||| |||||||| |||||||||||||||||    
T  2114951 ctcaaagctagtattctcaaagatacatcaaccacttctcactaa 2114995  T

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